Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

12100334 .. 12105931

Gene Structure 5598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG136300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGAGCCAAGACGCCAAGAGAAGCGTTCCCGGGATTGTGCCGAAGAAGCCGAATTTCAACGAGCGGAAACCCTCGCCGGCTGTCACCACCTCCACCGGCAAGCCCATATATGCTTTAATACTGATGGAATTTAAGATGATATATTTGGAAGACTGTTGGCTTATGAATTGGGATTACTCTAATTCCTTGTCCGGTGCCATCGAAGCTTTGAGGGCTAGCACGCTCCGCCTTTTAGTGGTTGATGGAGCAAGGGCAACAATTATCTGGTCAGTAGATATCAGTCAGAGAAAAGATATCAATGGTAAAACATACCCAGTATCTCGTTCAAGCATGTTGAGAGAACATTGCAGCTGCACCATCAGTTTCCTTGATTCCAAACAACTTGAAAGTTCAAGACAACCTAGAGGCATCAAGTCATTCAACAATCTGCTACCAATAATAAGAAACTCCCACACACCAACATCACCTGATTTAAACCATTACCATCAGGAAAATGTCAGTAACACTGTTAAGGTTATGGAGCAAACTGTACTTCTTGCTCCAATGCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

184

Amino Acids

20.78

Weight (kDa)

