Rh7BG227100

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0001505
Physical Location & Seq
Forward (+)
19603345 .. 19606900
3556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG227100.1

Sequence Viewer

Length: 357 bp
ATGTGGTCGCTGAGGGCTCAGAAGCTGTTGGTCACTTCGACGAGGAGTTTATCGGTTTCGTTTCATGGCGAGTCGTACGCGCTCCAGGTGAGTAAAGCGAAGCGACCGCCGTCTCCGATTGCGAGGAAAGGGACGCCGGAGCGAAGGAAGGCTTCGACGCAGGCGAGGCCGGATCAGAGCGAGAATTCCAGACTGATGGAGCAGTACCGGTGGCCGCCGAGGTTGAGGCCGGACACTTGTATGACCAGGAGCTTGGATTGTACGGTGGAGATGAAGAAATTGAATGGATCTGGCTCCAATGTGGTTAGGGCATTGCAAAATTCACTGGGGAATGATCTTGATGGGAGATTGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

118

Amino Acids

13.27

Weight (kDa)

10.67

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 2 cut(s) 107, 215
AclWI GGATC 2 cut(s) 180, 295
AcoI YGGCCR 1 cut(s) 212
AcsI RAATTY 2 cut(s) 184, 319
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 3 cut(s) 77, 206, 262
AgeI ACCGGT 1 cut(s) 207
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 2 cut(s) 84, 245
AluBI AGCT 3 cut(s) 25, 252, 354
AluI AGCT 3 cut(s) 25, 252, 354
Alw26I GTCTC 1 cut(s) 117
AlwI GGATC 2 cut(s) 180, 295
AlwNI CAGNNNCTG 1 cut(s) 25
AoxI GGCC 3 cut(s) 167, 212, 227
ApoI RAATTY 2 cut(s) 184, 319
AsiGI ACCGGT 1 cut(s) 207
AspLEI GCGC 1 cut(s) 82
AsuHPI GGTGA 1 cut(s) 100
BanII GRGCYC 1 cut(s) 19
BbvCI CCTCAGC 1 cut(s) 11
BccI CCATC 2 cut(s) 190, 335
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 2 cut(s) 86, 247
BcoDI GTCTC 1 cut(s) 117
BisI GCNGC 1 cut(s) 215
BlsI GCNGC 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 86, 247
BmiI GGNNCC 1 cut(s) 295
BmrFI CCNGG 2 cut(s) 86, 247
BmrI ACTGGG 1 cut(s) 335
BmuI ACTGGG 1 cut(s) 335
BoxI GACNNNNGTC 1 cut(s) 109
BpmI CTGGAG 1 cut(s) 68
Bpu10I CCTNAGC 1 cut(s) 11
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 1 cut(s) 218
BsaWI WCCGGW 1 cut(s) 207
Bse118I RCCGGY 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 330
Bse3DI GCAATG 1 cut(s) 311
BseBI CCWGG 2 cut(s) 86, 247
BseDI CCNNGG 1 cut(s) 218
BseMI GCAATG 1 cut(s) 311
BseMII CTCAG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 330
BseRI GAGGAG 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 3 cut(s) 169, 214, 229
BshTI ACCGGT 1 cut(s) 207
BsiEI CGRYCG 1 cut(s) 107
BsiSI CCGG 4 cut(s) 137, 170, 208, 230
BsiWI CGTACG 1 cut(s) 75
BslFI GGGAC 1 cut(s) 145
BsmAI GTCTC 1 cut(s) 117
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 145
BsnI GGCC 3 cut(s) 169, 214, 229
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 3 cut(s) 172, 287, 334
BspACI CCGC 2 cut(s) 107, 215
BspANI GGCC 3 cut(s) 169, 214, 229
BspCNI CTCAG 1 cut(s) 31
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 295
BspPI GGATC 2 cut(s) 180, 295
BsrDI GCAATG 1 cut(s) 311
BsrFI RCCGGY 1 cut(s) 207
BsrI ACTGG 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 207
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 3 cut(s) 172, 287, 334
BssNI GRCGYC 1 cut(s) 134
Bst2UI CCWGG 2 cut(s) 86, 247
Bst4CI ACNGT 1 cut(s) 265
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 2 cut(s) 11, 18
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 3 cut(s) 175, 290, 337
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 3 cut(s) 172, 287, 334
BstMCI CGRYCG 1 cut(s) 107
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNI CCWGG 2 cut(s) 86, 247
BstPAI GACNNNNGTC 1 cut(s) 109
BstSCI CCNGG 2 cut(s) 84, 245
BstUI CGCG 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 287
BstXI CCANNNNNNTGG 2 cut(s) 196, 253
