Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Forward (+)

29630578 .. 29635682

Gene Structure 5105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGAAGAAGCGGAAAATTGAAAGGAAGGACCAATTGTTTTCTGTCTTGGATCAGTTACAGAGACTTTTGACAGAAATAAGCAGGTCCTTGGAAGATAATCTGTACAAAATGGTGGTGGAAGCAGAGACCGACTTATCCTTGAAAAGGCTAGAAGAACTACACAAGCAGTTGCTTGAATATCAAGATGAGAAGGTTTTGAACCGTTTGAAGCTTATAATAGACCACATGAGCATGCTACACTCCCTGTGCTTTGTTCTTGGTATGGATTTTAAACACACAATTCATGAAATCCACCCCACCTTAGATGATCTTAATGGAGAAAAAGACATAACGAACAACACAATCGAGGGTTTGGCTAATTCAGTTCAGATATTGAGAGAGGTCAAGATACAGAGATGGCAGAGGGTTGAAGCTGAAGTGTCAAAGTTGGAGCAGCTCAAGTCAATTAAGCTGAAAGAGATCCTTCTGAAAAAGAAGTTGGAACCGGAGGAGGTATGCAGACAGTCTCACATGGTTACAGAAATATTGAGTGCTGCAGAATACTCAAATGAAGCTATAGAGTCTGGAGTTCGAATGGTTGTTGGTGGTGGAGGACTACACTTATTTAGAATTGGCCCTCTATTTGGAGATGAAGAATTGCGGGGTGGCTCCAGGAGAATAAGGATGGATGAATTAGAAGTGAGTTGTGGACCTTGCATGCCTGTTGGACAAATTGAGCTTCAAATCGCAAGGGCAAAAGAGGAAGCTCTAAGCAGGAAAGAAATACTAGAAAAGATTGAAAAGTGGTTGGCTGCTTATCAAGAAGAATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

270

Amino Acids

31.24

Weight (kDa)

5.74

Isoelectric Point (pI)

