Rh5DG227200

microtubule binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001938
Physical Location & Seq
Reverse (-)
25608237 .. 25609211
975 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG227200.1

Sequence Viewer

Length: 558 bp
ATGGGGGTGTTTAGGACAAAAGTTGACGAGGCGAAACAGTGTAAAGCTCAACTGCAGCAAGCAATTGCTAATTGTGAAGCAGAGTTTGTAGACATATGTGCTATCCTGGGTGAGAAACCACTACATTTTGATCATAAGATCAGTGGAAGTTTGAAGAAAGAGCTTGAAATCATTATCCCACAATTGGAGGTCATGAAGAAGCGGAAAATTGAAAGGAAGGACCAATTGTTTTCTGTCTTGGATCAGTTACAGAGTCTTTCGACGGAAATAAGCAGGTCCTTGGAAGATAATCTGTACAAAATGGTGGTGGAAGAGACTGACTTGTCCTTGAAAAGGCTAGAAGAACTACATAGGCAATTGCTTGAATATCAAGATGAGAAGAGGAATCGTTTGAAGCTAATAATGGACCATATGAGCATGCTAAACACCCTGTGCTTGGTTCTTGGTATGGATTTTAAACACACAATTCATGAAATCCACCCCACCTTAGATGATCTTAATGGAGAAAAAGACGTAACGAATAGCACGAGGGTTTGGCTAATTCGGTTCAGATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MAP65_ASE1

Protein Analysis

185

Amino Acids

21.75

Weight (kDa)

