Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002902.1

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

259055 .. 259837

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002902.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgatggaaaatgtcacattagagtgtgaaatgataaaaagagagagacaaagggaaggagcaaaatttccaattccagtcggattctcaagccagccttctcagaacatcaaggctcgattgcttgaagaggttcccaagttgcagagattgcctgtaaagaaggtggagaggaggagaacagtcactcctcgacctaattctttggatttgaaggccgggaatggagctgccggcggcagtgaaatgtcggcggctcagaagctgttggtcacttcgacgaggagtttatcagtttcgtttcagggaaagtcgtacgcgctccaggatcagagcgagaattccagattgatggagcagtaccgttggccgtcgagattgaggccggacacttgtatgaccaggagcttggattgtacggcggagatgaagaaattgaatggatccggctccaatgtggttagggcattacaaaattcactggggaatgatcttgatgggagattgagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

170

Amino Acids

18.97

Weight (kDa)

9.95

Isoelectric Point (pI)

61.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	320
AciI	CCGC	3 cut(s)	237, 254, 422
AclWI	GGATC	3 cut(s)	336, 438, 451
AcoI	YGGCCR	1 cut(s)	368
AcsI	RAATTY	3 cut(s)	65, 340, 475
AfaI	GTAC	3 cut(s)	317, 362, 418
AgsI	TTSAA	3 cut(s)	128, 214, 439
AjnI	CCWGG	2 cut(s)	324, 401
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
AluBI	AGCT	4 cut(s)	230, 265, 408, 510
AluI	AGCT	4 cut(s)	230, 265, 408, 510
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	3 cut(s)	336, 438, 451
AlwNI	CAGNNNCTG	1 cut(s)	265
AoxI	GGCC	3 cut(s)	216, 368, 383
ApeKI	GCWGC	1 cut(s)	230
ApoI	RAATTY	3 cut(s)	65, 340, 475
Asp700I	GAANNNNTTC	1 cut(s)	132
AspLEI	GCGC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	443
BbvI	GCAGC	1 cut(s)	217
BccI	CCATC	2 cut(s)	346, 491
BceAI	ACGGC	2 cut(s)	355, 435
BciT130I	CCWGG	2 cut(s)	326, 403
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	231, 238, 255
BlsI	GCNGC	3 cut(s)	232, 239, 256
Bme1390I	CCNGG	3 cut(s)	220, 326, 403
BmiI	GGNNCC	3 cut(s)	135, 445, 451
BmrFI	CCNGG	3 cut(s)	220, 326, 403
BmrI	ACTGGG	1 cut(s)	491
BmuI	ACTGGG	1 cut(s)	491
BpmI	CTGGAG	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	73
BpuMI	CCSGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	172, 202
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	2 cut(s)	77, 486
BseBI	CCWGG	2 cut(s)	326, 403
BseMII	CTCAG	2 cut(s)	116, 272
BseNI	ACTGG	2 cut(s)	77, 486
BseRI	GAGGAG	4 cut(s)	180, 187, 190, 298
BseXI	GCAGC	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	320
BshFI	GGCC	3 cut(s)	218, 370, 385
BsiSI	CCGG	4 cut(s)	219, 234, 386, 447
BsiWI	CGTACG	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	218, 370, 385
Bsp143I	GATC	3 cut(s)	328, 443, 490
BspACI	CCGC	3 cut(s)	237, 254, 422
BspANI	GGCC	3 cut(s)	218, 370, 385
BspCNI	CTCAG	2 cut(s)	115, 271
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	135, 445, 451
BspPI	GGATC	3 cut(s)	336, 438, 451
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	2 cut(s)	77, 486
BssAI	RCCGGY	1 cut(s)	233
BssMI	GATC	3 cut(s)	328, 443, 490
Bst2UI	CCWGG	2 cut(s)	326, 403
Bst4CI	ACNGT	2 cut(s)	184, 365
Bst6I	CTCTTC	1 cut(s)	123
BstAPI	GCANNNNNTGC	1 cut(s)	151
BstC8I	GCNNGC	2 cut(s)	95, 235
BstDEI	CTNAG	2 cut(s)	102, 258
BstFNI	CGCG	1 cut(s)	320
BstHHI	GCGC	1 cut(s)	322
BstKTI	GATC	3 cut(s)	331, 446, 493
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	3 cut(s)	328, 443, 490
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNI	CCWGG	2 cut(s)	326, 403
BstSCI	CCNGG	3 cut(s)	218, 324, 401
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	217
BstX2I	RGATCY	1 cut(s)	443