9.45

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QWRF	PF04484	45 - 86	8.7e-07	QWRF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	194
AccBSI	CCGCTC	1 cut(s)	64
AciI	CCGC	2 cut(s)	64, 226
AcsI	RAATTY	2 cut(s)	52, 128
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	58, 327, 386, 393, 421
AluBI	AGCT	2 cut(s)	206, 351
AluI	AGCT	2 cut(s)	206, 351
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	348, 351
ApoI	RAATTY	2 cut(s)	52, 128
AsuC2I	CCSGG	2 cut(s)	30, 31
AsuHPI	GGTGA	2 cut(s)	76, 456
AsuNHI	GCTAGC	1 cut(s)	215
AvaI	CYCGRG	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	194
BbsI	GAAGAC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	338, 360
BccI	CCATC	5 cut(s)	118, 206, 236, 365, 492
BcnI	CCSGG	2 cut(s)	30, 31
BfaI	CTAG	2 cut(s)	216, 402
BisI	GCNGC	2 cut(s)	349, 352
BlsI	GCNGC	2 cut(s)	350, 353
Bme1390I	CCNGG	2 cut(s)	30, 31
BmeT110I	CYCGRG	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	2 cut(s)	30, 31
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	1 cut(s)	417
BmtI	GCTAGC	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	156
BpuMI	CCSGG	2 cut(s)	30, 31
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	191
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	2 cut(s)	76, 95
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	1 cut(s)	343
BseDI	CCNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMI	GCAATG	1 cut(s)	343
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	338, 360
BsgI	GTGCAG	1 cut(s)	337
BshNI	GGYRCC	1 cut(s)	194
BsiHKCI	CYCGRG	1 cut(s)	29
BsiSI	CCGG	4 cut(s)	30, 77, 96, 192
BslI	CCNNNNNNNGG	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	29
BspACI	CCGC	2 cut(s)	64, 226
BspLI	GGNNCC	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	219
BspT107I	GGYRCC	1 cut(s)	194
BsrBI	CCGCTC	1 cut(s)	64
BsrDI	GCAATG	1 cut(s)	343
BsrFI	RCCGGY	2 cut(s)	76, 95
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	2 cut(s)	76, 95
BssECI	CCNNGG	1 cut(s)	29
BssNI	GRCGYC	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	155, 508, 529
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	4 cut(s)	78, 101, 217, 221
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 203, 212, 225
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	28, 29
BstV1I	GCAGC	2 cut(s)	338, 360
BstV2I	GAAGAC	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	4 cut(s)	78, 101, 217, 221
Cfr10I	RCCGGY	2 cut(s)	76, 95
Cfr9I	CCCGGG	1 cut(s)	29
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	1 cut(s)	331
CviJI	RGCY	8 cut(s)	6, 49, 80, 103, 160, 206, 215, 351
CviKI_1	RGCY	8 cut(s)	6, 49, 80, 103, 160, 206, 215, 351
CviQI	GTAC	1 cut(s)	530
DraI	TTTAAA	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	215
Eco32I	GATATC	2 cut(s)	277, 295
Eco88I	CYCGRG	1 cut(s)	29
EcoRV	GATATC	2 cut(s)	277, 295
FaeI	CATG	1 cut(s)	334
FaiI	YATR	8 cut(s)	107, 109, 111, 142, 164, 310, 332, 518
FatI	CATG	1 cut(s)	330
Fnu4HI	GCNGC	2 cut(s)	349, 352
Fsp4HI	GCNGC	2 cut(s)	349, 352
FspBI	CTAG	2 cut(s)	216, 402
GluI	GCNGC	2 cut(s)	349, 352
HapII	CCGG	4 cut(s)	30, 77, 96, 192
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	334
HindIII	AAGCTT	1 cut(s)	204
HinfI	GANTC	1 cut(s)	371
HpaII	CCGG	4 cut(s)	30, 77, 96, 192
HphI	GGTGA	2 cut(s)	76, 456
Hpy188I	TCNGA	1 cut(s)	285
Hpy188III	TCNNGA	2 cut(s)	393, 488
HpyCH4III	ACNGT	3 cut(s)	155, 508, 529
HpyCH4V	TGCA	3 cut(s)	348, 354, 547
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 203, 212, 225
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	334
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
LmnI	GCTCC	4 cut(s)	228, 245, 520, 544
LpnPI	CCDG	8 cut(s)	43, 90, 109, 205, 250, 327, 473, 480
Lsp1109I	GCAGC	2 cut(s)	338, 360
LweI	GCATC	1 cut(s)	417
MaeI	CTAG	2 cut(s)	216, 402
MaeIII	GTNAC	2 cut(s)	82, 500
MbiI	CCGCTC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	55, 161
MluCI	AATT	5 cut(s)	52, 128, 166, 181, 258
MnlI	CCTC	4 cut(s)	82, 100, 204, 398
MroNI	GCCGGC	1 cut(s)	76
MseI	TTAA	4 cut(s)	116, 132, 473, 510
MspA1I	CMGCKG	1 cut(s)	351
MspI	CCGG	4 cut(s)	30, 77, 96, 192
MspR9I	CCNGG	2 cut(s)	30, 31
MwoI	GCNNNNNNNGC	4 cut(s)	46, 203, 212, 225
NaeI	GCCGGC	1 cut(s)	78
NciI	CCSGG	2 cut(s)	30, 31
NgoMIV	GCCGGC	1 cut(s)	76
NheI	GCTAGC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	334
NlaIV	GGNNCC	1 cut(s)	196
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	1 cut(s)	334
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	371
PkrI	GCNGC	2 cut(s)	350, 353
PspN4I	GGNNCC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	351
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
SaqAI	TTAA	4 cut(s)	116, 132, 473, 510
SatI	GCNGC	2 cut(s)	349, 352
ScrFI	CCNGG	2 cut(s)	30, 31
SetI	ASST	6 cut(s)	92, 208, 353, 403, 469, 516
SfaNI	GCATC	1 cut(s)	417
SmaI	CCCGGG	1 cut(s)	31
Sse9I	AATT	5 cut(s)	52, 128, 166, 181, 258
SsiI	CCGC	2 cut(s)	64, 226
SspMI	CTAG	2 cut(s)	216, 402
StyD4I	CCNGG	2 cut(s)	28, 29
TaaI	ACNGT	3 cut(s)	155, 508, 529
TaqI	TCGA	1 cut(s)	201
TasI	AATT	5 cut(s)	52, 128, 166, 181, 258
TatI	WGTACW	1 cut(s)	529
TfiI	GAWTC	1 cut(s)	371
Tru1I	TTAA	4 cut(s)	116, 132, 473, 510
Tru9I	TTAA	4 cut(s)	116, 132, 473, 510
TscAI	CASTG	1 cut(s)	511
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	348, 351
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	179
TspMI	CCCGGG	1 cut(s)	29
TspRI	CASTG	1 cut(s)	511
XapI	RAATTY	2 cut(s)	52, 128
XceI	RCATGY	1 cut(s)	334
XmaI	CCCGGG	1 cut(s)	29
XspI	CTAG	2 cut(s)	216, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.