Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003927.1

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Reverse (-)

11955 .. 12551

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003927.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgctaaagctcaaattttctctctcttgttcttggctatttcggagagagacaaagggaaggagcaaaaaatttccaattccagtcggattctcaagccagccttctcagaacatcaaggctcgattgcttgaagaggttcccaagttgcagagattggctgtaaagaaggtggagaggaggagaacggtcactcctcgacctaattctttggatttgaaggccgggaatggagctatcagcggcggtgaaatgtcggcggctcagaagctgttggtcacttcgacaaggagtttatcggtttcgtttcaaggtaagtcgtacgcgctccaggtgagtaaagcgaagcgactgccgtctccgactacgaggaaaggcaccccggagcgagggaaggcttcgacgccggcgaggcaagatcagagcgagaattccagactgatggagcagtaccggtggccgccgaggttgaggccggacacttgtatgaccaggagcttggattgtacggcggagatgaagaaattgaatggatctggctccaatgtggttagggcattacaaaattcactagggatgatcttgatgggagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

198

Amino Acids

22.02

Weight (kDa)

11.0

Isoelectric Point (pI)

59.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccII	CGCG	1 cut(s)	326
AciI	CCGC	5 cut(s)	243, 246, 260, 461, 512
AclWI	GGATC	1 cut(s)	541
AcoI	YGGCCR	1 cut(s)	458
AcsI	RAATTY	4 cut(s)	14, 71, 430, 565
AcyI	GRCGYC	1 cut(s)	404
AfaI	GTAC	3 cut(s)	323, 452, 508
AfiI	CCNNNNNNNGG	1 cut(s)	389
AgeI	ACCGGT	1 cut(s)	453
AgsI	TTSAA	4 cut(s)	134, 220, 311, 529
AjnI	CCWGG	2 cut(s)	330, 491
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	4 cut(s)	10, 236, 271, 498
AluI	AGCT	4 cut(s)	10, 236, 271, 498
Alw26I	GTCTC	2 cut(s)	44, 363
AlwI	GGATC	1 cut(s)	541
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	3 cut(s)	222, 458, 473
ApoI	RAATTY	4 cut(s)	14, 71, 430, 565
AsiGI	ACCGGT	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	328
AsuC2I	CCSGG	2 cut(s)	226, 383
AsuHPI	GGTGA	2 cut(s)	260, 346
BanI	GGYRCC	1 cut(s)	377
BccI	CCATC	2 cut(s)	436, 580
BceAI	ACGGC	2 cut(s)	340, 525
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BciT130I	CCWGG	2 cut(s)	332, 493
BcnI	CCSGG	2 cut(s)	226, 383
BcoDI	GTCTC	2 cut(s)	44, 363
BfaI	CTAG	1 cut(s)	572
BglI	GCCNNNNNGGC	1 cut(s)	412
BisI	GCNGC	3 cut(s)	244, 261, 461
BlsI	GCNGC	3 cut(s)	245, 262, 462
Bme1390I	CCNGG	4 cut(s)	226, 332, 383, 493
BmiI	GGNNCC	3 cut(s)	141, 379, 541
BmrFI	CCNGG	4 cut(s)	226, 332, 383, 493
BoxI	GACNNNNGTC	1 cut(s)	355
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	79
BpuMI	CCSGG	2 cut(s)	226, 383
BsaHI	GRCGYC	1 cut(s)	404
BsaJI	CCNNGG	2 cut(s)	381, 464
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	389
Bse118I	RCCGGY	2 cut(s)	406, 453
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	332, 493
BseDI	CCNNGG	2 cut(s)	381, 464
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	1 cut(s)	389
BseMII	CTCAG	2 cut(s)	122, 278
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	3 cut(s)	186, 193, 196
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	3 cut(s)	224, 460, 475
BshNI	GGYRCC	1 cut(s)	377
BshTI	ACCGGT	1 cut(s)	453
BsiSI	CCGG	5 cut(s)	225, 383, 407, 454, 476
BsiWI	CGTACG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	389
BsmAI	GTCTC	2 cut(s)	44, 363
BsmBI	CGTCTC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	224, 460, 475
Bsp143I	GATC	3 cut(s)	418, 533, 579
BspACI	CCGC	5 cut(s)	243, 246, 260, 461, 512
BspANI	GGCC	3 cut(s)	224, 460, 475
BspCNI	CTCAG	2 cut(s)	121, 277
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	3 cut(s)	141, 379, 541
BspPI	GGATC	1 cut(s)	541
BspT107I	GGYRCC	1 cut(s)	377
BsrFI	RCCGGY	2 cut(s)	406, 453
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	2 cut(s)	406, 453
BssECI	CCNNGG	2 cut(s)	381, 464
BssMI	GATC	3 cut(s)	418, 533, 579
BssNI	GRCGYC	1 cut(s)	404
Bst2UI	CCWGG	2 cut(s)	332, 493
Bst4CI	ACNGT	1 cut(s)	190
Bst6I	CTCTTC	1 cut(s)	129
BstACI	GRCGYC	1 cut(s)	404
BstC8I	GCNNGC	2 cut(s)	101, 408
BstDEI	CTNAG	2 cut(s)	108, 264
BstF5I	GGATG	1 cut(s)	582
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	421, 536, 582
BstMAI	GTCTC	2 cut(s)	44, 363
BstMBI	GATC	3 cut(s)	418, 533, 579
