Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005069.1

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Forward (+)

79704 .. 80940

Gene Structure 1237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005069.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

atggaccacatgagcatgctaaactccctgtgcttggttcttggtatggattttaaacacacaattcatgaaatccaccccaccttagatgatcttaatggagaaaaagatgtagcgaacagcacaatcgagggtttggctaattcggttcaaatattgagagaggtcaagatacagagatggcagaagcttcaaacttttgcaagtgccctcttggagatgtggaatctgatggatacaaccatggaggagcaaaagaaatatcaaaatttaactagtcgcatagctgcttcagaatctgaaatcactgagcctaacattctttctgtagaccttctaaatgatgttgaagttgaagtgtcaaagttggagcagcgcaagtcaattaagctcaaagagatccttctgaaaaagaagttggaactggaggaggtatgcagacagtctcacaaggttacagaaatattgagtgccgcaaaatactcaaatgaagctatagagtctggagctacggaccctgcatgcctgttggaacaaattgagcttcaaatcgcaaaggcaaaagaggaagctctaagcaggaaagaaatactagaaaagattgaaaagtggttggctgcttgtcaagaagaatcctggctagaggagtacaatagggatgataatcgctatacagaaggaagaggtgctcatattactttgaaacgtgcagagaaagtgcgtgttttagcaaacaaaattcctggtaaagacttggttaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

254

Amino Acids

29.1

Weight (kDa)

5.36

Isoelectric Point (pI)