57.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP65_ASE1	PF03999	1 - 137	5.1e-09	Microtubule associated protein (MAP65/ASE1 family)
MAP65_ASE1	PF03999	134 - 263	4e-08	Microtubule associated protein (MAP65/ASE1 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	72
AciI	CCGC	2 cut(s)	10, 640
AclWI	GGATC	2 cut(s)	57, 454
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	144, 623
AgsI	TTSAA	8 cut(s)	20, 142, 176, 199, 208, 410, 722, 779
AjnI	CCWGG	1 cut(s)	650
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	7 cut(s)	211, 413, 436, 451, 554, 718, 746
AluI	AGCT	7 cut(s)	211, 413, 436, 451, 554, 718, 746
Alw26I	GTCTC	3 cut(s)	55, 119, 510
AlwI	GGATC	2 cut(s)	57, 454
AoxI	GGCC	1 cut(s)	613
ApeKI	GCWGC	3 cut(s)	433, 533, 791
AspS9I	GGNCC	4 cut(s)	28, 84, 614, 689
AsuII	TTCGAA	1 cut(s)	571
AvaII	GGWCC	3 cut(s)	28, 84, 689
BbvI	GCAGC	3 cut(s)	445, 520, 778
BccI	CCATC	2 cut(s)	390, 658
BciT130I	CCWGG	1 cut(s)	652
BcoDI	GTCTC	3 cut(s)	55, 119, 510
BfaI	CTAG	3 cut(s)	149, 767, 811
BfmI	CTRYAG	2 cut(s)	534, 555
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	434, 534, 792
BlsI	GCNGC	3 cut(s)	435, 535, 793
Bme1390I	CCNGG	1 cut(s)	652
Bme18I	GGWCC	3 cut(s)	28, 84, 689
BmgT120I	GGNCC	4 cut(s)	28, 84, 614, 689
BmiI	GGNNCC	2 cut(s)	483, 649
BmrFI	CCNGG	1 cut(s)	652
BpmI	CTGGAG	2 cut(s)	585, 634
Bpu14I	TTCGAA	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	422
BsaI	GGTCTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	87
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 623
BseBI	CCWGG	1 cut(s)	652
BseDI	CCNNGG	1 cut(s)	87
BseGI	GGATG	2 cut(s)	669, 673
BseLI	CCNNNNNNNGG	2 cut(s)	144, 623
BseRI	GAGGAG	1 cut(s)	503
BseXI	GCAGC	3 cut(s)	445, 520, 778
BshFI	GGCC	1 cut(s)	615
BsiSI	CCGG	1 cut(s)	485
BslI	CCNNNNNNNGG	2 cut(s)	144, 623
BsmAI	GTCTC	3 cut(s)	55, 119, 510
BsnI	GGCC	1 cut(s)	615
Bso31I	GGTCTC	1 cut(s)	119
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	49, 307, 459
BspACI	CCGC	2 cut(s)	10, 640
BspANI	GGCC	1 cut(s)	615
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	2 cut(s)	483, 649
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	57, 454
BspT104I	TTCGAA	1 cut(s)	571
BspTNI	GGTCTC	1 cut(s)	119
BsrGI	TGTACA	1 cut(s)	102
BssECI	CCNNGG	1 cut(s)	87
BssMI	GATC	3 cut(s)	49, 307, 459
BssT1I	CCWWGG	1 cut(s)	87
Bst2UI	CCWGG	1 cut(s)	652
Bst4CI	ACNGT	2 cut(s)	203, 504
BstAUI	TGTACA	1 cut(s)	102
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	2 cut(s)	233, 698
BstDEI	CTNAG	2 cut(s)	301, 749
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	2 cut(s)	669, 673
BstKTI	GATC	3 cut(s)	52, 310, 462
BstMAI	GTCTC	3 cut(s)	55, 119, 510
BstMBI	GATC	3 cut(s)	49, 307, 459
BstNI	CCWGG	1 cut(s)	652
BstNSI	RCATGY	2 cut(s)	235, 700
BstSCI	CCNGG	1 cut(s)	650
BstSFI	CTRYAG	2 cut(s)	534, 555
BstV1I	GCAGC	3 cut(s)	445, 520, 778
BstX2I	RGATCY	1 cut(s)	459
BstYI	RGATCY	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	615
BtsCI	GGATG	2 cut(s)	669, 673
BveI	ACCTGC	1 cut(s)	72
Cac8I	GCNNGC	2 cut(s)	233, 698
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	4 cut(s)	28, 84, 614, 689
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	5 cut(s)	226, 232, 284, 511, 697
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	301, 749
DpnI	GATC	3 cut(s)	51, 309, 461
DpnII	GATC	3 cut(s)	49, 307, 459
DraI	TTTAAA	1 cut(s)	271
Eco130I	CCWWGG	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	119
Eco47I	GGWCC	3 cut(s)	28, 84, 689
Eco57I	CTGAAG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	84
