Rw6G042210

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001505
Physical Location & Seq
Forward (+)
65730433 .. 65736466
6034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G042210.1

Sequence Viewer

Length: 975 bp
ATGGTAGCTGCTGTTTCGACGACATTGAACCCCAAAGCCGCCGCCTCCGGTCGTCCTCAGAACGGTACCAGGCCTCCGCTACTACCCTCCGACCCCGAAAATGGTGTCGTTCCTCGCCGCCTCAAGTCTCGAGAAGTCACGTCCCGCTACATGTCGTCTTCTTCCTCCGCCTCCGCGGCTTCGTCTACTTGTGCCAATTCGAAACGGTGCCCCTCGCCCGCGGTCTCAAGGACCGGGGCGGCGAGTCCGATGCCGACGCCGCAGACGCTGAGGCGGTCGCAGTCGGTGGAGAGGAGGAGACCGGTCACTCCGAGACCTAATTCTTTGGATTTGAGGACCGGGAGTGGAGCTGCCAGCGGCGGTGAAATGTCGGCGGCTCAGAAGCTGCTGGTCACTTCGACGAGGAGTCTATCGGTTTCGTTTCAGGGCGAGTCGTACTCGCTCCAGGTGAGTAAAGCTAAGCGAGCGCCGTCTCCGACTGCGAGGAAAGGCACGCCGGAGCGGAGGAAGGCTTCGACGCCGGCGAGGCCGGATCAGAGTGAGAATTCGAGGCCGATGGAGCAGTACCGGTGGCCGGCGAGGTTGAGGCCGGACACTTGTATGACCAGGAGCTTGGATTGTACGGTGGAGAGGAAGAAAGTGAATGGATCTGGTTCCAATGTGGTTAGGGCATTGCAAAATTCGCTGGGGAATGATCTTGATGGGAGACTGAGGTCTAGTTCATGCAATTTGGGTTCTGTAAAAGCTACTGAGCCTGTTGATGAAGCTAGAGTTACACAGTCTGAAGCTGTGGCTTCCTCTGATACTGATAGTGTGTCTTCTGGTAGTTCCAATTCGGGGCCTCACGAGCTCGGTGGAGGTGGCACTAATTGCTCTGCTGCTGTTGGGCAAGCGCCACGTCCTAGAGGGATAGTGGTTCAGGCGAGGTTTTGGCAAGAGACTAACAATCTCTTTGCGCAGACAGTCCGAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

324

Amino Acids

34.22

Weight (kDa)

10.91

Isoelectric Point (pI)