BstXI	CCANNNNNNTGG	2 cut(s)	352, 409
BstYI	RGATCY	1 cut(s)	443
BsuRI	GGCC	3 cut(s)	218, 370, 385
BtsI	GCAGTG	1 cut(s)	247
BtsIMutI	CAGTG	2 cut(s)	247, 479
Cac8I	GCNNGC	2 cut(s)	95, 235
CaiI	CAGNNNCTG	1 cut(s)	265
CfoI	GCGC	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	233
Csp6I	GTAC	3 cut(s)	316, 361, 417
CviQI	GTAC	3 cut(s)	316, 361, 417
DdeI	CTNAG	2 cut(s)	102, 258
DpnI	GATC	3 cut(s)	330, 445, 492
DpnII	GATC	3 cut(s)	328, 443, 490
EaeI	YGGCCR	1 cut(s)	368
Eam1104I	CTCTTC	1 cut(s)	123
EarI	CTCTTC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	437
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	324, 401
FaiI	YATR	1 cut(s)	398
FalI	AAGNNNNNCTT	2 cut(s)	82, 114
Fnu4HI	GCNGC	3 cut(s)	231, 238, 255
Fsp4HI	GCNGC	3 cut(s)	231, 238, 255
GlaI	GCGC	1 cut(s)	321
GluI	GCNGC	3 cut(s)	231, 238, 255
GsuI	CTGGAG	1 cut(s)	308
HaeIII	GGCC	3 cut(s)	218, 370, 385
HapII	CCGG	4 cut(s)	219, 234, 386, 447
HhaI	GCGC	1 cut(s)	322
Hin6I	GCGC	1 cut(s)	320
HinP1I	GCGC	1 cut(s)	320
HinfI	GANTC	1 cut(s)	84
HpaII	CCGG	4 cut(s)	219, 234, 386, 447
Hpy188I	TCNGA	4 cut(s)	83, 105, 261, 333
Hpy188III	TCNNGA	3 cut(s)	345, 375, 494
Hpy99I	CGWCG	2 cut(s)	283, 376
HpyAV	CCTTC	4 cut(s)	50, 108, 157, 208
HpyCH4III	ACNGT	2 cut(s)	184, 365
HpyCH4V	TGCA	1 cut(s)	145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	102, 258
HspAI	GCGC	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	328, 443, 490
LmnI	GCTCC	6 cut(s)	59, 227, 327, 355, 405, 455
Lsp1109I	GCAGC	1 cut(s)	217
MaeIII	GTNAC	3 cut(s)	13, 184, 271
MalI	GATC	3 cut(s)	330, 445, 492
MboI	GATC	3 cut(s)	328, 443, 490
MboII	GAAGA	2 cut(s)	140, 442
MflI	RGATCY	1 cut(s)	443
MluCI	AATT	6 cut(s)	65, 72, 199, 340, 434, 475
MmeI	TCCRAC	1 cut(s)	61
MnlI	CCTC	6 cut(s)	124, 165, 168, 201, 276, 375
MroNI	GCCGGC	1 cut(s)	233
MroXI	GAANNNNTTC	1 cut(s)	132
MslI	CAYNNNNRTG	2 cut(s)	22, 395
MspI	CCGG	4 cut(s)	219, 234, 386, 447
MspR9I	CCNGG	3 cut(s)	220, 326, 403
MvaI	CCWGG	2 cut(s)	326, 403
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	1 cut(s)	151
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	3 cut(s)	328, 443, 490
NgoMIV	GCCGGC	1 cut(s)	233
NlaIV	GGNNCC	3 cut(s)	135, 445, 451
NmuCI	GTSAC	3 cut(s)	13, 184, 271
PdiI	GCCGGC	1 cut(s)	235
PdmI	GAANNNNTTC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	84
Pfl23II	CGTACG	1 cut(s)	315
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	3 cut(s)	232, 239, 256
Psp6I	CCWGG	2 cut(s)	324, 401
PspGI	CCWGG	2 cut(s)	324, 401
PspLI	CGTACG	1 cut(s)	315
PspN4I	GGNNCC	3 cut(s)	135, 445, 451
PstNI	CAGNNNCTG	1 cut(s)	265
PsuI	RGATCY	1 cut(s)	443
RsaI	GTAC	3 cut(s)	317, 362, 418
RsaNI	GTAC	3 cut(s)	316, 361, 417
RseI	CAYNNNNRTG	2 cut(s)	22, 395
SatI	GCNGC	3 cut(s)	231, 238, 255
Sau3AI	GATC	3 cut(s)	328, 443, 490
ScrFI	CCNGG	3 cut(s)	220, 326, 403
SetI	ASST	7 cut(s)	135, 168, 199, 232, 267, 410, 512
SmiMI	CAYNNNNRTG	2 cut(s)	22, 395
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	6 cut(s)	65, 72, 199, 340, 434, 475
SsiI	CCGC	3 cut(s)	237, 254, 422
StyD4I	CCNGG	3 cut(s)	218, 324, 401
TaaI	ACNGT	2 cut(s)	184, 365
TaqI	TCGA	4 cut(s)	118, 193, 278, 374
TasI	AATT	6 cut(s)	65, 72, 199, 340, 434, 475
TauI	GCSGC	2 cut(s)	240, 257
TfiI	GAWTC	1 cut(s)	84
TscAI	CASTG	2 cut(s)	247, 486
TseFI	GTSAC	3 cut(s)	13, 184, 271
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	3 cut(s)	13, 184, 271
TspDTI	ATGAA	1 cut(s)	443
TspRI	CASTG	2 cut(s)	247, 486
XapI	RAATTY	3 cut(s)	65, 340, 475
XmnI	GAANNNNTTC	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.