Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Forward (+)

72966024 .. 72967674

Gene Structure 1651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG521200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTGGTGGAAGAGACCGACTTGTCCTTGAAAAGGCTAGAAGAACTACATAGGCAGTTGCTTGAATATCAAGATGAGAAGAGGAACCGTTTGAAGCTGATAATGGACCACATGAGCATGCTAAACTCCCTGTGCTTGGTTCTTGGTATGGATTTTAAACACACAATTCATGAAATCCACCCCACCTTAGATGATCTTAATGGAGAAAAAGATGTAGCGAACAGCACAATCGAGGGTTTGGCTAATTCGGTTCAAATATTGAGAGAGGTCAAGATACAGAGATGGCAGAAGCTTCAAACTTTTGCAAGTGCCCTCTTGGAGATGTGGAATCTGATGGATACAACCATGGAGGAGCAAAAGAAATATCAAAATTTAACTAGTCGCATAGCTGCTTCAGAATTTGAAATCACTGAGCCTAACATTCTTTCTGTAGACCTTCTAAATGATTCTCACAAGGTTACAGAAATACTGAGTGCTGCAAAATACTCAAATGAAGCTATAGAGTCTGGAGCTACGGACCCTGCATGCCTGTTGGAACAAATTGAGCTTCAAATCGCAAGGGCAAAAGAGGAAGCTCTAAGCAGGAAAGAAATACTAGAAAAGATTGAAAAGTGGTTGGCTGCTTGTCAAGAAGAATCCTGGCTAGAGGAGTACAATAGGGATGATAATCGCTATACAGAAGGAAGAGGTGCTCATATTACTTTGAAACGTGCAGAGAAAGTGCGTGTTTTAGCAAACAAAATTCCTGGTAAAGACTTGGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

255

Amino Acids

29.46

Weight (kDa)