66.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 957
Acc65I GGTACC 1 cut(s) 65
AccB1I GGYRCC 2 cut(s) 65, 207
AccBSI CCGCTC 1 cut(s) 502
AccI GTMKAC 1 cut(s) 185
AccII CGCG 2 cut(s) 176, 221
AclWI GGATC 2 cut(s) 540, 655
AcoI YGGCCR 1 cut(s) 572
AcsI RAATTY 2 cut(s) 544, 679
AcuI CTGAAG 1 cut(s) 804
AcyI GRCGYC 2 cut(s) 257, 518
AfaI GTAC 4 cut(s) 67, 437, 566, 622
AfiI CCNNNNNNNGG 4 cut(s) 62, 101, 574, 837
AflIII ACRYGT 1 cut(s) 150
AgeI ACCGGT 2 cut(s) 301, 567
AgsI TTSAA 1 cut(s) 28
AhdI GACNNNNNGTC 1 cut(s) 405
AjiI CACGTC 2 cut(s) 141, 899
AjnI CCWGG 3 cut(s) 68, 444, 605
AluBI AGCT 9 cut(s) 8, 350, 385, 458, 612, 746, 767, 788, 850
AluI AGCT 9 cut(s) 8, 350, 385, 458, 612, 746, 767, 788, 850
Alw21I GWGCWC 1 cut(s) 852
Alw26I GTCTC 7 cut(s) 132, 229, 292, 307, 477, 700, 932
AlwI GGATC 2 cut(s) 540, 655
AlwNI CAGNNNCTG 2 cut(s) 268, 385
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 6 cut(s) 71, 527, 551, 572, 587, 839
ApeKI GCWGC 4 cut(s) 8, 350, 385, 878
ApoI RAATTY 2 cut(s) 544, 679
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AsiGI ACCGGT 2 cut(s) 301, 567
Asp718I GGTACC 1 cut(s) 65
AspLEI GCGC 3 cut(s) 469, 895, 958
AspS9I GGNCC 3 cut(s) 231, 336, 839
AsuC2I CCSGG 2 cut(s) 235, 340
AsuHPI GGTGA 2 cut(s) 374, 460
AsuII TTCGAA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 2 cut(s) 231, 336
BaeGI GKGCMC 1 cut(s) 212
BanI GGYRCC 2 cut(s) 65, 207
BanII GRGCYC 1 cut(s) 852
BauI CACGAG 1 cut(s) 845
BbsI GAAGAC 2 cut(s) 150, 810
Bbv12I GWGCWC 1 cut(s) 852
BbvCI CCTCAGC 1 cut(s) 269
BbvI GCAGC 3 cut(s) 337, 372, 865
BccI CCATC 2 cut(s) 550, 695
BceAI ACGGC 1 cut(s) 454
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BciT130I CCWGG 3 cut(s) 70, 446, 607
BcnI CCSGG 2 cut(s) 235, 340
BcoDI GTCTC 7 cut(s) 132, 229, 292, 307, 477, 700, 932
BfaI CTAG 3 cut(s) 717, 768, 903
BfoI RGCGCY 2 cut(s) 470, 896
BglI GCCNNNNNGGC 2 cut(s) 176, 526
BlpI GCTNAGC 1 cut(s) 459
Bme1390I CCNGG 5 cut(s) 70, 235, 340, 446, 607
Bme18I GGWCC 2 cut(s) 231, 336
BmeRI GACNNNNNGTC 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 129
BmgBI CACGTC 2 cut(s) 141, 899
BmgT120I GGNCC 3 cut(s) 231, 336, 839
BmiI GGNNCC 4 cut(s) 67, 209, 655, 840
BmrFI CCNGG 5 cut(s) 70, 235, 340, 446, 607
BmsI GCATC 1 cut(s) 240
BoxI GACNNNNGTC 1 cut(s) 712
BpiI GAAGAC 2 cut(s) 150, 810
BplI GAGNNNNNCTC 2 cut(s) 422, 454
BpmI CTGGAG 1 cut(s) 428
Bpu10I CCTNAGC 1 cut(s) 269
Bpu1102I GCTNAGC 1 cut(s) 459
Bpu14I TTCGAA 1 cut(s) 200
BpuEI CTTGAG 2 cut(s) 107, 211
BpuMI CCSGG 2 cut(s) 235, 340
BsaHI GRCGYC 2 cut(s) 257, 518
BsaI GGTCTC 3 cut(s) 229, 292, 307
BsaJI CCNNGG 3 cut(s) 174, 219, 234
BsaWI WCCGGW 3 cut(s) 47, 301, 567
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 101, 574, 837
Bse118I RCCGGY 4 cut(s) 301, 520, 567, 574
