Rmu_sc0005220.1_g000018

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005220.1
OG0001505
Physical Location & Seq
Forward (+)
102715 .. 103138
424 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005220.1_g000018.1.cds

Sequence Viewer

Length: 357 bp
atgaggcctaaaatttgtaatctcaatctaatgtggaagaaacgctgggaatcgatggccatcatctcgcctccgtggccatctccgggcgagtcatactcgctccaggtgagtaaagagaagcgagcgccgtctccgactacgaggaaaggcacgccagagcgggggaaggcttcgacgccagtgaggccggatcagagccagaattccaggccgatagagcagtaccggtgttcggagaggttgaggccaaacacttgtatgaccaggagcttggattgtaaggtggagaggaagaaagtgaatggatctggctccaatgtggttagggaattgccggaaatggaagggagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

118

Amino Acids

13.53

Weight (kDa)

10.16

Isoelectric Point (pI)

67.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 163
AciI CCGC 1 cut(s) 163
AclWI GGATC 2 cut(s) 201, 316
AcoI YGGCCR 2 cut(s) 57, 77
AcsI RAATTY 2 cut(s) 12, 205
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 3 cut(s) 86, 164, 235
AgeI ACCGGT 1 cut(s) 228
AjnI CCWGG 3 cut(s) 105, 209, 266
AluBI AGCT 1 cut(s) 273
AluI AGCT 1 cut(s) 273
Alw26I GTCTC 1 cut(s) 138
AlwI GGATC 2 cut(s) 201, 316
AoxI GGCC 6 cut(s) 5, 57, 77, 188, 212, 248
ApoI RAATTY 2 cut(s) 12, 205
AsiGI ACCGGT 1 cut(s) 228
AspLEI GCGC 1 cut(s) 130
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 1 cut(s) 121
BalI TGGCCA 2 cut(s) 59, 79
BccI CCATC 3 cut(s) 49, 68, 88
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 3 cut(s) 107, 211, 268
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 131
BglI GCCNNNNNGGC 2 cut(s) 76, 187
Bme1390I CCNGG 4 cut(s) 87, 107, 211, 268
BmiI GGNNCC 1 cut(s) 316
BmrFI CCNGG 4 cut(s) 87, 107, 211, 268
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpmI CTGGAG 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 59
BsaHI GRCGYC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 228
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 164, 235
Bse118I RCCGGY 1 cut(s) 228
Bse1I ACTGG 1 cut(s) 182
Bse8I GATNNNNATC 1 cut(s) 59
BseBI CCWGG 3 cut(s) 107, 211, 268
BseCI ATCGAT 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 74
BseJI GATNNNNATC 1 cut(s) 59
BseLI CCNNNNNNNGG 3 cut(s) 86, 164, 235
BseNI ACTGG 1 cut(s) 182
BseYI CCCAGC 1 cut(s) 45
BshFI GGCC 6 cut(s) 7, 59, 79, 190, 214, 250
BshTI ACCGGT 1 cut(s) 228
BshVI ATCGAT 1 cut(s) 53
BsiSI CCGG 4 cut(s) 86, 191, 229, 338
BslI CCNNNNNNNGG 3 cut(s) 86, 164, 235
BsmAI GTCTC 1 cut(s) 138
BsmBI CGTCTC 1 cut(s) 138
BsnI GGCC 6 cut(s) 7, 59, 79, 190, 214, 250
Bsp143I GATC 2 cut(s) 193, 308
BspACI CCGC 1 cut(s) 163
BspANI GGCC 6 cut(s) 7, 59, 79, 190, 214, 250
BspDI ATCGAT 1 cut(s) 53
BspLI GGNNCC 1 cut(s) 316
BspPI GGATC 2 cut(s) 201, 316
BsrBI CCGCTC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 228
BsrI ACTGG 1 cut(s) 182
BssAI RCCGGY 1 cut(s) 228
BssECI CCNNGG 1 cut(s) 74
BssMI GATC 2 cut(s) 193, 308
BssNI GRCGYC 1 cut(s) 179
Bst2UI CCWGG 3 cut(s) 107, 211, 268
BstACI GRCGYC 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 126, 155
BstDSI CCRYGG 1 cut(s) 74
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 2 cut(s) 196, 311
BstMAI GTCTC 1 cut(s) 138
BstMBI GATC 2 cut(s) 193, 308