5.18

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP65_ASE1	PF03999	4 - 146	8.6e-15	Microtubule associated protein (MAP65/ASE1 family)
MAP65_ASE1	PF03999	150 - 250	2.7e-21	Microtubule associated protein (MAP65/ASE1 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	432
AcsI	RAATTY	3 cut(s)	370, 398, 741
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	653
AfiI	CCNNNNNNNGG	2 cut(s)	33, 136
AgsI	TTSAA	9 cut(s)	31, 65, 94, 254, 296, 404, 551, 608, 706
AhlI	ACTAGT	1 cut(s)	377
AjnI	CCWGG	2 cut(s)	638, 745
AluBI	AGCT	7 cut(s)	97, 292, 389, 497, 512, 547, 575
AluI	AGCT	7 cut(s)	97, 292, 389, 497, 512, 547, 575
Alw21I	GWGCWC	1 cut(s)	694
Alw26I	GTCTC	1 cut(s)	8
ApeKI	GCWGC	3 cut(s)	389, 476, 620
ApoI	RAATTY	3 cut(s)	370, 398, 741
AspS9I	GGNCC	2 cut(s)	106, 517
AvaII	GGWCC	2 cut(s)	106, 517
BaeGI	GKGCMC	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	694
BbvI	GCAGC	3 cut(s)	376, 463, 607
BccI	CCATC	2 cut(s)	276, 328
BciT130I	CCWGG	2 cut(s)	640, 747
BciVI	GTATCC	1 cut(s)	331
BcoDI	GTCTC	1 cut(s)	8
BcuI	ACTAGT	1 cut(s)	377
BfaI	CTAG	4 cut(s)	38, 378, 596, 644
BfmI	CTRYAG	2 cut(s)	429, 498
BfuI	GTATCC	1 cut(s)	331
BisI	GCNGC	3 cut(s)	390, 477, 621
BlsI	GCNGC	3 cut(s)	391, 478, 622
Bme1390I	CCNGG	2 cut(s)	640, 747
Bme18I	GGWCC	2 cut(s)	106, 517
BmgT120I	GGNCC	2 cut(s)	106, 517
BmiI	GGNNCC	2 cut(s)	86, 519
BmrFI	CCNGG	2 cut(s)	640, 747
BpmI	CTGGAG	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	666
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 136
Bse8I	GATNNNNATC	1 cut(s)	666
BseBI	CCWGG	2 cut(s)	640, 747
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	667
BseJI	GATNNNNATC	1 cut(s)	666
BseLI	CCNNNNNNNGG	2 cut(s)	33, 136
BseMII	CTCAG	2 cut(s)	402, 461
BseRI	GAGGAG	2 cut(s)	365, 662
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	3 cut(s)	376, 463, 607
BsgI	GTGCAG	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	694
BslI	CCNNNNNNNGG	2 cut(s)	33, 136
BsmAI	GTCTC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	313, 694
Bsp143I	GATC	1 cut(s)	193
Bsp19I	CCATGG	1 cut(s)	345
BspCNI	CTCAG	2 cut(s)	403, 462
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	86, 519
BspTNI	GGTCTC	1 cut(s)	8
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	345
Bst2UI	CCWGG	2 cut(s)	640, 747
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	3 cut(s)	6, 74, 679
BstC8I	GCNNGC	2 cut(s)	119, 526
BstDEI	CTNAG	4 cut(s)	187, 411, 470, 578
BstDSI	CCRYGG	1 cut(s)	345
BstENI	CCTNNNNNAGG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	667
BstKTI	GATC	1 cut(s)	196
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	1 cut(s)	193
BstNI	CCWGG	2 cut(s)	640, 747
BstNSI	RCATGY	2 cut(s)	121, 528
BstSCI	CCNGG	2 cut(s)	638, 745
BstSFI	CTRYAG	2 cut(s)	429, 498
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	3 cut(s)	376, 463, 607
BsuI	GTATCC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	119, 526
CciI	TCATGA	1 cut(s)	169
Cfr13I	GGNCC	2 cut(s)	106, 517
Csp6I	GTAC	1 cut(s)	652
CviAII	CATG	5 cut(s)	112, 118, 170, 346, 525
CviQI	GTAC	1 cut(s)	652
DdeI	CTNAG	4 cut(s)	187, 411, 470, 578
DpnI	GATC	1 cut(s)	195
DpnII	GATC	1 cut(s)	193
DraI	TTTAAA	1 cut(s)	157
DrdI	GACNNNNNNGTC	1 cut(s)	22
DseDI	GACNNNNNNGTC	1 cut(s)	22
Eam1104I	CTCTTC	3 cut(s)	6, 74, 679
EarI	CTCTTC	3 cut(s)	6, 74, 679
Eco130I	CCWWGG	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	8
Eco47I	GGWCC	2 cut(s)	106, 517