Bse3DI GCAATG 1 cut(s) 671
BseBI CCWGG 3 cut(s) 70, 446, 607
BseDI CCNNGG 3 cut(s) 174, 219, 234
BseLI CCNNNNNNNGG 4 cut(s) 62, 101, 574, 837
BseMI GCAATG 1 cut(s) 671
BseMII CTCAG 5 cut(s) 71, 260, 392, 701, 741
BseRI GAGGAG 3 cut(s) 307, 310, 418
BseSI GKGCMC 1 cut(s) 212
BseXI GCAGC 3 cut(s) 337, 372, 865
BseYI CCCAGC 1 cut(s) 685
Bsh1236I CGCG 2 cut(s) 176, 221
Bsh1285I CGRYCG 2 cut(s) 52, 278
BshFI GGCC 6 cut(s) 73, 529, 553, 574, 589, 841
BshNI GGYRCC 2 cut(s) 65, 207
BshTI ACCGGT 2 cut(s) 301, 567
BsiEI CGRYCG 2 cut(s) 52, 278
BsiHKAI GWGCWC 1 cut(s) 852
BsiHKCI CYCGRG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 127
BslI CCNNNNNNNGG 4 cut(s) 62, 101, 574, 837
BsmAI GTCTC 7 cut(s) 132, 229, 292, 307, 477, 700, 932
BsmBI CGTCTC 1 cut(s) 477
BsmFI GGGAC 1 cut(s) 127
BsnI GGCC 6 cut(s) 73, 529, 553, 574, 589, 841
Bso31I GGTCTC 3 cut(s) 229, 292, 307
BsoBI CYCGRG 1 cut(s) 129
Bsp119I TTCGAA 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 212, 852
Bsp143I GATC 3 cut(s) 532, 647, 694
Bsp1720I GCTNAGC 1 cut(s) 459
BspANI GGCC 6 cut(s) 73, 529, 553, 574, 589, 841
BspCNI CTCAG 5 cut(s) 70, 261, 391, 702, 742
BspFNI CGCG 2 cut(s) 176, 221
BspLI GGNNCC 4 cut(s) 67, 209, 655, 840
BspPI GGATC 2 cut(s) 540, 655
BspT104I TTCGAA 1 cut(s) 200
BspT107I GGYRCC 2 cut(s) 65, 207
BspTNI GGTCTC 3 cut(s) 229, 292, 307
BsrBI CCGCTC 1 cut(s) 502
BsrDI GCAATG 1 cut(s) 671
BsrFI RCCGGY 4 cut(s) 301, 520, 567, 574
BssAI RCCGGY 4 cut(s) 301, 520, 567, 574
BssECI CCNNGG 3 cut(s) 174, 219, 234
BssMI GATC 3 cut(s) 532, 647, 694
BssNI GRCGYC 2 cut(s) 257, 518
BssSI CACGAG 1 cut(s) 845
Bst2BI CACGAG 1 cut(s) 845
Bst2UI CCWGG 3 cut(s) 70, 446, 607
Bst4CI ACNGT 5 cut(s) 65, 207, 625, 780, 964
BstACI GRCGYC 2 cut(s) 257, 518
BstAPI GCANNNNNTGC 1 cut(s) 870
BstBI TTCGAA 1 cut(s) 200
BstC8I GCNNGC 7 cut(s) 219, 355, 465, 494, 522, 576, 891
BstDEI CTNAG 6 cut(s) 57, 269, 378, 459, 710, 750
BstDSI CCRYGG 2 cut(s) 174, 219
BstFNI CGCG 2 cut(s) 176, 221
BstH2I RGCGCY 2 cut(s) 470, 896
BstHHI GCGC 3 cut(s) 469, 895, 958
BstKTI GATC 3 cut(s) 535, 650, 697
BstMAI GTCTC 7 cut(s) 132, 229, 292, 307, 477, 700, 932
BstMBI GATC 3 cut(s) 532, 647, 694
BstMCI CGRYCG 2 cut(s) 52, 278
BstMWI GCNNNNNNNGC 9 cut(s) 176, 259, 265, 464, 526, 559, 682, 847, 870
BstNI CCWGG 3 cut(s) 70, 446, 607
BstNSI RCATGY 1 cut(s) 154
BstPAI GACNNNNGTC 1 cut(s) 712
BstSCI CCNGG 5 cut(s) 68, 233, 338, 444, 605
BstSLI GKGCMC 1 cut(s) 212
BstUI CGCG 2 cut(s) 176, 221
BstV1I GCAGC 3 cut(s) 337, 372, 865
BstV2I GAAGAC 2 cut(s) 150, 810
BstX2I RGATCY 1 cut(s) 647
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 1 cut(s) 647
BsuRI GGCC 6 cut(s) 73, 529, 553, 574, 589, 841
BtgI CCRYGG 2 cut(s) 174, 219
BtrI CACGTC 2 cut(s) 141, 899
Cac8I GCNNGC 7 cut(s) 219, 355, 465, 494, 522, 576, 891
