Rh6AG319800

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001505
Physical Location & Seq
Forward (+)
51977353 .. 51977955
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG319800.1

Sequence Viewer

Length: 603 bp
ATGCTAAAGCTCAAATTTTCTCTCTCTTGTTCTTGGCTATTTCGGAGAGAGACAAAGGGAAGCAGCAAAAAATTTCCAATTCCAGTCGGATTCTCAAGCCAACCTTCTCAGAACATCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTGGAGAGGAGGAGAACGGTCACTCCGCGACCTAATTCTTTGGATTTGAAGGCCGGGAATGGAGCTATCAGCGGCGGTGAAATGTCGGCGGCTCAGAAGCTGTTGGTCACTTCGACAAGGAGTTTATCGGTTTCGTTTCAAGGTAAGTCGTACGCGCTCCAGGTGAGTAAAGCGAAGCCACTGCCGTCTCCGACTAAGAGGAAAGGCACCTCGGAGCGAGGGAAGGCTTCGACGCCGGCGAGGCAAGATCAGAGCGAGAATTCCAGACTGATGGAGCAGTACCGGTGGCCGCCGAGGATGAGGCCGGACACTTGTATGACCAGGAGCTTGGATTGTACGGCGGAGATGAAGAAATTGAATGGATCTGGCTCCAATGTGGTTAGGGCATTACAAAATTCACTGGGGAATGATCTTGATGGGAGATTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

200

Amino Acids

22.16

Weight (kDa)

