Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004761.1

Orthogroup ID

OG0001505

Physical Location & Seq

Genomic Coordinates Forward (+)

52358 .. 52693

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004761.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

atggagctgccggcggctcagaagctgttggtcacttcgacgaggactttatcggtttcgtttcaaggcgagttgtactcgctccagctgagtaaagcgaagcgattgccgtctccaactgcaaggaaaggtacgctaaagcggaggaaggcctcgatgcctgcgaggccggatcagagtgagaattccaggccgatggagcagtacaggtggtcggcgaggttgaggccggacacttgtatgaccaggagcttggattgtacggtggagaggaagaaagtgaatggatctggctccaatgtggttagggacattgcaaaattcactggggaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QWRF

Protein Analysis

111

Amino Acids

12.49

Weight (kDa)

10.56

Isoelectric Point (pI)

57.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43155
fragaria_vesca	FvH4_2g33270 FvH4_2g33270
malus_domestica	MD08G1086900.v1.1 MD15G1071600.v1.1
prunus_persica	Prupe.1G424500_v2.0.a1 Prupe.1G424500_v2.0.a1
pyrus_communis	pycom08g07120 pycom15g06740
rosa_chinensis	RchiOBHm_Chr2g0099741 RchiOBHm_Chr2g0102601 RchiOBHm_Chr4g0405481 RchiOBHm_Chr6g0309371
rosa_laevigata	RLG00000002924 RLG00000007993 RLG00000010572
rosa_multiflora	Rmu_sc0000546.1_g000079 Rmu_sc0002902.1_g000046 Rmu_sc0003712.1_g000003 Rmu_sc0003927.1_g000003 Rmu_sc0004368.1_g000008 Rmu_sc0004761.1_g000011 Rmu_sc0004761.1_g000012 Rmu_sc0005220.1_g000018 Rmu_sc0010044.1_g000008 Rmu_sc0012466.1_g000001
rosa_roxburghii	Rroxscaffold_5G00360180 Rroxscaffold_7G00159460
rosa_rugosa	Rorug05G0556800 Rorug06G0026100 Rorug06G0371500 Rorug06G0371500 Rorug06G0371600
rosa_samantha	Rh2CG136300 Rh2CG162100 Rh4AG120900 Rh4BG047100 Rh4CG139600 Rh5CG247500 Rh5CG247600 Rh6AG319800 Rh6AG484600 Rh6BG212300 Rh6BG493900 Rh6CG498800 Rh6DG485100 Rh7BG227100 Rh7BG236700
rosa_wichuraiana	Rw1G000140 Rw6G003330 Rw6G042210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	14, 142
AclWI	GGATC	2 cut(s)	180, 295
AcsI	RAATTY	2 cut(s)	184, 320
AfaI	GTAC	4 cut(s)	77, 133, 206, 262
AgsI	TTSAA	1 cut(s)	65
AjnI	CCWGG	2 cut(s)	188, 245
AluBI	AGCT	4 cut(s)	7, 25, 88, 252
AluI	AGCT	4 cut(s)	7, 25, 88, 252
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	2 cut(s)	180, 295
AlwNI	CAGNNNCTG	1 cut(s)	25
AoxI	GGCC	4 cut(s)	150, 167, 191, 227
ApeKI	GCWGC	1 cut(s)	7
ApoI	RAATTY	2 cut(s)	184, 320
BccI	CCATC	1 cut(s)	190
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	2 cut(s)	190, 247
BcoDI	GTCTC	1 cut(s)	117
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	8, 15
BlsI	GCNGC	2 cut(s)	9, 16
Bme1390I	CCNGG	2 cut(s)	190, 247
BmiI	GGNNCC	1 cut(s)	295
BmrFI	CCNGG	2 cut(s)	190, 247
BmrI	ACTGGG	1 cut(s)	336
BmsI	GCATC	1 cut(s)	147
BmuI	ACTGGG	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
BpmI	CTGGAG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	10
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	2 cut(s)	190, 247
BseMI	GCAATG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	32, 80
BseNI	ACTGG	1 cut(s)	331
BshFI	GGCC	4 cut(s)	152, 169, 193, 229
BsiSI	CCGG	3 cut(s)	11, 170, 230
BslFI	GGGAC	1 cut(s)	323
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	4 cut(s)	152, 169, 193, 229
Bsp143I	GATC	2 cut(s)	172, 287
BspACI	CCGC	2 cut(s)	14, 142
BspANI	GGCC	4 cut(s)	152, 169, 193, 229
BspCNI	CTCAG	2 cut(s)	31, 81
BspLI	GGNNCC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	180, 295
