Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

27673914 .. 27674492

Gene Structure 579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG139600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGCTAAAGCTCAAATTTTCTCTCTCTTGTTCTCGGCTATTTCGGAGAGAGACAAAGGGAAGGAGCCAAAAATTTCCAATTCCAGTCGGATTCTCAAGCCAGCCTTCTCAGAACATCAAGGCTCGATTGCTTGAAGAGGTTCCCAATTTGCAGAGATTGGCTTTAAAGAAGGTGGAGAGGAGGAGAACGGTCACTCCTCAACCTAATTCTTTGGATTTTAGGGCCGGGAATGGAGCTGCCGGCGGCGGTGAAATGTCGGCGGCTCAGAAGTTGTTGGTCACTTCGATGAGGAGTTTATCGGTTTCGTTTCAGGGCGAGTCGTACGCGCTCCAGGTGAGTAAAGCCAAGCGACTGCCGTCTCTGACTGCGAGGAAAGGCACGCCGACGAGGCTGGATCAGAGCGAGAATTCCAAACTGATGGAGCAGTACCGATGGCCGCCGAGGTTGAGGCCGGACACTTGTATGACCAGGAGCTTGGATTGTACGGTGGAGATGAAGAAATTGAATGGATCTGGCTCCAATGTGGTTAGGGCATTGCAAAATTCACTGGGGAATGATCTTGATGGGAGATTGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

192

Amino Acids

21.37

Weight (kDa)

10.81

Isoelectric Point (pI)