EcoRII	CCWGG	1 cut(s)	650
EcoT14I	CCWWGG	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	87
FaeI	CATG	5 cut(s)	229, 235, 287, 514, 700
FalI	AAGNNNNNCTT	2 cut(s)	447, 479
FatI	CATG	5 cut(s)	225, 231, 283, 510, 696
FauI	CCCGC	1 cut(s)	633
Fnu4HI	GCNGC	3 cut(s)	434, 534, 792
FokI	GGATG	2 cut(s)	676, 680
Fsp4HI	GCNGC	3 cut(s)	434, 534, 792
FspBI	CTAG	3 cut(s)	149, 767, 811
GluI	GCNGC	3 cut(s)	434, 534, 792
GsuI	CTGGAG	2 cut(s)	585, 634
HaeIII	GGCC	1 cut(s)	615
HapII	CCGG	1 cut(s)	485
Hin1II	CATG	5 cut(s)	229, 235, 287, 514, 700
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	2 cut(s)	560, 806
HpaII	CCGG	1 cut(s)	485
Hpy166II	GTNNAC	1 cut(s)	689
Hpy188I	TCNGA	2 cut(s)	369, 468
Hpy188III	TCNNGA	5 cut(s)	182, 284, 385, 564, 800
Hpy8I	GTNNAC	1 cut(s)	689
HpyAV	CCTTC	3 cut(s)	19, 184, 473
HpyCH4III	ACNGT	2 cut(s)	203, 504
HpyCH4V	TGCA	3 cut(s)	498, 536, 696
HpyF3I	CTNAG	2 cut(s)	301, 749
Hsp92II	CATG	5 cut(s)	229, 235, 287, 514, 700
Kzo9I	GATC	3 cut(s)	49, 307, 459
LmnI	GCTCC	2 cut(s)	430, 653
LpnPI	CCDG	8 cut(s)	67, 257, 498, 549, 637, 664, 714, 739
Lsp1109I	GCAGC	3 cut(s)	445, 520, 778
MaeI	CTAG	3 cut(s)	149, 767, 811
MaeIII	GTNAC	2 cut(s)	54, 514
MalI	GATC	3 cut(s)	51, 309, 461
MboI	GATC	3 cut(s)	49, 307, 459
MboII	GAAGA	4 cut(s)	16, 104, 164, 644
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	459
MluCI	AATT	9 cut(s)	15, 32, 279, 358, 444, 609, 635, 671, 711
MlyI	GAGTC	1 cut(s)	569
MmeI	TCCRAC	3 cut(s)	408, 459, 685
MnlI	CCTC	8 cut(s)	340, 373, 396, 481, 484, 584, 627, 733
MseI	TTAA	3 cut(s)	270, 312, 447
MslI	CAYNNNNRTG	1 cut(s)	230
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	652
MunI	CAATTG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	652
NdeII	GATC	3 cut(s)	49, 307, 459
NlaIII	CATG	5 cut(s)	229, 235, 287, 514, 700
NlaIV	GGNNCC	2 cut(s)	483, 649
NspI	RCATGY	2 cut(s)	235, 700
NspV	TTCGAA	1 cut(s)	571
PaeI	GCATGC	2 cut(s)	235, 700
PagI	TCATGA	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	806
PfoI	TCCNGGA	1 cut(s)	650
PkrI	GCNGC	3 cut(s)	435, 535, 793
PleI	GAGTC	1 cut(s)	568
PpsI	GAGTC	1 cut(s)	568
PpuMI	RGGWCCY	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	84
Psp6I	CCWGG	1 cut(s)	650
PspGI	CCWGG	1 cut(s)	650
PspN4I	GGNNCC	2 cut(s)	483, 649
PspPI	GGNCC	4 cut(s)	28, 84, 614, 689
PspPPI	RGGWCCY	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	459
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	270, 312, 447
SatI	GCNGC	3 cut(s)	434, 534, 792
Sau3AI	GATC	3 cut(s)	49, 307, 459
Sau96I	GGNCC	4 cut(s)	28, 84, 614, 689
SchI	GAGTC	1 cut(s)	569
ScrFI	CCNGG	1 cut(s)	652
SfcI	CTRYAG	2 cut(s)	534, 555
SfuI	TTCGAA	1 cut(s)	571
SinI	GGWCC	3 cut(s)	28, 84, 689
SmiMI	CAYNNNNRTG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SphI	GCATGC	2 cut(s)	235, 700
Sse9I	AATT	9 cut(s)	15, 32, 279, 358, 444, 609, 635, 671, 711
SsiI	CCGC	2 cut(s)	10, 640
SspI	AATATT	1 cut(s)	525
SspMI	CTAG	3 cut(s)	149, 767, 811
StyD4I	CCNGG	1 cut(s)	650
StyI	CCWWGG	1 cut(s)	87
TaaI	ACNGT	2 cut(s)	203, 504
TaqI	TCGA	2 cut(s)	345, 571
TaqII	GACCGA	1 cut(s)	143
TasI	AATT	9 cut(s)	15, 32, 279, 358, 444, 609, 635, 671, 711
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	3 cut(s)	270, 312, 447
Tru9I	TTAA	3 cut(s)	270, 312, 447
TseI	GCWGC	3 cut(s)	433, 533, 791
TspDTI	ATGAA	6 cut(s)	17, 272, 300, 564, 645, 684
VpaK11BI	GGWCC	3 cut(s)	28, 84, 689
XagI	CCTNNNNNAGG	1 cut(s)	142
XceI	RCATGY	2 cut(s)	235, 700
XspI	CTAG	3 cut(s)	149, 767, 811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.