10.66

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 377
AccII CGCG 2 cut(s) 199, 326
AciI CCGC 6 cut(s) 197, 243, 246, 260, 461, 512
AclWI GGATC 1 cut(s) 541
AcoI YGGCCR 1 cut(s) 458
AcsI RAATTY 4 cut(s) 14, 71, 430, 565
AcyI GRCGYC 1 cut(s) 404
AfaI GTAC 3 cut(s) 323, 452, 508
AgeI ACCGGT 1 cut(s) 453
AgsI TTSAA 4 cut(s) 134, 220, 311, 529
AjnI CCWGG 2 cut(s) 330, 491
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 4 cut(s) 10, 236, 271, 498
AluI AGCT 4 cut(s) 10, 236, 271, 498
Alw26I GTCTC 2 cut(s) 44, 363
AlwI GGATC 1 cut(s) 541
AlwNI CAGNNNCTG 1 cut(s) 271
AoxI GGCC 3 cut(s) 222, 458, 473
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 4 cut(s) 14, 71, 430, 565
AsiGI ACCGGT 1 cut(s) 453
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 2 cut(s) 260, 346
BanI GGYRCC 1 cut(s) 377
BbvI GCAGC 1 cut(s) 75
BccI CCATC 2 cut(s) 436, 581
BceAI ACGGC 2 cut(s) 340, 525
BcgI CGANNNNNNTGC 2 cut(s) 334, 368
BciT130I CCWGG 2 cut(s) 332, 493
BcnI CCSGG 1 cut(s) 226
BcoDI GTCTC 2 cut(s) 44, 363
BglI GCCNNNNNGGC 1 cut(s) 412
BisI GCNGC 4 cut(s) 64, 244, 261, 461
BlsI GCNGC 4 cut(s) 65, 245, 262, 462
Bme1390I CCNGG 3 cut(s) 226, 332, 493
BmiI GGNNCC 3 cut(s) 141, 379, 541
BmrFI CCNGG 3 cut(s) 226, 332, 493
BmrI ACTGGG 1 cut(s) 581
BmuI ACTGGG 1 cut(s) 581
BpmI CTGGAG 1 cut(s) 314
BpuEI CTTGAG 1 cut(s) 79
BpuMI CCSGG 1 cut(s) 226
BsaHI GRCGYC 1 cut(s) 404
BsaJI CCNNGG 2 cut(s) 381, 464
BsaWI WCCGGW 1 cut(s) 453
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bse118I RCCGGY 2 cut(s) 406, 453
Bse1I ACTGG 2 cut(s) 83, 576
BseBI CCWGG 2 cut(s) 332, 493
BseDI CCNNGG 2 cut(s) 381, 464
BseGI GGATG 1 cut(s) 474
BseMII CTCAG 2 cut(s) 122, 278
BseNI ACTGG 2 cut(s) 83, 576
BseRI GAGGAG 2 cut(s) 193, 196
BseXI GCAGC 1 cut(s) 75
Bsh1236I CGCG 2 cut(s) 199, 326
BshFI GGCC 3 cut(s) 224, 460, 475
BshNI GGYRCC 1 cut(s) 377
BshTI ACCGGT 1 cut(s) 453
BsiSI CCGG 4 cut(s) 225, 407, 454, 476
BsiWI CGTACG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 44, 363
BsmBI CGTCTC 1 cut(s) 363
BsnI GGCC 3 cut(s) 224, 460, 475
Bsp143I GATC 3 cut(s) 418, 533, 580
BspACI CCGC 6 cut(s) 197, 243, 246, 260, 461, 512
BspANI GGCC 3 cut(s) 224, 460, 475
BspCNI CTCAG 2 cut(s) 121, 277
BspFNI CGCG 2 cut(s) 199, 326
BspLI GGNNCC 3 cut(s) 141, 379, 541
BspPI GGATC 1 cut(s) 541
BspT107I GGYRCC 1 cut(s) 377
BsrFI RCCGGY 2 cut(s) 406, 453
BsrI ACTGG 2 cut(s) 83, 576
BssAI RCCGGY 2 cut(s) 406, 453
BssECI CCNNGG 2 cut(s) 381, 464
BssMI GATC 3 cut(s) 418, 533, 580
BssNI GRCGYC 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 332, 493
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 3 cut(s) 108, 264, 366
BstF5I GGATG 1 cut(s) 474
BstFNI CGCG 2 cut(s) 199, 326
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 3 cut(s) 421, 536, 583
BstMAI GTCTC 2 cut(s) 44, 363
BstMBI GATC 3 cut(s) 418, 533, 580
BstMWI GCNNNNNNNGC 1 cut(s) 412
BstNI CCWGG 2 cut(s) 332, 493
BstSCI CCNGG 3 cut(s) 224, 330, 491
BstUI CGCG 2 cut(s) 199, 326
BstV1I GCAGC 1 cut(s) 75
BstX2I RGATCY 1 cut(s) 533
BstXI CCANNNNNNTGG 2 cut(s) 442, 499
BstYI RGATCY 1 cut(s) 533
BsuRI GGCC 3 cut(s) 224, 460, 475
BtsCI GGATG 1 cut(s) 474
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 2 cut(s) 350, 569
Cac8I GCNNGC 1 cut(s) 408
CaiI CAGNNNCTG 1 cut(s) 271
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 2 cut(s) 406, 453
CseI GACGC 1 cut(s) 412
Csp6I GTAC 3 cut(s) 322, 451, 507