BsrDI	GCAATG	1 cut(s)	312
BsrFI	RCCGGY	1 cut(s)	10
BsrI	ACTGG	1 cut(s)	331
BssAI	RCCGGY	1 cut(s)	10
BssMI	GATC	2 cut(s)	172, 287
Bst2UI	CCWGG	2 cut(s)	190, 247
Bst4CI	ACNGT	1 cut(s)	265
BstC8I	GCNNGC	2 cut(s)	12, 162
BstDEI	CTNAG	2 cut(s)	18, 89
BstKTI	GATC	2 cut(s)	175, 290
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	2 cut(s)	172, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 199
BstNI	CCWGG	2 cut(s)	190, 247
BstSCI	CCNGG	2 cut(s)	188, 245
BstX2I	RGATCY	1 cut(s)	287
BstXI	CCANNNNNNTGG	2 cut(s)	196, 253
BstYI	RGATCY	1 cut(s)	287
BsuRI	GGCC	4 cut(s)	152, 169, 193, 229
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	12, 162
CaiI	CAGNNNCTG	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	10
Csp6I	GTAC	4 cut(s)	76, 132, 205, 261
CviQI	GTAC	4 cut(s)	76, 132, 205, 261
DdeI	CTNAG	2 cut(s)	18, 89
DpnI	GATC	2 cut(s)	174, 289
DpnII	GATC	2 cut(s)	172, 287
Eco147I	AGGCCT	1 cut(s)	152
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	2 cut(s)	188, 245
Esp3I	CGTCTC	1 cut(s)	117
FaiI	YATR	1 cut(s)	242
FaqI	GGGAC	1 cut(s)	323
Fnu4HI	GCNGC	2 cut(s)	8, 15
Fsp4HI	GCNGC	2 cut(s)	8, 15
GluI	GCNGC	2 cut(s)	8, 15
GsuI	CTGGAG	1 cut(s)	68
HaeIII	GGCC	4 cut(s)	152, 169, 193, 229
HapII	CCGG	3 cut(s)	11, 170, 230
HpaII	CCGG	3 cut(s)	11, 170, 230
Hpy188I	TCNGA	2 cut(s)	21, 177
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4V	TGCA	2 cut(s)	122, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 199
HpyF3I	CTNAG	2 cut(s)	18, 89
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	172, 287
LmnI	GCTCC	5 cut(s)	4, 87, 199, 249, 299
LweI	GCATC	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	174, 289
MboI	GATC	2 cut(s)	172, 287
MboII	GAAGA	1 cut(s)	286
MflI	RGATCY	1 cut(s)	287
MluCI	AATT	2 cut(s)	184, 320
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	7 cut(s)	36, 138, 159, 163, 213, 219, 264
MroNI	GCCGGC	1 cut(s)	10
MslI	CAYNNNNRTG	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	3 cut(s)	11, 170, 230
MspR9I	CCNGG	2 cut(s)	190, 247
MvaI	CCWGG	2 cut(s)	190, 247
MwoI	GCNNNNNNNGC	2 cut(s)	166, 199
NaeI	GCCGGC	1 cut(s)	12
NdeII	GATC	2 cut(s)	172, 287
NgoMIV	GCCGGC	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	295
NmuCI	GTSAC	1 cut(s)	31
PceI	AGGCCT	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PdiI	GCCGGC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	9, 16
Psp6I	CCWGG	2 cut(s)	188, 245
PspGI	CCWGG	2 cut(s)	188, 245
PspN4I	GGNNCC	1 cut(s)	295
PstNI	CAGNNNCTG	1 cut(s)	25
PsuI	RGATCY	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	4 cut(s)	77, 133, 206, 262
RsaNI	GTAC	4 cut(s)	76, 132, 205, 261
RseI	CAYNNNNRTG	1 cut(s)	239
SatI	GCNGC	2 cut(s)	8, 15
Sau3AI	GATC	2 cut(s)	172, 287
ScrFI	CCNGG	2 cut(s)	190, 247
SetI	ASST	7 cut(s)	9, 27, 90, 133, 212, 224, 254
SfaNI	GCATC	1 cut(s)	147
SmiMI	CAYNNNNRTG	1 cut(s)	239
Sse9I	AATT	2 cut(s)	184, 320
SseBI	AGGCCT	1 cut(s)	152
SsiI	CCGC	2 cut(s)	14, 142
StuI	AGGCCT	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	188, 245
TaaI	ACNGT	1 cut(s)	265
TaqI	TCGA	2 cut(s)	38, 155
TasI	AATT	2 cut(s)	184, 320
TatI	WGTACW	2 cut(s)	75, 204
TauI	GCSGC	1 cut(s)	17
TscAI	CASTG	1 cut(s)	331
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	31
TspRI	CASTG	1 cut(s)	331
XapI	RAATTY	2 cut(s)	184, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.