Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Forward (+)

24821417 .. 24823065

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG175000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGAGGAGGGCTCTGATTCTCAATTCTTTTTCTCTCTCTCTGGTTGTAAAGGTTATCAAGGGCTGCGTTAAAGATTGGGAAGCTGTTTCCAAGTGGAATCCATCGAATGGCGACCTTGAATATTTGCAGTGGAAAGCTGCAGCTGGTAGATGGACTGAGACATTACTAGTTGCGTACAAGACACTGGGAGTAGTGTTTGGGGGACTTGTGACATCGCCACTCTATGTTTACTCTTTGATGCCACTCAAATCTCCCACTGTAGATGACTACTTGGGCATTACAACATCATGTTTTGGACCCTTACTCTTATTAGAGTCGTCAAATATGCCACCATTGCTCTTAGAGCGGATGATGATGGTGAAGGTAATTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

125

Amino Acids

13.93

Weight (kDa)

8.95

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	110
AccBSI	CCGCTC	1 cut(s)	349
AciI	CCGC	1 cut(s)	349
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	110
AgsI	TTSAA	1 cut(s)	122
AhlI	ACTAGT	1 cut(s)	169
AluBI	AGCT	3 cut(s)	86, 140, 146
AluI	AGCT	3 cut(s)	86, 140, 146
Alw26I	GTCTC	1 cut(s)	155
ApeKI	GCWGC	3 cut(s)	66, 140, 143
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	16, 373
AvaII	GGWCC	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	16
BbvI	GCAGC	3 cut(s)	53, 127, 155
BccI	CCATC	3 cut(s)	112, 147, 352
BcoDI	GTCTC	1 cut(s)	155
BcuI	ACTAGT	1 cut(s)	169
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	2 cut(s)	141, 261
BisI	GCNGC	3 cut(s)	67, 141, 144
BlsI	GCNGC	3 cut(s)	68, 142, 145
Bme18I	GGWCC	1 cut(s)	299
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	301
BmrI	ACTGGG	1 cut(s)	197
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	197
BplI	GAGNNNNNCTC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	357
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	335
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	1 cut(s)	192
BseRI	GAGGAG	1 cut(s)	22
BseXI	GCAGC	3 cut(s)	53, 127, 155
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	110
BsmAI	GTCTC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	16
BspACI	CCGC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	301
BspMAI	CTGCAG	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	349
BsrDI	GCAATG	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	192
Bst4CI	ACNGT	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	159, 343
BstF5I	GGATG	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	155
BstMWI	GCNNNNNNNGC	2 cut(s)	337, 346
BstSFI	CTRYAG	2 cut(s)	141, 261
BstV1I	GCAGC	3 cut(s)	53, 127, 155
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	357
BtsI	GCAGTG	1 cut(s)	137
BtsIMutI	CAGTG	3 cut(s)	137, 185, 258
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	291
CviJI	RGCY	5 cut(s)	14, 66, 86, 140, 146
CviKI_1	RGCY	5 cut(s)	14, 66, 86, 140, 146
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	159, 343
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	299
EcoT38I	GRGCYC	1 cut(s)	16
FaeI	CATG	1 cut(s)	294
FaiI	YATR	4 cut(s)	228, 292, 329, 374
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	1 cut(s)	290
Fnu4HI	GCNGC	3 cut(s)	67, 141, 144
FokI	GGATG	1 cut(s)	364
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	3 cut(s)	67, 141, 144
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	3 cut(s)	67, 141, 144
Hin1II	CATG	1 cut(s)	294
HinfI	GANTC	3 cut(s)	19, 100, 317
HphI	GGTGA	2 cut(s)	16, 373
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	1 cut(s)	18
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	2 cut(s)	130, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	337, 346
HpyF3I	CTNAG	2 cut(s)	159, 343
Hsp92II	CATG	1 cut(s)	294
LpnPI	CCDG	3 cut(s)	29, 132, 173
Lsp1109I	GCAGC	3 cut(s)	53, 127, 155
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	170
MaeIII	GTNAC	1 cut(s)	211
MbiI	CCGCTC	1 cut(s)	349
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	2 cut(s)	25, 369
MlyI	GAGTC	1 cut(s)	326
MnlI	CCTC	1 cut(s)	3
MseI	TTAA	1 cut(s)	72
MspA1I	CMGCKG	1 cut(s)	146
MwoI	GCNNNNNNNGC	2 cut(s)	337, 346
NlaIII	CATG	1 cut(s)	294
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	19, 100
PflMI	CCANNNNNTGG	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	68, 142, 145
PleI	GAGTC	1 cut(s)	325
PpsI	GAGTC	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	299
PstI	CTGCAG	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	3 cut(s)	67, 141, 144
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	1 cut(s)	326
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	6 cut(s)	57, 88, 120, 142, 148, 369
SfaNI	GCATC	1 cut(s)	231
SfcI	CTRYAG	2 cut(s)	141, 261
SinI	GGWCC	1 cut(s)	299
SpeI	ACTAGT	1 cut(s)	169
Sse9I	AATT	2 cut(s)	25, 369
SsiI	CCGC	1 cut(s)	349
SspI	AATATT	1 cut(s)	125
SspMI	CTAG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	107
TasI	AATT	2 cut(s)	25, 369
TfiI	GAWTC	2 cut(s)	19, 100
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	3 cut(s)	137, 192, 265
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	66, 140, 143
Tsp45I	GTSAC	1 cut(s)	211
TspRI	CASTG	3 cut(s)	137, 192, 265
Van91I	CCANNNNNTGG	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	299
XspI	CTAG	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.