RLG00000002924

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001505
Physical Location & Seq
Forward (+)
41822310 .. 41823125
816 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002924

Sequence Viewer

Length: 489 bp
ATGCAAAATTGTGGAAGGTTTGCTAATGAAAGTGGATGGATGGTAGTGTCTTTGACTTTTGGTGGTGGAGGGATGAGGTTGATATGGGATTTTGGCAGTGGGTTCAGAACTGGATGTGGTGGAGGATTGGTGCCTTGGTGGTCGTCTGGGTTAGTGGAGGATTTTAGAAGTTGGTTAAGAGCAGTAGGCCCATTGCATATTAGAATTAAAGCGAGGGAGGGCGAGTCGTACTCACTCCAAGTGAGTAAAGCGAAGAGAGCGCCGTCTCTGACTGCAAGGAAAGGCACGCTAGAGCGTAGGAAGGCTTTGACACCAGCGAGGCCGGATCAGAGCGAGAATTCCAGGCCAATAGAGCAGTACCGGTGGTCGGAGAGGTTGAGGCCGGACACTTGTATGACTAGGAGCTTGGATTGTACCGTAGAGAGGAAGAAAGTGAATGGATCTAGCTCCAATGTGGTTAGGGAATTGCCGGCAACGGAAGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

163

Amino Acids

18.12

Weight (kDa)