BstYI RGATCY 1 cut(s) 287
BsuRI GGCC 3 cut(s) 169, 214, 229
BtsIMutI CAGTG 1 cut(s) 323
Cac8I GCNNGC 1 cut(s) 162
CaiI CAGNNNCTG 1 cut(s) 25
CfoI GCGC 1 cut(s) 82
Cfr10I RCCGGY 1 cut(s) 207
CseI GACGC 2 cut(s) 142, 166
Csp6I GTAC 3 cut(s) 76, 205, 261
CspAI ACCGGT 1 cut(s) 207
CviAII CATG 1 cut(s) 65
CviJI RGCY 9 cut(s) 17, 25, 152, 169, 214, 229, 252, 294, 354
CviKI_1 RGCY 9 cut(s) 17, 25, 152, 169, 214, 229, 252, 294, 354
CviQI GTAC 3 cut(s) 76, 205, 261
DdeI CTNAG 2 cut(s) 11, 18
DpnI GATC 3 cut(s) 174, 289, 336
DpnII GATC 3 cut(s) 172, 287, 334
EaeI YGGCCR 1 cut(s) 212
Eco24I GRGCYC 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 2 cut(s) 84, 245
EcoT38I GRGCYC 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 1 cut(s) 68
FaiI YATR 2 cut(s) 66, 242
FalI AAGNNNNNCTT 2 cut(s) 136, 168
FaqI GGGAC 1 cut(s) 145
FatI CATG 1 cut(s) 64
Fnu4HI GCNGC 1 cut(s) 215
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 215
GlaI GCGC 1 cut(s) 81
GluI GCNGC 1 cut(s) 215
GsuI CTGGAG 1 cut(s) 68
HaeIII GGCC 3 cut(s) 169, 214, 229
HapII CCGG 4 cut(s) 137, 170, 208, 230
HgaI GACGC 2 cut(s) 142, 166
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 1 cut(s) 68
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 71
HpaII CCGG 4 cut(s) 137, 170, 208, 230
HphI GGTGA 1 cut(s) 100
Hpy188I TCNGA 3 cut(s) 21, 117, 177
Hpy188III TCNNGA 2 cut(s) 189, 338
Hpy99I CGWCG 2 cut(s) 43, 160
HpyAV CCTTC 2 cut(s) 138, 142
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 2 cut(s) 11, 18
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 68
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 3 cut(s) 172, 287, 334
LmnI GCTCC 5 cut(s) 87, 139, 199, 249, 299
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 174, 289, 336
MboI GATC 3 cut(s) 172, 287, 334
MboII GAAGA 1 cut(s) 286
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 19
MluCI AATT 3 cut(s) 184, 278, 319
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 6 cut(s) 6, 36, 117, 159, 213, 219
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 4 cut(s) 137, 170, 208, 230
MspR9I CCNGG 2 cut(s) 86, 247
MvaI CCWGG 2 cut(s) 86, 247
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 3 cut(s) 172, 287, 334
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 295
NmeAIII GCCGAG 1 cut(s) 243
NmuCI GTSAC 1 cut(s) 31
PcsI WCGNNNNNNNCGW 1 cut(s) 161
Pfl23II CGTACG 1 cut(s) 75
PinAI ACCGGT 1 cut(s) 207
PkrI GCNGC 1 cut(s) 216
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
PshAI GACNNNNGTC 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 84, 245
PspGI CCWGG 2 cut(s) 84, 245
PspLI CGTACG 1 cut(s) 75
PspN4I GGNNCC 1 cut(s) 295
PstNI CAGNNNCTG 1 cut(s) 25
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 3 cut(s) 77, 206, 262
RsaNI GTAC 3 cut(s) 76, 205, 261
RseI CAYNNNNRTG 1 cut(s) 239
SatI GCNGC 1 cut(s) 215
Sau3AI GATC 3 cut(s) 172, 287, 334
SchI GAGTC 1 cut(s) 80
ScrFI CCNGG 2 cut(s) 86, 247
SduI GDGCHC 1 cut(s) 19
SetI ASST 5 cut(s) 27, 90, 224, 254, 356
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 3 cut(s) 184, 278, 319
SsiI CCGC 2 cut(s) 107, 215
StyD4I CCNGG 2 cut(s) 84, 245
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 38, 155
TasI AATT 3 cut(s) 184, 278, 319
TauI GCSGC 1 cut(s) 217
TscAI CASTG 1 cut(s) 330
TseFI GTSAC 1 cut(s) 31
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 2 cut(s) 53, 287
TspRI CASTG 1 cut(s) 330
XapI RAATTY 2 cut(s) 184, 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.