CaiI CAGNNNCTG 2 cut(s) 268, 385
CfoI GCGC 3 cut(s) 469, 895, 958
Cfr10I RCCGGY 4 cut(s) 301, 520, 567, 574
Cfr13I GGNCC 3 cut(s) 231, 336, 839
Cfr42I CCGCGG 2 cut(s) 177, 222
CseI GACGC 3 cut(s) 265, 274, 526
Csp6I GTAC 4 cut(s) 66, 436, 565, 621
CspAI ACCGGT 2 cut(s) 301, 567
CviAII CATG 2 cut(s) 151, 723
CviQI GTAC 4 cut(s) 66, 436, 565, 621
DdeI CTNAG 6 cut(s) 57, 269, 378, 459, 710, 750
DpnI GATC 3 cut(s) 534, 649, 696
DpnII GATC 3 cut(s) 532, 647, 694
DriI GACNNNNNGTC 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 572
Eam1105I GACNNNNNGTC 1 cut(s) 405
EciI GGCGGA 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 850
Eco147I AGGCCT 1 cut(s) 73
Eco24I GRGCYC 1 cut(s) 852
Eco31I GGTCTC 3 cut(s) 229, 292, 307
Eco47I GGWCC 2 cut(s) 231, 336
Eco53kI GAGCTC 1 cut(s) 850
Eco57I CTGAAG 1 cut(s) 804
Eco88I CYCGRG 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 850
EcoO109I RGGNCCY 1 cut(s) 839
EcoRI GAATTC 1 cut(s) 544
EcoRII CCWGG 3 cut(s) 68, 444, 605
EcoT38I GRGCYC 1 cut(s) 852
Esp3I CGTCTC 1 cut(s) 477
FaeI CATG 2 cut(s) 154, 726
FaiI YATR 4 cut(s) 152, 602, 724, 973
FaqI GGGAC 1 cut(s) 127
FatI CATG 2 cut(s) 150, 722
FauI CCCGC 2 cut(s) 152, 226
FblI GTMKAC 1 cut(s) 185
FriOI GRGCYC 1 cut(s) 852
FspBI CTAG 3 cut(s) 717, 768, 903
FspI TGCGCA 1 cut(s) 957
GlaI GCGC 3 cut(s) 468, 894, 957
GsaI CCCAGC 1 cut(s) 689
GsuI CTGGAG 1 cut(s) 428
HaeII RGCGCY 2 cut(s) 470, 896
HaeIII GGCC 6 cut(s) 73, 529, 553, 574, 589, 841
HgaI GACGC 3 cut(s) 265, 274, 526
HhaI GCGC 3 cut(s) 469, 895, 958
Hin1I GRCGYC 2 cut(s) 257, 518
Hin1II CATG 2 cut(s) 154, 726
Hin6I GCGC 3 cut(s) 467, 893, 956
HinP1I GCGC 3 cut(s) 467, 893, 956
HinfI GANTC 3 cut(s) 244, 406, 431
HphI GGTGA 2 cut(s) 374, 460
Hpy166II GTNNAC 1 cut(s) 186
Hpy188III TCNNGA 4 cut(s) 129, 131, 698, 845
Hpy8I GTNNAC 1 cut(s) 186
Hpy99I CGWCG 4 cut(s) 22, 259, 403, 520
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 5 cut(s) 65, 207, 625, 780, 964
HpyCH4IV ACGT 2 cut(s) 140, 898
HpyCH4V TGCA 2 cut(s) 676, 726
HpyF10VI GCNNNNNNNGC 9 cut(s) 176, 259, 265, 464, 526, 559, 682, 847, 870
HpyF3I CTNAG 6 cut(s) 57, 269, 378, 459, 710, 750
HpySE526I ACGT 2 cut(s) 140, 898
Hsp92I GRCGYC 2 cut(s) 257, 518
Hsp92II CATG 2 cut(s) 154, 726
HspAI GCGC 3 cut(s) 467, 893, 956
KpnI GGTACC 1 cut(s) 69
KroI GCCGGC 2 cut(s) 520, 574
KroNI GCCGGC 2 cut(s) 522, 576
KspI CCGCGG 2 cut(s) 177, 222
Kzo9I GATC 3 cut(s) 532, 647, 694
LmnI GCTCC 5 cut(s) 347, 447, 499, 559, 609
Lsp1109I GCAGC 3 cut(s) 337, 372, 865
LweI GCATC 1 cut(s) 240
MaeI CTAG 3 cut(s) 717, 768, 903
MaeII ACGT 2 cut(s) 140, 898
MaeIII GTNAC 4 cut(s) 136, 304, 391, 772
MalI GATC 3 cut(s) 534, 649, 696
MbiI CCGCTC 1 cut(s) 502
MboI GATC 3 cut(s) 532, 647, 694
MboII GAAGA 4 cut(s) 150, 153, 646, 810
MflI RGATCY 1 cut(s) 647