CspAI ACCGGT 1 cut(s) 453
CviQI GTAC 3 cut(s) 322, 451, 507
DdeI CTNAG 3 cut(s) 108, 264, 366
DpnI GATC 3 cut(s) 420, 535, 582
DpnII GATC 3 cut(s) 418, 533, 580
EaeI YGGCCR 1 cut(s) 458
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EciI GGCGGA 1 cut(s) 527
EcoRI GAATTC 1 cut(s) 430
EcoRII CCWGG 2 cut(s) 330, 491
Esp3I CGTCTC 1 cut(s) 363
FaiI YATR 1 cut(s) 488
FalI AAGNNNNNCTT 2 cut(s) 88, 120
Fnu4HI GCNGC 4 cut(s) 64, 244, 261, 461
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 64, 244, 261, 461
GlaI GCGC 1 cut(s) 327
GluI GCNGC 4 cut(s) 64, 244, 261, 461
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 3 cut(s) 224, 460, 475
HapII CCGG 4 cut(s) 225, 407, 454, 476
HgaI GACGC 1 cut(s) 412
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 404
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 1 cut(s) 90
HpaII CCGG 4 cut(s) 225, 407, 454, 476
HphI GGTGA 2 cut(s) 260, 346
Hpy188I TCNGA 7 cut(s) 45, 89, 111, 267, 363, 385, 423
Hpy188III TCNNGA 2 cut(s) 435, 584
Hpy99I CGWCG 1 cut(s) 406
HpyAV CCTTC 4 cut(s) 114, 163, 214, 388
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 412
HpyF3I CTNAG 3 cut(s) 108, 264, 366
Hsp92I GRCGYC 1 cut(s) 404
HspAI GCGC 1 cut(s) 326
KroI GCCGGC 1 cut(s) 406
KroNI GCCGGC 1 cut(s) 408
Kzo9I GATC 3 cut(s) 418, 533, 580
LmnI GCTCC 6 cut(s) 233, 333, 385, 445, 495, 545
Lsp1109I GCAGC 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 190, 277
MalI GATC 3 cut(s) 420, 535, 582
MboI GATC 3 cut(s) 418, 533, 580
MboII GAAGA 2 cut(s) 146, 532
MflI RGATCY 1 cut(s) 533
MluCI AATT 7 cut(s) 14, 71, 78, 205, 430, 524, 565
MmeI TCCRAC 2 cut(s) 67, 386
MnlI CCTC 9 cut(s) 130, 171, 174, 363, 383, 391, 405, 459, 465
MreI CGCCGGCG 1 cut(s) 406
MroNI GCCGGC 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 243
MspI CCGG 4 cut(s) 225, 407, 454, 476
MspR9I CCNGG 3 cut(s) 226, 332, 493
MvaI CCWGG 2 cut(s) 332, 493
MvnI CGCG 2 cut(s) 199, 326
MwoI GCNNNNNNNGC 1 cut(s) 412
NaeI GCCGGC 1 cut(s) 408
NciI CCSGG 1 cut(s) 226
NdeII GATC 3 cut(s) 418, 533, 580
NgoMIV GCCGGC 1 cut(s) 406
NlaIV GGNNCC 3 cut(s) 141, 379, 541
NmeAIII GCCGAG 1 cut(s) 489
NmuCI GTSAC 2 cut(s) 190, 277
PcsI WCGNNNNNNNCGW 1 cut(s) 407
PdiI GCCGGC 1 cut(s) 408
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 90
Pfl23II CGTACG 1 cut(s) 321
PinAI ACCGGT 1 cut(s) 453
PkrI GCNGC 4 cut(s) 65, 245, 262, 462
Psp6I CCWGG 2 cut(s) 330, 491
PspGI CCWGG 2 cut(s) 330, 491
PspLI CGTACG 1 cut(s) 321
PspN4I GGNNCC 3 cut(s) 141, 379, 541
PstNI CAGNNNCTG 1 cut(s) 271
PsuI RGATCY 1 cut(s) 533
RsaI GTAC 3 cut(s) 323, 452, 508
RsaNI GTAC 3 cut(s) 322, 451, 507
RseI CAYNNNNRTG 1 cut(s) 485
SatI GCNGC 4 cut(s) 64, 244, 261, 461
Sau3AI GATC 3 cut(s) 418, 533, 580
ScrFI CCNGG 3 cut(s) 226, 332, 493
SgrAI CRCCGGYG 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 7 cut(s) 14, 71, 78, 205, 430, 524, 565
SsiI CCGC 6 cut(s) 197, 243, 246, 260, 461, 512
StyD4I CCNGG 3 cut(s) 224, 330, 491
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 3 cut(s) 124, 284, 401
TasI AATT 7 cut(s) 14, 71, 78, 205, 430, 524, 565
TauI GCSGC 3 cut(s) 246, 263, 463
TfiI GAWTC 1 cut(s) 90
TscAI CASTG 2 cut(s) 357, 576
TseFI GTSAC 2 cut(s) 190, 277
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 2 cut(s) 190, 277
TspDTI ATGAA 1 cut(s) 533
TspRI CASTG 2 cut(s) 357, 576
XapI RAATTY 4 cut(s) 14, 71, 430, 565
XmnI GAANNNNTTC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.