BstMWI GCNNNNNNNGC 3 cut(s) 76, 187, 220
BstNI CCWGG 3 cut(s) 107, 211, 268
BstSCI CCNGG 4 cut(s) 85, 105, 209, 266
BstX2I RGATCY 1 cut(s) 308
BstXI CCANNNNNNTGG 1 cut(s) 274
BstYI RGATCY 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 53
BsuRI GGCC 6 cut(s) 7, 59, 79, 190, 214, 250
BsuTUI ATCGAT 1 cut(s) 53
BtgI CCRYGG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 2 cut(s) 126, 155
CfoI GCGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 228
ClaI ATCGAT 1 cut(s) 53
CseI GACGC 1 cut(s) 187
Csp6I GTAC 1 cut(s) 226
CspAI ACCGGT 1 cut(s) 228
CviQI GTAC 1 cut(s) 226
DpnI GATC 2 cut(s) 195, 310
DpnII GATC 2 cut(s) 193, 308
EaeI YGGCCR 2 cut(s) 57, 77
Eco147I AGGCCT 1 cut(s) 7
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 3 cut(s) 105, 209, 266
Esp3I CGTCTC 1 cut(s) 138
FaiI YATR 2 cut(s) 97, 263
FauI CCCGC 1 cut(s) 156
GlaI GCGC 1 cut(s) 129
GsaI CCCAGC 1 cut(s) 49
GsuI CTGGAG 1 cut(s) 89
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 6 cut(s) 7, 59, 79, 190, 214, 250
HapII CCGG 4 cut(s) 86, 191, 229, 338
HgaI GACGC 1 cut(s) 187
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 179
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HinfI GANTC 2 cut(s) 50, 92
HpaII CCGG 4 cut(s) 86, 191, 229, 338
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 3 cut(s) 138, 198, 238
Hpy99I CGWCG 1 cut(s) 181
HpyAV CCTTC 2 cut(s) 163, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 187, 220
Hsp92I GRCGYC 1 cut(s) 179
HspAI GCGC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 193, 308
LmnI GCTCC 3 cut(s) 108, 270, 320
MalI GATC 2 cut(s) 195, 310
MbiI CCGCTC 1 cut(s) 163
MboI GATC 2 cut(s) 193, 308
MboII GAAGA 2 cut(s) 49, 307
MflI RGATCY 1 cut(s) 308
MlsI TGGCCA 2 cut(s) 59, 79
MluCI AATT 3 cut(s) 12, 205, 332
MluNI TGGCCA 2 cut(s) 59, 79
MlyI GAGTC 1 cut(s) 101
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 6 cut(s) 81, 138, 180, 234, 240, 285
Mox20I TGGCCA 2 cut(s) 59, 79
MscI TGGCCA 2 cut(s) 59, 79
MslI CAYNNNNRTG 1 cut(s) 260
Msp20I TGGCCA 2 cut(s) 59, 79
MspI CCGG 4 cut(s) 86, 191, 229, 338
MspR9I CCNGG 4 cut(s) 87, 107, 211, 268
MvaI CCWGG 3 cut(s) 107, 211, 268
MwoI GCNNNNNNNGC 3 cut(s) 76, 187, 220
NciI CCSGG 1 cut(s) 87
NdeII GATC 2 cut(s) 193, 308
NlaIV GGNNCC 1 cut(s) 316
PceI AGGCCT 1 cut(s) 7
PfeI GAWTC 1 cut(s) 50
PinAI ACCGGT 1 cut(s) 228
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
Psp6I CCWGG 3 cut(s) 105, 209, 266
PspFI CCCAGC 1 cut(s) 45
PspGI CCWGG 3 cut(s) 105, 209, 266
PspN4I GGNNCC 1 cut(s) 316
PsuI RGATCY 1 cut(s) 308
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 260
Sau3AI GATC 2 cut(s) 193, 308
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 4 cut(s) 87, 107, 211, 268
SetI ASST 4 cut(s) 111, 245, 275, 288
SmiMI CAYNNNNRTG 1 cut(s) 260
Sse9I AATT 3 cut(s) 12, 205, 332
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 1 cut(s) 163
StuI AGGCCT 1 cut(s) 7
StyD4I CCNGG 4 cut(s) 85, 105, 209, 266
TaqI TCGA 2 cut(s) 53, 176
TasI AATT 3 cut(s) 12, 205, 332
TfiI GAWTC 1 cut(s) 50
TscAI CASTG 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 63
TspRI CASTG 1 cut(s) 189
XapI RAATTY 2 cut(s) 12, 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.