Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Forward (+)

14336382 .. 14339319

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG162100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCAGTTTTTAGTTTTTTTTATTCCCATTCTGCCCTTAAGTCAAAAATGCTAAAGCTCAAATTTTCTCTCTCTTGTTCTTGGCTATTTCAGAGAGAGACAAAGGGAAGGAGCAAAAAATTTCCAATTCCAGTCGAATTCTCAAGCCAGCCTTCTCAGAACATCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTGGAGAGGAGGAGAACGGTCACTCCTCGACCTAATTCTTTGGATTTGAGGGCCGGCAATGGAGCTGCTGGCGGCGGTGAAATGTCGGCGTCTCAGAAGCTGTTGGTCACTTCGACGAGGAGTTTATCAGTTTCGTTTCAGGGCGAGTCGTACGCGCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

126

Amino Acids

14.09

Weight (kDa)

10.68

Isoelectric Point (pI)

60.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	374
AciI	CCGC	2 cut(s)	291, 294
AcsI	RAATTY	3 cut(s)	62, 119, 137
AcyI	GRCGYC	1 cut(s)	308
AfaI	GTAC	1 cut(s)	371
AflII	CTTAAG	1 cut(s)	38
AgsI	TTSAA	1 cut(s)	182
AloI	GAACNNNNNNTCC	2 cut(s)	226, 258
AluBI	AGCT	3 cut(s)	58, 284, 319
AluI	AGCT	3 cut(s)	58, 284, 319
Alw26I	GTCTC	2 cut(s)	92, 315
AlwNI	CAGNNNCTG	1 cut(s)	319
AoxI	GGCC	1 cut(s)	270
ApeKI	GCWGC	1 cut(s)	284
ApoI	RAATTY	3 cut(s)	62, 119, 137
Asp700I	GAANNNNTTC	1 cut(s)	186
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	270
AsuHPI	GGTGA	1 cut(s)	308
BbvI	GCAGC	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	92, 315
BfaI	CTAG	1 cut(s)	379
BfrI	CTTAAG	1 cut(s)	38
BisI	GCNGC	2 cut(s)	285, 292
BlsI	GCNGC	2 cut(s)	286, 293
BmgT120I	GGNCC	1 cut(s)	270
BmiI	GGNNCC	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	127
BsaHI	GRCGYC	1 cut(s)	308
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	131
Bse3DI	GCAATG	1 cut(s)	283
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	170, 326
BseNI	ACTGG	1 cut(s)	131
BseRI	GAGGAG	4 cut(s)	234, 241, 244, 352
BseXI	GCAGC	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	273
BsiWI	CGTACG	1 cut(s)	369
BsmAI	GTCTC	2 cut(s)	92, 315
BsmBI	CGTCTC	1 cut(s)	315
BsnI	GGCC	1 cut(s)	272
BspACI	CCGC	2 cut(s)	291, 294
BspANI	GGCC	1 cut(s)	272
BspCNI	CTCAG	2 cut(s)	169, 325
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	1 cut(s)	189
BspTI	CTTAAG	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	283
BsrFI	RCCGGY	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	272
BssNI	GRCGYC	1 cut(s)	308
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	177
BstACI	GRCGYC	1 cut(s)	308
BstAFI	CTTAAG	1 cut(s)	38
BstC8I	GCNNGC	3 cut(s)	149, 274, 289
BstDEI	CTNAG	2 cut(s)	156, 312
BstFNI	CGCG	1 cut(s)	374
BstHHI	GCGC	1 cut(s)	376
BstMAI	GTCTC	2 cut(s)	92, 315
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	272
Cac8I	GCNNGC	3 cut(s)	149, 274, 289
CaiI	CAGNNNCTG	1 cut(s)	319
CfoI	GCGC	1 cut(s)	376
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	1 cut(s)	270
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	370
CviJI	RGCY	9 cut(s)	58, 85, 147, 151, 170, 209, 272, 284, 319
CviKI_1	RGCY	9 cut(s)	58, 85, 147, 151, 170, 209, 272, 284, 319
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	2 cut(s)	156, 312
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
EcoRI	GAATTC	1 cut(s)	137
Esp3I	CGTCTC	1 cut(s)	315
FalI	AAGNNNNNCTT	2 cut(s)	136, 168
Fnu4HI	GCNGC	2 cut(s)	285, 292
Fsp4HI	GCNGC	2 cut(s)	285, 292
FspBI	CTAG	1 cut(s)	379
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	2 cut(s)	285, 292
HaeIII	GGCC	1 cut(s)	272
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	297
HhaI	GCGC	1 cut(s)	376
Hin1I	GRCGYC	1 cut(s)	308
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	1 cut(s)	365
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	93, 159, 315
Hpy99I	CGWCG	1 cut(s)	337
HpyAV	CCTTC	3 cut(s)	102, 162, 211
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	1 cut(s)	199
HpyF3I	CTNAG	2 cut(s)	156, 312
Hsp92I	GRCGYC	1 cut(s)	308
HspAI	GCGC	1 cut(s)	374
KroI	GCCGGC	1 cut(s)	272
KroNI	GCCGGC	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	111, 281
LpnPI	CCDG	5 cut(s)	144, 161, 273, 286, 344
Lsp1109I	GCAGC	1 cut(s)	271
MaeI	CTAG	1 cut(s)	379
MaeIII	GTNAC	2 cut(s)	238, 325
MboII	GAAGA	1 cut(s)	194
MluCI	AATT	5 cut(s)	62, 119, 126, 137, 253
MlyI	GAGTC	1 cut(s)	374
MnlI	CCTC	6 cut(s)	178, 219, 222, 255, 261, 330
MroNI	GCCGGC	1 cut(s)	272
MroXI	GAANNNNTTC	1 cut(s)	186
MseI	TTAA	1 cut(s)	39
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	1 cut(s)	273
MvnI	CGCG	1 cut(s)	374
NaeI	GCCGGC	1 cut(s)	274
NgoMIV	GCCGGC	1 cut(s)	272
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	2 cut(s)	238, 325
PdiI	GCCGGC	1 cut(s)	274
PdmI	GAANNNNTTC	1 cut(s)	186
Pfl23II	CGTACG	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	286, 293
PleI	GAGTC	1 cut(s)	373
PpsI	GAGTC	1 cut(s)	373
PspLI	CGTACG	1 cut(s)	369
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	270
PstNI	CAGNNNCTG	1 cut(s)	319
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	285, 292
Sau96I	GGNCC	1 cut(s)	270
SchI	GAGTC	1 cut(s)	374
SetI	ASST	6 cut(s)	60, 189, 222, 253, 286, 321
SmlI	CTYRAG	2 cut(s)	38, 142
SmoI	CTYRAG	2 cut(s)	38, 142
Sse9I	AATT	5 cut(s)	62, 119, 126, 137, 253
SsiI	CCGC	2 cut(s)	291, 294
SspMI	CTAG	1 cut(s)	379
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	4 cut(s)	135, 172, 247, 332
TasI	AATT	5 cut(s)	62, 119, 126, 137, 253
TauI	GCSGC	1 cut(s)	294
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	238, 325
TseI	GCWGC	1 cut(s)	284
Tsp45I	GTSAC	2 cut(s)	238, 325
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	3 cut(s)	62, 119, 137
XmnI	GAANNNNTTC	1 cut(s)	186
XspI	CTAG	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.