57.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	326
AciI	CCGC	4 cut(s)	243, 246, 260, 437
AclWI	GGATC	2 cut(s)	402, 517
AcoI	YGGCCR	1 cut(s)	434
AcsI	RAATTY	4 cut(s)	14, 71, 406, 541
AfaI	GTAC	3 cut(s)	323, 428, 484
AgsI	TTSAA	2 cut(s)	134, 505
AjnI	CCWGG	2 cut(s)	330, 467
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	4 cut(s)	10, 236, 474, 576
AluI	AGCT	4 cut(s)	10, 236, 474, 576
Alw26I	GTCTC	2 cut(s)	44, 363
AlwI	GGATC	2 cut(s)	402, 517
AoxI	GGCC	3 cut(s)	222, 434, 449
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	4 cut(s)	14, 71, 406, 541
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	222
AsuC2I	CCSGG	1 cut(s)	226
AsuHPI	GGTGA	2 cut(s)	260, 346
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	412, 426, 557
BceAI	ACGGC	1 cut(s)	340
BciT130I	CCWGG	2 cut(s)	332, 469
BcnI	CCSGG	1 cut(s)	226
BcoDI	GTCTC	2 cut(s)	44, 363
BglI	GCCNNNNNGGC	1 cut(s)	388
BisI	GCNGC	4 cut(s)	237, 244, 261, 437
BlsI	GCNGC	4 cut(s)	238, 245, 262, 438
Bme1390I	CCNGG	3 cut(s)	226, 332, 469
BmgT120I	GGNCC	1 cut(s)	222
BmiI	GGNNCC	3 cut(s)	65, 141, 517
BmrFI	CCNGG	3 cut(s)	226, 332, 469
BmrI	ACTGGG	1 cut(s)	557
BmuI	ACTGGG	1 cut(s)	557
BoxI	GACNNNNGTC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	1 cut(s)	226
BsaJI	CCNNGG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	2 cut(s)	83, 552
Bse3DI	GCAATG	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	332, 469
BseDI	CCNNGG	1 cut(s)	440
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	2 cut(s)	122, 278
BseNI	ACTGG	2 cut(s)	83, 552
BseRI	GAGGAG	4 cut(s)	186, 193, 196, 304
BseXI	GCAGC	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	3 cut(s)	224, 436, 451
BsiSI	CCGG	3 cut(s)	225, 240, 452
BsiWI	CGTACG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	44, 363
BsmBI	CGTCTC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	224, 436, 451
Bsp143I	GATC	3 cut(s)	394, 509, 556
BspACI	CCGC	4 cut(s)	243, 246, 260, 437
BspANI	GGCC	3 cut(s)	224, 436, 451
BspCNI	CTCAG	2 cut(s)	121, 277
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	3 cut(s)	65, 141, 517
BspPI	GGATC	2 cut(s)	402, 517
BsrDI	GCAATG	1 cut(s)	533
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	83, 552
BssAI	RCCGGY	1 cut(s)	239
BssECI	CCNNGG	1 cut(s)	440
BssMI	GATC	3 cut(s)	394, 509, 556
Bst2UI	CCWGG	2 cut(s)	332, 469
Bst4CI	ACNGT	2 cut(s)	190, 487
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	3 cut(s)	101, 241, 380
BstDEI	CTNAG	2 cut(s)	108, 264
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	397, 512, 559
BstMAI	GTCTC	2 cut(s)	44, 363
BstMBI	GATC	3 cut(s)	394, 509, 556
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	2 cut(s)	332, 469
BstPAI	GACNNNNGTC	1 cut(s)	355
BstSCI	CCNGG	3 cut(s)	224, 330, 467
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	223
BstX2I	RGATCY	1 cut(s)	509
BstXI	CCANNNNNNTGG	2 cut(s)	418, 475
BstYI	RGATCY	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	224, 436, 451
BtsIMutI	CAGTG	1 cut(s)	545
Cac8I	GCNNGC	3 cut(s)	101, 241, 380
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	222
Csp6I	GTAC	3 cut(s)	322, 427, 483
CviQI	GTAC	3 cut(s)	322, 427, 483
DdeI	CTNAG	2 cut(s)	108, 264
DpnI	GATC	3 cut(s)	396, 511, 558
DpnII	GATC	3 cut(s)	394, 509, 556
DraI	TTTAAA	1 cut(s)	165
EaeI	YGGCCR	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EcoRI	GAATTC	1 cut(s)	406
EcoRII	CCWGG	2 cut(s)	330, 467
Esp3I	CGTCTC	1 cut(s)	363
FaiI	YATR	1 cut(s)	464
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
Fnu4HI	GCNGC	4 cut(s)	237, 244, 261, 437
Fsp4HI	GCNGC	4 cut(s)	237, 244, 261, 437
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	4 cut(s)	237, 244, 261, 437
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	224, 436, 451
HapII	CCGG	3 cut(s)	225, 240, 452
HhaI	GCGC	1 cut(s)	328
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	2 cut(s)	90, 317
HpaII	CCGG	3 cut(s)	225, 240, 452
HphI	GGTGA	2 cut(s)	260, 346
Hpy188I	TCNGA	6 cut(s)	45, 89, 111, 267, 363, 399
Hpy188III	TCNNGA	1 cut(s)	560
Hpy99I	CGWCG	1 cut(s)	388
HpyAV	CCTTC	3 cut(s)	54, 114, 163
HpyCH4III	ACNGT	2 cut(s)	190, 487
HpyCH4V	TGCA	2 cut(s)	151, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	2 cut(s)	108, 264
HspAI	GCGC	1 cut(s)	326
KroI	GCCGGC	1 cut(s)	239
KroNI	GCCGGC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	394, 509, 556
LmnI	GCTCC	6 cut(s)	63, 233, 333, 421, 471, 521
Lsp1109I	GCAGC	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	190, 277
MalI	GATC	3 cut(s)	396, 511, 558
MboI	GATC	3 cut(s)	394, 509, 556
MboII	GAAGA	2 cut(s)	146, 508
MflI	RGATCY	1 cut(s)	509
MluCI	AATT	8 cut(s)	14, 71, 78, 145, 205, 406, 500, 541
MlyI	GAGTC	1 cut(s)	326
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	9 cut(s)	130, 171, 174, 207, 282, 363, 381, 435, 441
MroNI	GCCGGC	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	138
MseI	TTAA	1 cut(s)	164
MslI	CAYNNNNRTG	2 cut(s)	284, 461
MspI	CCGG	3 cut(s)	225, 240, 452
MspR9I	CCNGG	3 cut(s)	226, 332, 469
MvaI	CCWGG	2 cut(s)	332, 469
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	388
NaeI	GCCGGC	1 cut(s)	241
NciI	CCSGG	1 cut(s)	226
NdeII	GATC	3 cut(s)	394, 509, 556
NgoMIV	GCCGGC	1 cut(s)	239
NlaIV	GGNNCC	3 cut(s)	65, 141, 517
NmeAIII	GCCGAG	2 cut(s)	13, 465
NmuCI	GTSAC	2 cut(s)	190, 277
PdiI	GCCGGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	90
Pfl23II	CGTACG	1 cut(s)	321
PkrI	GCNGC	4 cut(s)	238, 245, 262, 438
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PshAI	GACNNNNGTC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	330, 467
PspGI	CCWGG	2 cut(s)	330, 467
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	65, 141, 517
PspPI	GGNCC	1 cut(s)	222
PsuI	RGATCY	1 cut(s)	509
RsaI	GTAC	3 cut(s)	323, 428, 484
RsaNI	GTAC	3 cut(s)	322, 427, 483
RseI	CAYNNNNRTG	2 cut(s)	284, 461
SaqAI	TTAA	1 cut(s)	164
SatI	GCNGC	4 cut(s)	237, 244, 261, 437
Sau3AI	GATC	3 cut(s)	394, 509, 556
Sau96I	GGNCC	1 cut(s)	222
SchI	GAGTC	1 cut(s)	326
ScrFI	CCNGG	3 cut(s)	226, 332, 469
SetI	ASST	9 cut(s)	12, 141, 174, 205, 238, 336, 446, 476, 578
SmiMI	CAYNNNNRTG	2 cut(s)	284, 461
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	8 cut(s)	14, 71, 78, 145, 205, 406, 500, 541
SsiI	CCGC	4 cut(s)	243, 246, 260, 437
StyD4I	CCNGG	3 cut(s)	224, 330, 467
TaaI	ACNGT	2 cut(s)	190, 487
TaqI	TCGA	2 cut(s)	124, 284
TasI	AATT	8 cut(s)	14, 71, 78, 145, 205, 406, 500, 541
TauI	GCSGC	3 cut(s)	246, 263, 439
TfiI	GAWTC	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	164
Tru9I	TTAA	1 cut(s)	164
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	2 cut(s)	190, 277
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	2 cut(s)	190, 277
TspDTI	ATGAA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	552
XapI	RAATTY	4 cut(s)	14, 71, 406, 541
XmnI	GAANNNNTTC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.