10.27

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AclWI GGATC 2 cut(s) 333, 448
AcsI RAATTY 1 cut(s) 337
AfaI GTAC 3 cut(s) 230, 359, 415
AfiI CCNNNNNNNGG 2 cut(s) 367, 423
AgeI ACCGGT 1 cut(s) 360
AjnI CCWGG 1 cut(s) 341
AluBI AGCT 2 cut(s) 405, 447
AluI AGCT 2 cut(s) 405, 447
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 2 cut(s) 333, 448
AoxI GGCC 4 cut(s) 187, 320, 344, 380
ApoI RAATTY 1 cut(s) 337
AsiGI ACCGGT 1 cut(s) 360
AspLEI GCGC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 188
BanI GGYRCC 1 cut(s) 130
BccI CCATC 2 cut(s) 30, 34
BceAI ACGGC 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 3 cut(s) 290, 399, 444
BfoI RGCGCY 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 343
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BsaJI CCNNGG 1 cut(s) 134
BsaWI WCCGGW 1 cut(s) 360
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 209, 239
Bsc4I CCNNNNNNNGG 2 cut(s) 367, 423
Bse118I RCCGGY 2 cut(s) 360, 469
Bse1I ACTGG 1 cut(s) 115
Bse3DI GCAATG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 4 cut(s) 41, 45, 78, 119
BseLI CCNNNNNNNGG 2 cut(s) 367, 423
BseMI GCAATG 1 cut(s) 191
BseNI ACTGG 1 cut(s) 115
BshFI GGCC 4 cut(s) 189, 322, 346, 382
BshNI GGYRCC 1 cut(s) 130
BshTI ACCGGT 1 cut(s) 360
BsiSI CCGG 4 cut(s) 323, 361, 383, 470
BslI CCNNNNNNNGG 2 cut(s) 367, 423
BsmAI GTCTC 1 cut(s) 270
BsmBI CGTCTC 1 cut(s) 270
BsnI GGCC 4 cut(s) 189, 322, 346, 382
Bsp143I GATC 2 cut(s) 325, 440
BspANI GGCC 4 cut(s) 189, 322, 346, 382
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 2 cut(s) 333, 448
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 191
BsrFI RCCGGY 2 cut(s) 360, 469
BsrI ACTGG 1 cut(s) 115
BssAI RCCGGY 2 cut(s) 360, 469
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 2 cut(s) 325, 440
BssT1I CCWWGG 1 cut(s) 134
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 1 cut(s) 418
Bst6I CTCTTC 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 287, 471
BstF5I GGATG 4 cut(s) 41, 45, 78, 119
BstH2I RGCGCY 1 cut(s) 263
BstHHI GCGC 1 cut(s) 262
BstKTI GATC 2 cut(s) 328, 443
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 2 cut(s) 325, 440
BstMWI GCNNNNNNNGC 2 cut(s) 257, 352
BstNI CCWGG 1 cut(s) 343
BstSCI CCNGG 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
BsuRI GGCC 4 cut(s) 189, 322, 346, 382
BtsCI GGATG 4 cut(s) 41, 45, 78, 119
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 1 cut(s) 103
Cac8I GCNNGC 2 cut(s) 287, 471
CfoI GCGC 1 cut(s) 262
Cfr10I RCCGGY 2 cut(s) 360, 469
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 3 cut(s) 229, 358, 414
CspAI ACCGGT 1 cut(s) 360
CviJI RGCY 7 cut(s) 189, 305, 322, 346, 382, 405, 447
CviKI_1 RGCY 7 cut(s) 189, 305, 322, 346, 382, 405, 447
CviQI GTAC 3 cut(s) 229, 358, 414
DpnI GATC 2 cut(s) 327, 442
DpnII GATC 2 cut(s) 325, 440
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 134
EcoRI GAATTC 1 cut(s) 337
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 270
FaiI YATR 3 cut(s) 85, 198, 395
FokI GGATG 4 cut(s) 48, 52, 85, 126
FspBI CTAG 3 cut(s) 290, 399, 444
GlaI GCGC 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 263
HaeIII GGCC 4 cut(s) 189, 322, 346, 382
HapII CCGG 4 cut(s) 323, 361, 383, 470
HhaI GCGC 1 cut(s) 262
Hin6I GCGC 1 cut(s) 260
HinP1I GCGC 1 cut(s) 260
HinfI GANTC 1 cut(s) 224
HpaII CCGG 4 cut(s) 323, 361, 383, 470
Hpy188I TCNGA 4 cut(s) 107, 270, 330, 370
HpyAV CCTTC 3 cut(s) 9, 295, 473
HpyCH4III ACNGT 1 cut(s) 418
HpyCH4V TGCA 3 cut(s) 4, 196, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 257, 352
HspAI GCGC 1 cut(s) 260
KroI GCCGGC 1 cut(s) 469
KroNI GCCGGC 1 cut(s) 471
Kzo9I GATC 2 cut(s) 325, 440
LmnI GCTCC 2 cut(s) 402, 452
LpnPI CCDG 9 cut(s) 96, 132, 327, 328, 336, 355, 374, 396, 483
MaeI CTAG 3 cut(s) 290, 399, 444
MalI GATC 2 cut(s) 327, 442
MboI GATC 2 cut(s) 325, 440
MboII GAAGA 2 cut(s) 265, 439
MflI RGATCY 1 cut(s) 440
MluCI AATT 4 cut(s) 7, 204, 337, 464
MlyI GAGTC 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 348
MroNI GCCGGC 1 cut(s) 469
MseI TTAA 2 cut(s) 176, 207
MslI CAYNNNNRTG 1 cut(s) 392
MspI CCGG 4 cut(s) 323, 361, 383, 470
MspR9I CCNGG 1 cut(s) 343
MvaI CCWGG 1 cut(s) 343
MwoI GCNNNNNNNGC 2 cut(s) 257, 352
NaeI GCCGGC 1 cut(s) 471
NdeII GATC 2 cut(s) 325, 440
NgoMIV GCCGGC 1 cut(s) 469
NlaIV GGNNCC 1 cut(s) 132
PdiI GCCGGC 1 cut(s) 471
PinAI ACCGGT 1 cut(s) 360
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 341
PspGI CCWGG 1 cut(s) 341
PspN4I GGNNCC 1 cut(s) 132
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 1 cut(s) 440
RsaI GTAC 3 cut(s) 230, 359, 415
RsaNI GTAC 3 cut(s) 229, 358, 414
RseI CAYNNNNRTG 1 cut(s) 392
SaqAI TTAA 2 cut(s) 176, 207
Sau3AI GATC 2 cut(s) 325, 440
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 343
SetI ASST 5 cut(s) 20, 80, 377, 407, 449
SmiMI CAYNNNNRTG 1 cut(s) 392
Sse9I AATT 4 cut(s) 7, 204, 337, 464
SspMI CTAG 3 cut(s) 290, 399, 444
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 134
TaaI ACNGT 1 cut(s) 418
TasI AATT 4 cut(s) 7, 204, 337, 464
Tru1I TTAA 2 cut(s) 176, 207
Tru9I TTAA 2 cut(s) 176, 207
TscAI CASTG 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 42
TspRI CASTG 1 cut(s) 103
XapI RAATTY 1 cut(s) 337
XspI CTAG 3 cut(s) 290, 399, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.