Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Forward (+)

21290549 .. 21293109

Gene Structure 2561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028306

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTTCGACCTGCTTTCTCTCCCTCAACTTTGGCGAGCACAACATCTACCAACAAAGACTATAGGCCCAATGTGGATGCGAGGTTATTTATTAACGAAACGAGAATTGGCGACGACATGTTAAAATTCTTGGGCCCTGATTTAAGTCATCTAACAGTCATAACCAATTCTCAAAGGTGCTGGTGGAAGGATCAAGTTATCAAGGGTTGTGTTAAAGATTGGGAAGCTGTTTCCAAGTGGAATCCATCGAATGGCGGCCTTGAATATTTGCAGTGCGTGGAGACATATGTGTTGTCCTGGGTGAGAAACCACCACATTTTGATCATAAGATCAGTGGAAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0003682 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0007049 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016491 GO:0016569 GO:0016570 GO:0016577 GO:0016705 GO:0016706 GO:0019219 GO:0019222 GO:0019538 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032451 GO:0032452 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051213 GO:0051252 GO:0051254 GO:0051276 GO:0051864 GO:0055114 GO:0060255 GO:0065007 GO:0070076 GO:0070544 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0140096 GO:1901564 GO:1902680 GO:1903047 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_8

Protein Analysis

115

Amino Acids

13.11

Weight (kDa)

7.74

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	251
AciI	CCGC	1 cut(s)	255
AclWI	GGATC	1 cut(s)	198
AcsI	RAATTY	1 cut(s)	125
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	90, 122
AluBI	AGCT	1 cut(s)	227
AluI	AGCT	1 cut(s)	227
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	1 cut(s)	198
AoxI	GGCC	3 cut(s)	65, 133, 256
ApaI	GGGCCC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	125
AspS9I	GGNCC	3 cut(s)	66, 133, 134
AsuHPI	GGTGA	1 cut(s)	313
BaeGI	GKGCMC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	41
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	298
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	275
BfmI	CTRYAG	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	298
BmgT120I	GGNCC	3 cut(s)	66, 133, 134
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	298
BmsI	GCATC	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	298
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	82
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseSI	GKGCMC	1 cut(s)	137
BshFI	GGCC	3 cut(s)	67, 135, 258
BsiHKAI	GWGCWC	1 cut(s)	41
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	3 cut(s)	67, 135, 258
Bsp120I	GGGCCC	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	41, 137
Bsp143I	GATC	3 cut(s)	190, 321, 329
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	3 cut(s)	67, 135, 258
BspLI	GGNNCC	1 cut(s)	135
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	3 cut(s)	190, 321, 329
Bst2UI	CCWGG	1 cut(s)	298
Bst4CI	ACNGT	1 cut(s)	157
BstC8I	GCNNGC	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	3 cut(s)	193, 324, 332
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	3 cut(s)	190, 321, 329
BstNI	CCWGG	1 cut(s)	298
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	61
BstSLI	GKGCMC	1 cut(s)	137
BsuRI	GGCC	3 cut(s)	67, 135, 258
BtsCI	GGATG	1 cut(s)	82
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	278, 339
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	66, 133, 134
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	4 cut(s)	67, 135, 227, 258
CviKI_1	RGCY	4 cut(s)	67, 135, 227, 258
DpnI	GATC	3 cut(s)	192, 323, 331
DpnII	GATC	3 cut(s)	190, 321, 329
Eco24I	GRGCYC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	137
FaeI	CATG	1 cut(s)	121
FaiI	YATR	6 cut(s)	63, 119, 161, 286, 288, 326
FatI	CATG	1 cut(s)	117
FauNDI	CATATG	1 cut(s)	286
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	89
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	256
GluI	GCNGC	1 cut(s)	256
HaeIII	GGCC	3 cut(s)	67, 135, 258
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	181
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	271
Hsp92II	CATG	1 cut(s)	121
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	190, 321, 329
LpnPI	CCDG	5 cut(s)	24, 150, 166, 283, 310
LweI	GCATC	1 cut(s)	67
MalI	GATC	3 cut(s)	192, 323, 331
MboI	GATC	3 cut(s)	190, 321, 329
MhlI	GDGCHC	2 cut(s)	41, 137
MluCI	AATT	3 cut(s)	105, 125, 166
MnlI	CCTC	2 cut(s)	34, 75
MseI	TTAA	4 cut(s)	93, 122, 143, 213
MspR9I	CCNGG	1 cut(s)	298
MvaI	CCWGG	1 cut(s)	298
NdeI	CATATG	1 cut(s)	286
NdeII	GATC	3 cut(s)	190, 321, 329
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	121
PciI	ACATGT	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	1 cut(s)	257
PscI	ACATGT	1 cut(s)	117
Psp6I	CCWGG	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	135
PspOMI	GGGCCC	1 cut(s)	133
PspPI	GGNCC	3 cut(s)	66, 133, 134
SaqAI	TTAA	4 cut(s)	93, 122, 143, 213
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	3 cut(s)	190, 321, 329
Sau96I	GGNCC	3 cut(s)	66, 133, 134
ScrFI	CCNGG	1 cut(s)	298
SduI	GDGCHC	2 cut(s)	41, 137
SetI	ASST	4 cut(s)	13, 86, 179, 229
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	61
Sse9I	AATT	3 cut(s)	105, 125, 166
SsiI	CCGC	1 cut(s)	255
SspI	AATATT	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	157
TaqI	TCGA	2 cut(s)	7, 248
TasI	AATT	3 cut(s)	105, 125, 166
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	241
Tru1I	TTAA	4 cut(s)	93, 122, 143, 213
Tru9I	TTAA	4 cut(s)	93, 122, 143, 213
TscAI	CASTG	2 cut(s)	278, 339
TspRI	CASTG	2 cut(s)	278, 339
Van91I	CCANNNNNTGG	1 cut(s)	251
XapI	RAATTY	1 cut(s)	125
XceI	RCATGY	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.