56.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	330
AciI	CCGC	1 cut(s)	474
AclWI	GGATC	1 cut(s)	394
AcsI	RAATTY	2 cut(s)	268, 738
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	1 cut(s)	650
AfiI	CCNNNNNNNGG	1 cut(s)	34
AgsI	TTSAA	7 cut(s)	152, 194, 350, 356, 548, 605, 703
AhlI	ACTAGT	1 cut(s)	275
AjnI	CCWGG	2 cut(s)	635, 742
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
AluBI	AGCT	7 cut(s)	190, 287, 391, 494, 509, 544, 572
AluI	AGCT	7 cut(s)	190, 287, 391, 494, 509, 544, 572
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	1 cut(s)	450
AlwI	GGATC	1 cut(s)	394
AlwNI	CAGNNNCTG	1 cut(s)	299
ApeKI	GCWGC	3 cut(s)	287, 373, 617
ApoI	RAATTY	2 cut(s)	268, 738
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	2 cut(s)	4, 514
AvaII	GGWCC	2 cut(s)	4, 514
BaeGI	GKGCMC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	3 cut(s)	274, 385, 604
BccI	CCATC	2 cut(s)	174, 226
BciT130I	CCWGG	2 cut(s)	637, 744
BciVI	GTATCC	1 cut(s)	229
BcoDI	GTCTC	1 cut(s)	450
BcuI	ACTAGT	1 cut(s)	275
BfaI	CTAG	3 cut(s)	276, 593, 641
BfmI	CTRYAG	2 cut(s)	327, 495
BfuI	GTATCC	1 cut(s)	229
BisI	GCNGC	4 cut(s)	288, 374, 474, 618
BlsI	GCNGC	4 cut(s)	289, 375, 475, 619
Bme1390I	CCNGG	2 cut(s)	637, 744
Bme18I	GGWCC	2 cut(s)	4, 514
BmgT120I	GGNCC	2 cut(s)	4, 514
BmiI	GGNNCC	1 cut(s)	516
BmrFI	CCNGG	2 cut(s)	637, 744
BpmI	CTGGAG	2 cut(s)	446, 525
BsaBI	GATNNNNATC	1 cut(s)	663
BsaJI	CCNNGG	1 cut(s)	243
Bsc4I	CCNNNNNNNGG	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	429
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	2 cut(s)	637, 744
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	664
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	3 cut(s)	263, 443, 659
BseSI	GKGCMC	1 cut(s)	211
BseXI	GCAGC	3 cut(s)	274, 385, 604
BsgI	GTGCAG	1 cut(s)	729
BsiHKAI	GWGCWC	1 cut(s)	691
BslI	CCNNNNNNNGG	1 cut(s)	34
BsmAI	GTCTC	1 cut(s)	450
Bsp1286I	GDGCHC	2 cut(s)	211, 691
Bsp143I	GATC	2 cut(s)	91, 399
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	1 cut(s)	474
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	516
BspPI	GGATC	1 cut(s)	394
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	91, 399
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	637, 744
Bst4CI	ACNGT	1 cut(s)	444
Bst6I	CTCTTC	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	17, 523
BstDEI	CTNAG	3 cut(s)	85, 309, 575
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	2 cut(s)	94, 402
BstMAI	GTCTC	1 cut(s)	450
BstMBI	GATC	2 cut(s)	91, 399
BstNI	CCWGG	2 cut(s)	637, 744
BstNSI	RCATGY	2 cut(s)	19, 525
BstSCI	CCNGG	2 cut(s)	635, 742
BstSFI	CTRYAG	2 cut(s)	327, 495
BstSLI	GKGCMC	1 cut(s)	211
BstV1I	GCAGC	3 cut(s)	274, 385, 604
BstX2I	RGATCY	1 cut(s)	399
BstYI	RGATCY	1 cut(s)	399
BsuI	GTATCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	664
BtsIMutI	CAGTG	1 cut(s)	306
Cac8I	GCNNGC	2 cut(s)	17, 523
CaiI	CAGNNNCTG	1 cut(s)	299
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	2 cut(s)	4, 514
Csp6I	GTAC	1 cut(s)	649
CviAII	CATG	5 cut(s)	10, 16, 68, 244, 522
CviQI	GTAC	1 cut(s)	649
DdeI	CTNAG	3 cut(s)	85, 309, 575
DpnI	GATC	2 cut(s)	93, 401
DpnII	GATC	2 cut(s)	91, 399
DraI	TTTAAA	1 cut(s)	55
Eam1104I	CTCTTC	1 cut(s)	676
EarI	CTCTTC	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	4, 514
Eco57I	CTGAAG	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	635, 742
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	5 cut(s)	13, 19, 71, 247, 525
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	5 cut(s)	9, 15, 67, 243, 521
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	288, 374, 474, 618
FokI	GGATG	1 cut(s)	671
Fsp4HI	GCNGC	4 cut(s)	288, 374, 474, 618
FspBI	CTAG	3 cut(s)	276, 593, 641
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	4 cut(s)	288, 374, 474, 618
GsuI	CTGGAG	2 cut(s)	446, 525
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	5 cut(s)	13, 19, 71, 247, 525
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	188
HinfI	GANTC	4 cut(s)	226, 296, 500, 632
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	4 cut(s)	231, 295, 301, 408
Hpy188III	TCNNGA	4 cut(s)	68, 169, 504, 626
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	3 cut(s)	344, 413, 671
HpyCH4III	ACNGT	1 cut(s)	444
HpyCH4IV	ACGT	1 cut(s)	706
HpyCH4V	TGCA	4 cut(s)	203, 438, 521, 710
HpyF3I	CTNAG	3 cut(s)	85, 309, 575
HpySE526I	ACGT	1 cut(s)	706
Hsp92II	CATG	5 cut(s)	13, 19, 71, 247, 525
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	91, 399
LmnI	GCTCC	3 cut(s)	250, 370, 506
Lsp1109I	GCAGC	3 cut(s)	274, 385, 604
MaeI	CTAG	3 cut(s)	276, 593, 641
MaeII	ACGT	1 cut(s)	706
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	2 cut(s)	93, 401
MboI	GATC	2 cut(s)	91, 399
MboII	GAAGA	2 cut(s)	641, 693
MflI	RGATCY	1 cut(s)	399
MhlI	GDGCHC	2 cut(s)	211, 691
MluCI	AATT	6 cut(s)	63, 142, 268, 384, 537, 738
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	3 cut(s)	348, 399, 510
MnlI	CCTC	9 cut(s)	124, 157, 221, 241, 421, 424, 559, 637, 677
MseI	TTAA	5 cut(s)	54, 96, 272, 387, 759
MslI	CAYNNNNRTG	1 cut(s)	14
MspR9I	CCNGG	2 cut(s)	637, 744
MvaI	CCWGG	2 cut(s)	637, 744
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	91, 399
NlaIII	CATG	5 cut(s)	13, 19, 71, 247, 525
NlaIV	GGNNCC	1 cut(s)	516
NspI	RCATGY	2 cut(s)	19, 525
PaeI	GCATGC	2 cut(s)	19, 525
PagI	TCATGA	1 cut(s)	67
PfeI	GAWTC	3 cut(s)	226, 296, 632
PkrI	GCNGC	4 cut(s)	289, 375, 475, 619
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	635, 742
PspGI	CCWGG	2 cut(s)	635, 742
PspN4I	GGNNCC	1 cut(s)	516
PspPI	GGNCC	2 cut(s)	4, 514
PstNI	CAGNNNCTG	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	399
RsaI	GTAC	1 cut(s)	650
RsaNI	GTAC	1 cut(s)	649
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	54, 96, 272, 387, 759
SatI	GCNGC	4 cut(s)	288, 374, 474, 618
Sau3AI	GATC	2 cut(s)	91, 399
Sau96I	GGNCC	2 cut(s)	4, 514
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	2 cut(s)	637, 744
SduI	GDGCHC	2 cut(s)	211, 691
SfcI	CTRYAG	2 cut(s)	327, 495
SinI	GGWCC	2 cut(s)	4, 514
SmiMI	CAYNNNNRTG	1 cut(s)	14
SpeI	ACTAGT	1 cut(s)	275
SphI	GCATGC	2 cut(s)	19, 525
Sse9I	AATT	6 cut(s)	63, 142, 268, 384, 537, 738
SsiI	CCGC	1 cut(s)	474
SspI	AATATT	2 cut(s)	156, 465
SspMI	CTAG	3 cut(s)	276, 593, 641
StyD4I	CCNGG	2 cut(s)	635, 742
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	444
TaiI	ACGT	1 cut(s)	709
TaqI	TCGA	1 cut(s)	129
TasI	AATT	6 cut(s)	63, 142, 268, 384, 537, 738
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	1 cut(s)	476
TfiI	GAWTC	3 cut(s)	226, 296, 632
Tru1I	TTAA	5 cut(s)	54, 96, 272, 387, 759
Tru9I	TTAA	5 cut(s)	54, 96, 272, 387, 759
TscAI	CASTG	1 cut(s)	313
TseI	GCWGC	3 cut(s)	287, 373, 617
TspDTI	ATGAA	3 cut(s)	56, 84, 504
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	1 cut(s)	313
VpaK11BI	GGWCC	2 cut(s)	4, 514
XapI	RAATTY	2 cut(s)	268, 738
XceI	RCATGY	2 cut(s)	19, 525
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	3 cut(s)	276, 593, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.