MhlI GDGCHC 2 cut(s) 212, 852
MluCI AATT 7 cut(s) 196, 319, 544, 679, 727, 832, 868
MlyI GAGTC 3 cut(s) 253, 415, 440
MmeI TCCRAC 2 cut(s) 114, 500
MreI CGCCGGCG 1 cut(s) 520
MroNI GCCGGC 2 cut(s) 520, 574
MslI CAYNNNNRTG 1 cut(s) 599
MspA1I CMGCKG 3 cut(s) 176, 221, 357
MspR9I CCNGG 5 cut(s) 70, 235, 340, 446, 607
MvaI CCWGG 3 cut(s) 70, 446, 607
MvnI CGCG 2 cut(s) 176, 221
MwoI GCNNNNNNNGC 9 cut(s) 176, 259, 265, 464, 526, 559, 682, 847, 870
NaeI GCCGGC 2 cut(s) 522, 576
NciI CCSGG 2 cut(s) 235, 340
NdeII GATC 3 cut(s) 532, 647, 694
NgoMIV GCCGGC 2 cut(s) 520, 574
NlaIII CATG 2 cut(s) 154, 726
NlaIV GGNNCC 4 cut(s) 67, 209, 655, 840
NmuCI GTSAC 3 cut(s) 136, 304, 391
NsbI TGCGCA 1 cut(s) 957
NspI RCATGY 1 cut(s) 154
NspV TTCGAA 1 cut(s) 200
PaeR7I CTCGAG 1 cut(s) 129
PceI AGGCCT 1 cut(s) 73
PciI ACATGT 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 521
PdiI GCCGGC 2 cut(s) 522, 576
PinAI ACCGGT 2 cut(s) 301, 567
PleI GAGTC 3 cut(s) 252, 414, 439
PpsI GAGTC 3 cut(s) 252, 414, 439
PscI ACATGT 1 cut(s) 150
PshAI GACNNNNGTC 1 cut(s) 712
Psp124BI GAGCTC 1 cut(s) 852
Psp6I CCWGG 3 cut(s) 68, 444, 605
PspFI CCCAGC 1 cut(s) 685
PspGI CCWGG 3 cut(s) 68, 444, 605
PspN4I GGNNCC 4 cut(s) 67, 209, 655, 840
PspPI GGNCC 3 cut(s) 231, 336, 839
PstNI CAGNNNCTG 2 cut(s) 268, 385
PsuI RGATCY 1 cut(s) 647
RsaI GTAC 4 cut(s) 67, 437, 566, 622
RsaNI GTAC 4 cut(s) 66, 436, 565, 621
RseI CAYNNNNRTG 1 cut(s) 599
SacI GAGCTC 1 cut(s) 852
SacII CCGCGG 2 cut(s) 177, 222
Sau3AI GATC 3 cut(s) 532, 647, 694
Sau96I GGNCC 3 cut(s) 231, 336, 839
SchI GAGTC 3 cut(s) 253, 415, 440
ScrFI CCNGG 5 cut(s) 70, 235, 340, 446, 607
SduI GDGCHC 2 cut(s) 212, 852
SfaNI GCATC 1 cut(s) 240
Sfr274I CTCGAG 1 cut(s) 129
Sfr303I CCGCGG 2 cut(s) 177, 222
SfuI TTCGAA 1 cut(s) 200
SgrAI CRCCGGYG 1 cut(s) 520
SgrBI CCGCGG 2 cut(s) 177, 222
SinI GGWCC 2 cut(s) 231, 336
SlaI CTCGAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 599
SmlI CTYRAG 3 cut(s) 122, 129, 226
SmoI CTYRAG 3 cut(s) 122, 129, 226
Sse9I AATT 7 cut(s) 196, 319, 544, 679, 727, 832, 868
SseBI AGGCCT 1 cut(s) 73
SspMI CTAG 3 cut(s) 717, 768, 903
SstI GAGCTC 1 cut(s) 852
StuI AGGCCT 1 cut(s) 73
StyD4I CCNGG 5 cut(s) 68, 233, 338, 444, 605
TaaI ACNGT 5 cut(s) 65, 207, 625, 780, 964
TaiI ACGT 2 cut(s) 143, 901
TaqI TCGA 6 cut(s) 17, 130, 200, 398, 515, 548
TasI AATT 7 cut(s) 196, 319, 544, 679, 727, 832, 868
TauI GCSGC 8 cut(s) 41, 44, 120, 179, 242, 262, 360, 377
TseFI GTSAC 3 cut(s) 136, 304, 391
TseI GCWGC 4 cut(s) 8, 350, 385, 878
Tsp45I GTSAC 3 cut(s) 136, 304, 391
TspDTI ATGAA 2 cut(s) 711, 777
VpaK11BI GGWCC 2 cut(s) 231, 336
XapI RAATTY 2 cut(s) 544, 679
XceI RCATGY 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 185
XspI CTAG 3 cut(s) 717, 768, 903
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.