RchiOBHm_Chr2g0102601

QWRF motif-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001505
Physical Location & Seq
Forward (+)
14103821 .. 14105789
1969 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47701

Sequence Viewer

Length: 333 bp
ATGCTAAAGCTCAAATTTTCTCTCTCTTGTTCTTGGCTATTTCAGAGAGAGACAAAGGGAAGGAGCAAAAAATTTCCAATTCCAGTCGAATTCTCAAGCCAGCCTTCTCAGAACATCAAGGCTCGATTGCTTGAAGAGGTTCCCAAGTTGCAGAGATTGGCTGTAAAGAAGGTGGAGAGGAGGAGAACGGTCACTCCTCGACCTAATTCTTTGGATTTGAGGGCCGGCAATGGAGCTGCTGGCGGCGGTGAAATGTCGGCGTCTCAGAAGCTGTTGGTCACTTCGACGAGGAGTTTATCAGTTTCGTTTCAGGGCGAGTCGTACGCGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
QWRF

Protein Analysis

110

Amino Acids

12.24

Weight (kDa)

10.78

Isoelectric Point (pI)

58.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 326
AciI CCGC 2 cut(s) 243, 246
AcsI RAATTY 3 cut(s) 14, 71, 89
AcyI GRCGYC 1 cut(s) 260
AfaI GTAC 1 cut(s) 323
AgsI TTSAA 1 cut(s) 134
AloI GAACNNNNNNTCC 2 cut(s) 178, 210
AluBI AGCT 3 cut(s) 10, 236, 271
AluI AGCT 3 cut(s) 10, 236, 271
Alw26I GTCTC 2 cut(s) 44, 267
AlwNI CAGNNNCTG 1 cut(s) 271
AoxI GGCC 1 cut(s) 222
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 3 cut(s) 14, 71, 89
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 328
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 260
BbvI GCAGC 1 cut(s) 223
BcoDI GTCTC 2 cut(s) 44, 267
BfaI CTAG 1 cut(s) 331
BisI GCNGC 2 cut(s) 237, 244
BlsI GCNGC 2 cut(s) 238, 245
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 79
BsaHI GRCGYC 1 cut(s) 260
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bse118I RCCGGY 1 cut(s) 224
Bse1I ACTGG 1 cut(s) 83
Bse3DI GCAATG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 235
BseMII CTCAG 2 cut(s) 122, 278
BseNI ACTGG 1 cut(s) 83
BseRI GAGGAG 4 cut(s) 186, 193, 196, 304
BseXI GCAGC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 326
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 1 cut(s) 225
BsiWI CGTACG 1 cut(s) 321
BsmAI GTCTC 2 cut(s) 44, 267
BsmBI CGTCTC 1 cut(s) 267
BsnI GGCC 1 cut(s) 224
BspACI CCGC 2 cut(s) 243, 246
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 121, 277
BspFNI CGCG 1 cut(s) 326
BspLI GGNNCC 1 cut(s) 141
BsrDI GCAATG 1 cut(s) 235
BsrFI RCCGGY 1 cut(s) 224
BsrI ACTGG 1 cut(s) 83
BssAI RCCGGY 1 cut(s) 224
BssNI GRCGYC 1 cut(s) 260
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 101, 226, 241
BstDEI CTNAG 2 cut(s) 108, 264
BstFNI CGCG 1 cut(s) 326
BstHHI GCGC 1 cut(s) 328
BstMAI GTCTC 2 cut(s) 44, 267
BstUI CGCG 1 cut(s) 326
BstV1I GCAGC 1 cut(s) 223
BsuRI GGCC 1 cut(s) 224
Cac8I GCNNGC 3 cut(s) 101, 226, 241
CaiI CAGNNNCTG 1 cut(s) 271
CfoI GCGC 1 cut(s) 328
Cfr10I RCCGGY 1 cut(s) 224
Cfr13I GGNCC 1 cut(s) 222
CseI GACGC 1 cut(s) 249
Csp6I GTAC 1 cut(s) 322
CviJI RGCY 9 cut(s) 10, 37, 99, 103, 122, 161, 224, 236, 271
CviKI_1 RGCY 9 cut(s) 10, 37, 99, 103, 122, 161, 224, 236, 271
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 2 cut(s) 108, 264
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 89
Esp3I CGTCTC 1 cut(s) 267
FalI AAGNNNNNCTT 2 cut(s) 88, 120
Fnu4HI GCNGC 2 cut(s) 237, 244
Fsp4HI GCNGC 2 cut(s) 237, 244
FspBI CTAG 1 cut(s) 331
GlaI GCGC 1 cut(s) 327
GluI GCNGC 2 cut(s) 237, 244
HaeIII GGCC 1 cut(s) 224
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 249
HhaI GCGC 1 cut(s) 328
Hin1I GRCGYC 1 cut(s) 260
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HinfI GANTC 1 cut(s) 317
HpaII CCGG 1 cut(s) 225
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 3 cut(s) 45, 111, 267
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 54, 114, 163
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 1 cut(s) 151
HpyF3I CTNAG 2 cut(s) 108, 264
Hsp92I GRCGYC 1 cut(s) 260
HspAI GCGC 1 cut(s) 326
KroI GCCGGC 1 cut(s) 224
KroNI GCCGGC 1 cut(s) 226
LmnI GCTCC 2 cut(s) 63, 233
LpnPI CCDG 5 cut(s) 96, 113, 225, 238, 296
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 1 cut(s) 331
MaeIII GTNAC 2 cut(s) 190, 277
MboII GAAGA 1 cut(s) 146
MluCI AATT 5 cut(s) 14, 71, 78, 89, 205
MlyI GAGTC 1 cut(s) 326
MnlI CCTC 6 cut(s) 130, 171, 174, 207, 213, 282
MroNI GCCGGC 1 cut(s) 224
MroXI GAANNNNTTC 1 cut(s) 138
MspI CCGG 1 cut(s) 225
MvnI CGCG 1 cut(s) 326
NaeI GCCGGC 1 cut(s) 226
NgoMIV GCCGGC 1 cut(s) 224
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 2 cut(s) 190, 277
PdiI GCCGGC 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 138
Pfl23II CGTACG 1 cut(s) 321
PkrI GCNGC 2 cut(s) 238, 245
PleI GAGTC 1 cut(s) 325
PpsI GAGTC 1 cut(s) 325
PspLI CGTACG 1 cut(s) 321
PspN4I GGNNCC 1 cut(s) 141
PspPI GGNCC 1 cut(s) 222
PstNI CAGNNNCTG 1 cut(s) 271
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
SatI GCNGC 2 cut(s) 237, 244
Sau96I GGNCC 1 cut(s) 222
SchI GAGTC 1 cut(s) 326
SetI ASST 6 cut(s) 12, 141, 174, 205, 238, 273
SmlI CTYRAG 1 cut(s) 94
SmoI CTYRAG 1 cut(s) 94
Sse9I AATT 5 cut(s) 14, 71, 78, 89, 205
SsiI CCGC 2 cut(s) 243, 246
SspMI CTAG 1 cut(s) 331
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 4 cut(s) 87, 124, 199, 284
TasI AATT 5 cut(s) 14, 71, 78, 89, 205
TauI GCSGC 1 cut(s) 246
TseFI GTSAC 2 cut(s) 190, 277
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 2 cut(s) 190, 277
XapI RAATTY 3 cut(s) 14, 71, 89
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.