Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

5276576 .. 5277967

Gene Structure 1392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G003330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGCTGCCGGCGGCTCAGAAGCTGTTGGTCACTTCGACGAGGACTTTATCGGTTTCGTTTCAAGGCGAGTTGTACTCGCTCCAGCTGAGTAAAGCGAAGCGAGTGCCGTCTCCAACTGCGAGGAAAGGTACGCTAGAGCGGAGGAAGGCCTCGACGCCGGATCAGAGTGAGAATTCCAGGCCGATGGAGCAGTACTGGTGGCCGGCGAGGTTGAGGCCGGACACTTGTATGACCAAGAGCTTGGATTGTACAGTGGAGAGGAAGACAGTGAATGGATCTGGCTCCAATGTGGTTAGGGACATTGCAAAATTCACTGGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

108

Amino Acids

12.1

Weight (kDa)

9.86

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	142
AciI	CCGC	2 cut(s)	14, 142
AclWI	GGATC	2 cut(s)	171, 286
AcoI	YGGCCR	1 cut(s)	203
AcsI	RAATTY	2 cut(s)	175, 311
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	4 cut(s)	77, 133, 197, 253
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	1 cut(s)	179
AluBI	AGCT	4 cut(s)	7, 25, 88, 243
AluI	AGCT	4 cut(s)	7, 25, 88, 243
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	171, 286
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	4 cut(s)	150, 182, 203, 218
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	2 cut(s)	175, 311
BbsI	GAAGAC	1 cut(s)	272
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	137
BisI	GCNGC	2 cut(s)	8, 15
BlsI	GCNGC	2 cut(s)	9, 16
BmcAI	AGTACT	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	327
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	272
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	68
BsaHI	GRCGYC	1 cut(s)	158
Bse118I	RCCGGY	2 cut(s)	10, 205
Bse1I	ACTGG	2 cut(s)	203, 322
Bse3DI	GCAATG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	2 cut(s)	32, 80
BseNI	ACTGG	2 cut(s)	203, 322
BshFI	GGCC	4 cut(s)	152, 184, 205, 220
BsiSI	CCGG	4 cut(s)	11, 161, 206, 221
BslFI	GGGAC	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	314
BsnI	GGCC	4 cut(s)	152, 184, 205, 220
Bsp1407I	TGTACA	1 cut(s)	251
Bsp143I	GATC	2 cut(s)	163, 278
BspACI	CCGC	2 cut(s)	14, 142
BspANI	GGCC	4 cut(s)	152, 184, 205, 220
BspCNI	CTCAG	2 cut(s)	31, 81
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	171, 286
BsrBI	CCGCTC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	2 cut(s)	10, 205
BsrGI	TGTACA	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	203, 322
BssAI	RCCGGY	2 cut(s)	10, 205
BssMI	GATC	2 cut(s)	163, 278
BssNI	GRCGYC	1 cut(s)	158
Bst2UI	CCWGG	1 cut(s)	181
Bst4CI	ACNGT	2 cut(s)	256, 271
BstACI	GRCGYC	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	251
BstC8I	GCNNGC	2 cut(s)	12, 207
BstDEI	CTNAG	2 cut(s)	18, 89
BstKTI	GATC	2 cut(s)	166, 281
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	163, 278
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstV2I	GAAGAC	1 cut(s)	272
BstX2I	RGATCY	1 cut(s)	278
BstXI	CCANNNNNNTGG	2 cut(s)	187, 244
BstYI	RGATCY	1 cut(s)	278
BsuRI	GGCC	4 cut(s)	152, 184, 205, 220
BtsIMutI	CAGTG	3 cut(s)	261, 276, 315
Cac8I	GCNNGC	2 cut(s)	12, 207
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr10I	RCCGGY	2 cut(s)	10, 205
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	4 cut(s)	76, 132, 196, 252
CviQI	GTAC	4 cut(s)	76, 132, 196, 252
DdeI	CTNAG	2 cut(s)	18, 89
DpnI	GATC	2 cut(s)	165, 280
DpnII	GATC	2 cut(s)	163, 278
EaeI	YGGCCR	1 cut(s)	203
Eco147I	AGGCCT	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	175
EcoRII	CCWGG	1 cut(s)	179
Esp3I	CGTCTC	1 cut(s)	117
FaiI	YATR	1 cut(s)	233
FaqI	GGGAC	1 cut(s)	314
Fnu4HI	GCNGC	2 cut(s)	8, 15
Fsp4HI	GCNGC	2 cut(s)	8, 15
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	2 cut(s)	8, 15
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	4 cut(s)	152, 184, 205, 220
HapII	CCGG	4 cut(s)	11, 161, 206, 221
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	158
HpaII	CCGG	4 cut(s)	11, 161, 206, 221
Hpy188I	TCNGA	2 cut(s)	21, 168
Hpy99I	CGWCG	2 cut(s)	43, 160
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	2 cut(s)	256, 271
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	2 cut(s)	18, 89
Hsp92I	GRCGYC	1 cut(s)	158
KroI	GCCGGC	2 cut(s)	10, 205
KroNI	GCCGGC	2 cut(s)	12, 207
Kzo9I	GATC	2 cut(s)	163, 278
LmnI	GCTCC	4 cut(s)	4, 87, 190, 290
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	165, 280
MbiI	CCGCTC	1 cut(s)	142
MboI	GATC	2 cut(s)	163, 278
MboII	GAAGA	1 cut(s)	277
MflI	RGATCY	1 cut(s)	278
MluCI	AATT	2 cut(s)	175, 311
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	36, 117, 138, 163, 204, 210, 255
MroNI	GCCGGC	2 cut(s)	10, 205
MslI	CAYNNNNRTG	1 cut(s)	230
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	4 cut(s)	11, 161, 206, 221
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	190
NaeI	GCCGGC	2 cut(s)	12, 207
NdeII	GATC	2 cut(s)	163, 278
NgoMIV	GCCGGC	2 cut(s)	10, 205
NlaIV	GGNNCC	1 cut(s)	286
NmuCI	GTSAC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	152
PdiI	GCCGGC	2 cut(s)	12, 207
PkrI	GCNGC	2 cut(s)	9, 16
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	286
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	278
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	4 cut(s)	77, 133, 197, 253
RsaNI	GTAC	4 cut(s)	76, 132, 196, 252
RseI	CAYNNNNRTG	1 cut(s)	230
SatI	GCNGC	2 cut(s)	8, 15
Sau3AI	GATC	2 cut(s)	163, 278
ScaI	AGTACT	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	6 cut(s)	9, 27, 90, 133, 215, 245
SmiMI	CAYNNNNRTG	1 cut(s)	230
Sse9I	AATT	2 cut(s)	175, 311
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	14, 142
SspMI	CTAG	1 cut(s)	137
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	2 cut(s)	256, 271
TaqI	TCGA	2 cut(s)	38, 155
TasI	AATT	2 cut(s)	175, 311
TatI	WGTACW	3 cut(s)	75, 195, 251
TauI	GCSGC	1 cut(s)	17
TscAI	CASTG	3 cut(s)	261, 276, 322
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	31
TspRI	CASTG	3 cut(s)	261, 276, 322
XapI	RAATTY	2 cut(s)	175, 311
XspI	CTAG	1 cut(s)	137
ZrmI	AGTACT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.