Eco57I	CTGAAG	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	31
EcoRII	CCWGG	2 cut(s)	638, 745
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	5 cut(s)	115, 121, 173, 349, 528
FatI	CATG	5 cut(s)	111, 117, 169, 345, 524
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	390, 477, 621
FokI	GGATG	1 cut(s)	674
Fsp4HI	GCNGC	3 cut(s)	390, 477, 621
FspBI	CTAG	4 cut(s)	38, 378, 596, 644
GluI	GCNGC	3 cut(s)	390, 477, 621
GsuI	CTGGAG	1 cut(s)	528
Hin1II	CATG	5 cut(s)	115, 121, 173, 349, 528
HindIII	AAGCTT	1 cut(s)	290
HinfI	GANTC	4 cut(s)	328, 446, 503, 635
Hpy166II	GTNNAC	1 cut(s)	433
Hpy188I	TCNGA	2 cut(s)	333, 397
Hpy188III	TCNNGA	5 cut(s)	71, 170, 271, 507, 629
Hpy8I	GTNNAC	1 cut(s)	433
HpyAV	CCTTC	2 cut(s)	446, 674
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	709
HpyCH4V	TGCA	4 cut(s)	305, 479, 524, 713
HpyF3I	CTNAG	4 cut(s)	187, 411, 470, 578
HpySE526I	ACGT	1 cut(s)	709
Hsp92II	CATG	5 cut(s)	115, 121, 173, 349, 528
Kzo9I	GATC	1 cut(s)	193
LmnI	GCTCC	2 cut(s)	352, 509
LpnPI	CCDG	9 cut(s)	143, 492, 534, 542, 568, 625, 652, 732, 759
Lsp1109I	GCAGC	3 cut(s)	376, 463, 607
MaeI	CTAG	4 cut(s)	38, 378, 596, 644
MaeII	ACGT	1 cut(s)	709
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	1 cut(s)	195
MboI	GATC	1 cut(s)	193
MboII	GAAGA	5 cut(s)	23, 53, 91, 644, 696
MhlI	GDGCHC	2 cut(s)	313, 694
MluCI	AATT	6 cut(s)	165, 244, 370, 398, 540, 741
MlyI	GAGTC	1 cut(s)	512
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	8 cut(s)	75, 226, 259, 323, 343, 562, 640, 680
MseI	TTAA	4 cut(s)	156, 198, 374, 762
MslI	CAYNNNNRTG	1 cut(s)	116
MspR9I	CCNGG	2 cut(s)	640, 747
MvaI	CCWGG	2 cut(s)	640, 747
NcoI	CCATGG	1 cut(s)	345
NdeII	GATC	1 cut(s)	193
NlaIII	CATG	5 cut(s)	115, 121, 173, 349, 528
NlaIV	GGNNCC	2 cut(s)	86, 519
NspI	RCATGY	2 cut(s)	121, 528
PaeI	GCATGC	2 cut(s)	121, 528
PagI	TCATGA	1 cut(s)	169
PfeI	GAWTC	3 cut(s)	328, 446, 635
PkrI	GCNGC	3 cut(s)	391, 478, 622
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	638, 745
PspGI	CCWGG	2 cut(s)	638, 745
PspN4I	GGNNCC	2 cut(s)	86, 519
PspPI	GGNCC	2 cut(s)	106, 517
RsaI	GTAC	1 cut(s)	653
RsaNI	GTAC	1 cut(s)	652
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	4 cut(s)	156, 198, 374, 762
SatI	GCNGC	3 cut(s)	390, 477, 621
Sau3AI	GATC	1 cut(s)	193
Sau96I	GGNCC	2 cut(s)	106, 517
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	640, 747
SduI	GDGCHC	2 cut(s)	313, 694
SfcI	CTRYAG	2 cut(s)	429, 498
SinI	GGWCC	2 cut(s)	106, 517
SmiMI	CAYNNNNRTG	1 cut(s)	116
SpeI	ACTAGT	1 cut(s)	377
SphI	GCATGC	2 cut(s)	121, 528
Sse9I	AATT	6 cut(s)	165, 244, 370, 398, 540, 741
SspI	AATATT	1 cut(s)	258
SspMI	CTAG	4 cut(s)	38, 378, 596, 644
StyD4I	CCNGG	2 cut(s)	638, 745
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	712
TaqI	TCGA	1 cut(s)	231
TaqII	GACCGA	1 cut(s)	32
TasI	AATT	6 cut(s)	165, 244, 370, 398, 540, 741
TatI	WGTACW	1 cut(s)	651
TfiI	GAWTC	3 cut(s)	328, 446, 635
Tru1I	TTAA	4 cut(s)	156, 198, 374, 762
Tru9I	TTAA	4 cut(s)	156, 198, 374, 762
TscAI	CASTG	1 cut(s)	415
TseI	GCWGC	3 cut(s)	389, 476, 620
TspDTI	ATGAA	3 cut(s)	158, 186, 507
TspGWI	ACGGA	1 cut(s)	530
TspRI	CASTG	1 cut(s)	415
VpaK11BI	GGWCC	2 cut(s)	106, 517
XagI	CCTNNNNNAGG	1 cut(s)	31
XapI	RAATTY	3 cut(s)	370, 398, 741
XceI	RCATGY	2 cut(s)	121, 528
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	4 cut(s)	38, 378, 596, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.