6.18

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP65_ASE1 PF03999 3 - 163 2.7e-22 Microtubule associated protein (MAP65/ASE1 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 322
Acc36I ACCTGC 1 cut(s) 264
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 202
AclWI GGATC 1 cut(s) 249
AdeI CACNNNGTG 1 cut(s) 432
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 184, 333, 436
AgsI TTSAA 6 cut(s) 154, 167, 212, 331, 365, 394
AjnI CCWGG 1 cut(s) 105
AluBI AGCT 3 cut(s) 47, 163, 397
AluI AGCT 3 cut(s) 47, 163, 397
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 1 cut(s) 249
ApeKI GCWGC 1 cut(s) 55
AspS9I GGNCC 3 cut(s) 220, 276, 406
AsuHPI GGTGA 1 cut(s) 122
AvaII GGWCC 3 cut(s) 220, 276, 406
BauI CACGAG 1 cut(s) 526
BbvI GCAGC 1 cut(s) 67
BciT130I CCWGG 1 cut(s) 107
BclI TGATCA 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 264
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 107
Bme18I GGWCC 3 cut(s) 220, 276, 406
BmgT120I GGNCC 3 cut(s) 220, 276, 406
BmrFI CCNGG 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 106, 279
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 333, 436
BseBI CCWGG 1 cut(s) 107
BseDI CCNNGG 2 cut(s) 106, 279
BseLI CCNNNNNNNGG 3 cut(s) 184, 333, 436
BseXI GCAGC 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 184, 333, 436
BsmAI GTCTC 1 cut(s) 308
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 4 cut(s) 130, 138, 241, 493
BspACI CCGC 1 cut(s) 202
BspHI TCATGA 2 cut(s) 192, 469
BspMAI CTGCAG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 249
BsrGI TGTACA 1 cut(s) 294
BssECI CCNNGG 2 cut(s) 106, 279
BssMI GATC 4 cut(s) 130, 138, 241, 493
BssSI CACGAG 1 cut(s) 526
BssT1I CCWWGG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 107
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 2 cut(s) 306, 374
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 60, 419
BstDEI CTNAG 1 cut(s) 487
BstENI CCTNNNNNAGG 1 cut(s) 331
BstKTI GATC 4 cut(s) 133, 141, 244, 496
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 4 cut(s) 130, 138, 241, 493
BstNI CCWGG 1 cut(s) 107
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 1 cut(s) 67
BtsIMutI CAGTG 2 cut(s) 44, 148
BveI ACCTGC 1 cut(s) 264
Cac8I GCNNGC 2 cut(s) 60, 419
CciI TCATGA 2 cut(s) 192, 469
Cfr13I GGNCC 3 cut(s) 220, 276, 406
Csp6I GTAC 1 cut(s) 295
CviAII CATG 3 cut(s) 193, 418, 470
CviJI RGCY 5 cut(s) 47, 163, 337, 397, 538
CviKI_1 RGCY 5 cut(s) 47, 163, 337, 397, 538
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 487
DpnI GATC 4 cut(s) 132, 140, 243, 495
DpnII GATC 4 cut(s) 130, 138, 241, 493
DraI TTTAAA 1 cut(s) 457
DraIII CACNNNGTG 1 cut(s) 432
DrdI GACNNNNNNGTC 1 cut(s) 322
DseDI GACNNNNNNGTC 1 cut(s) 322
Eam1104I CTCTTC 2 cut(s) 306, 374
EarI CTCTTC 2 cut(s) 306, 374
Eco130I CCWWGG 1 cut(s) 279
Eco47I GGWCC 3 cut(s) 220, 276, 406
EcoNI CCTNNNNNAGG 1 cut(s) 331
EcoO109I RGGNCCY 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 279
FaeI CATG 3 cut(s) 196, 421, 473
FatI CATG 3 cut(s) 192, 417, 469
FauNDI CATATG 2 cut(s) 95, 411
FbaI TGATCA 1 cut(s) 130
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 338
GluI GCNGC 1 cut(s) 56
Hin1II CATG 3 cut(s) 196, 421, 473
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 253, 385
HphI GGTGA 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 25, 91
Hpy188I TCNGA 1 cut(s) 551
Hpy188III TCNNGA 3 cut(s) 193, 371, 470
Hpy8I GTNNAC 2 cut(s) 25, 91
Hpy99I CGWCG 1 cut(s) 265
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 1 cut(s) 513
HpyCH4V TGCA 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 487
HpySE526I ACGT 1 cut(s) 513
Hsp92II CATG 3 cut(s) 196, 421, 473
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 4 cut(s) 130, 138, 241, 493
LpnPI CCDG 4 cut(s) 92, 119, 259, 443
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 338
MaeII ACGT 1 cut(s) 513
MaeIII GTNAC 2 cut(s) 246, 514
MalI GATC 4 cut(s) 132, 140, 243, 495
MboI GATC 4 cut(s) 130, 138, 241, 493
MboII GAAGA 6 cut(s) 166, 208, 296, 323, 353, 391
MfeI CAATTG 4 cut(s) 63, 182, 224, 356
MluCI AATT 8 cut(s) 63, 70, 182, 207, 224, 356, 465, 540
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 4 cut(s) 22, 181, 375, 522
MseI TTAA 2 cut(s) 456, 498
MspR9I CCNGG 1 cut(s) 107
MunI CAATTG 4 cut(s) 63, 182, 224, 356
MvaI CCWGG 1 cut(s) 107
NdeI CATATG 2 cut(s) 95, 411
NdeII GATC 4 cut(s) 130, 138, 241, 493
NlaIII CATG 3 cut(s) 196, 421, 473
NspI RCATGY 1 cut(s) 421
PaeI GCATGC 1 cut(s) 421
PagI TCATGA 2 cut(s) 192, 469
PcsI WCGNNNNNNNCGW 1 cut(s) 524
PfeI GAWTC 1 cut(s) 385
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
PpuMI RGGWCCY 1 cut(s) 276
Psp5II RGGWCCY 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 105
PspGI CCWGG 1 cut(s) 105
PspPI GGNCC 3 cut(s) 220, 276, 406
PspPPI RGGWCCY 1 cut(s) 276
PstI CTGCAG 1 cut(s) 57
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 2 cut(s) 456, 498
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 4 cut(s) 130, 138, 241, 493
Sau96I GGNCC 3 cut(s) 220, 276, 406
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 1 cut(s) 107
SetI ASST 7 cut(s) 49, 165, 192, 278, 399, 488, 516
SfcI CTRYAG 1 cut(s) 53
SinI GGWCC 3 cut(s) 220, 276, 406
SphI GCATGC 1 cut(s) 421
Sse9I AATT 8 cut(s) 63, 70, 182, 207, 224, 356, 465, 540
SsiI CCGC 1 cut(s) 202
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 1 cut(s) 105
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 1 cut(s) 516
TaqI TCGA 1 cut(s) 260
TasI AATT 8 cut(s) 63, 70, 182, 207, 224, 356, 465, 540
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 385
Tru1I TTAA 2 cut(s) 456, 498
Tru9I TTAA 2 cut(s) 456, 498
TscAI CASTG 2 cut(s) 44, 148
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 3 cut(s) 209, 458, 486
TspGWI ACGGA 1 cut(s) 278
TspRI CASTG 2 cut(s) 44, 148
VpaK11BI GGWCC 3 cut(s) 220, 276, 406
XagI CCTNNNNNAGG 1 cut(s) 331
XceI RCATGY 1 cut(s) 421
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.