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	2 cut(s)	332, 493
BstPAI	GACNNNNGTC	1 cut(s)	355
BstSCI	CCNGG	4 cut(s)	224, 330, 381, 491
BstUI	CGCG	1 cut(s)	326
BstX2I	RGATCY	1 cut(s)	533
BstXI	CCANNNNNNTGG	2 cut(s)	442, 499
BstYI	RGATCY	1 cut(s)	533
BsuRI	GGCC	3 cut(s)	224, 460, 475
BtsCI	GGATG	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	101, 408
CaiI	CAGNNNCTG	1 cut(s)	271
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	2 cut(s)	406, 453
CseI	GACGC	1 cut(s)	412
Csp6I	GTAC	3 cut(s)	322, 451, 507
CspAI	ACCGGT	1 cut(s)	453
CviQI	GTAC	3 cut(s)	322, 451, 507
DdeI	CTNAG	2 cut(s)	108, 264
DpnI	GATC	3 cut(s)	420, 535, 581
DpnII	GATC	3 cut(s)	418, 533, 579
EaeI	YGGCCR	1 cut(s)	458
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	527
EcoRI	GAATTC	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	330, 491
Esp3I	CGTCTC	1 cut(s)	363
FaiI	YATR	1 cut(s)	488
FalI	AAGNNNNNCTT	2 cut(s)	88, 120
Fnu4HI	GCNGC	3 cut(s)	244, 261, 461
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	3 cut(s)	244, 261, 461
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	3 cut(s)	244, 261, 461
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	3 cut(s)	224, 460, 475
HapII	CCGG	5 cut(s)	225, 383, 407, 454, 476
HgaI	GACGC	1 cut(s)	412
HhaI	GCGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	404
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	1 cut(s)	90
HpaII	CCGG	5 cut(s)	225, 383, 407, 454, 476
HphI	GGTGA	2 cut(s)	260, 346
Hpy188I	TCNGA	6 cut(s)	45, 89, 111, 267, 363, 423
Hpy188III	TCNNGA	2 cut(s)	435, 583
Hpy99I	CGWCG	1 cut(s)	406
HpyAV	CCTTC	5 cut(s)	54, 114, 163, 214, 388
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	2 cut(s)	108, 264
Hsp92I	GRCGYC	1 cut(s)	404
HspAI	GCGC	1 cut(s)	326
KroI	GCCGGC	1 cut(s)	406
KroNI	GCCGGC	1 cut(s)	408
Kzo9I	GATC	3 cut(s)	418, 533, 579
LmnI	GCTCC	7 cut(s)	63, 233, 333, 385, 445, 495, 545
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	2 cut(s)	190, 277
MalI	GATC	3 cut(s)	420, 535, 581
MboI	GATC	3 cut(s)	418, 533, 579
MboII	GAAGA	2 cut(s)	146, 532
MflI	RGATCY	1 cut(s)	533
MluCI	AATT	7 cut(s)	14, 71, 78, 205, 430, 524, 565
MmeI	TCCRAC	2 cut(s)	67, 386
MnlI	CCTC	9 cut(s)	130, 171, 174, 207, 363, 383, 405, 459, 465
MreI	CGCCGGCG	1 cut(s)	406
MroNI	GCCGGC	1 cut(s)	406
MroXI	GAANNNNTTC	1 cut(s)	138
MslI	CAYNNNNRTG	1 cut(s)	485
MspA1I	CMGCKG	1 cut(s)	243
MspI	CCGG	5 cut(s)	225, 383, 407, 454, 476
MspR9I	CCNGG	4 cut(s)	226, 332, 383, 493
MvaI	CCWGG	2 cut(s)	332, 493
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	412
NaeI	GCCGGC	1 cut(s)	408
NciI	CCSGG	2 cut(s)	226, 383
NdeII	GATC	3 cut(s)	418, 533, 579
NgoMIV	GCCGGC	1 cut(s)	406
NlaIV	GGNNCC	3 cut(s)	141, 379, 541
NmeAIII	GCCGAG	1 cut(s)	489
NmuCI	GTSAC	2 cut(s)	190, 277
PcsI	WCGNNNNNNNCGW	1 cut(s)	407
PdiI	GCCGGC	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	90
Pfl23II	CGTACG	1 cut(s)	321
PinAI	ACCGGT	1 cut(s)	453
PkrI	GCNGC	3 cut(s)	245, 262, 462
PshAI	GACNNNNGTC	1 cut(s)	355
Psp6I	CCWGG	2 cut(s)	330, 491
PspGI	CCWGG	2 cut(s)	330, 491
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	141, 379, 541
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	533
RsaI	GTAC	3 cut(s)	323, 452, 508
RsaNI	GTAC	3 cut(s)	322, 451, 507
RseI	CAYNNNNRTG	1 cut(s)	485
SatI	GCNGC	3 cut(s)	244, 261, 461
Sau3AI	GATC	3 cut(s)	418, 533, 579
ScrFI	CCNGG	4 cut(s)	226, 332, 383, 493
SgrAI	CRCCGGYG	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	7 cut(s)	14, 71, 78, 205, 430, 524, 565
SsiI	CCGC	5 cut(s)	243, 246, 260, 461, 512
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	4 cut(s)	224, 330, 381, 491
TaaI	ACNGT	1 cut(s)	190
TaqI	TCGA	4 cut(s)	124, 199, 284, 401
TasI	AATT	7 cut(s)	14, 71, 78, 205, 430, 524, 565
TauI	GCSGC	3 cut(s)	246, 263, 463
TfiI	GAWTC	1 cut(s)	90
TseFI	GTSAC	2 cut(s)	190, 277
Tsp45I	GTSAC	2 cut(s)	190, 277
TspDTI	ATGAA	1 cut(s)	533
XapI	RAATTY	4 cut(s)	14, 71, 430, 565
XmnI	GAANNNNTTC	1 cut(s)	138
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.