Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Reverse (-)

25557432 .. 25560012

Gene Structure 2581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31104

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGGGGGTGTTTAGGACAAAAGTTGACGAGGCGAAACAGTGTAAAGCTCAACTGCAGCAAGCAATTGCTAATTGTGAAGCAGAGTTTGTAGACATATGTGCTATCCTGGGTGAGAAACCACTACATTTTGATCATAAGATCAGTGGAAGTTTGAAGAAAGAGCTTGAAATCATTATCCCACAATTGGAGGTCATGAAGAAGCGGAAAATTGAAAGGAAGGACCAATTGTTTTCTGTCTTGGATCAGTTACAGAGTCTTTCGACGGAAATAAGCAGGTCCTTGGAAGATAATCTGTACAAAATGGTGGTGGAAGAGACTGACTTGTCCTTGAAAAGGCTAGAAGAACTACATAGGCAATTGCTTGAATATCAAGATGAGAAGCTTCAAACTTTCGCAAGTGCCCTCTTGGAGATGTGGAATCTGATGGGTACAACTATGGAGGAGCAAAAGAAATATCAGAATGTAACTAGTCGCATAGCTACTTCAAAATATGAAATCACTGAGACTAACATTCTTTCTATAGACCTTCTAAATGATGTTGAAGCTGAAGTGTCAAAGTTGGAGCAGCTCAAGTCAATTAAGCTCAAAGAGATCCTTCTGAAAAAGAAGTTGGAACTGGAGGAGGTATGTAGACAGTCTCATATGGTTACAGAAATATTGAGTGCTGCAGAATACTTGAATGAAGCTATAGAGTCTGGAGCTGTGGACCCTGCATGCCTGTTGGAAAAAATTGAGCTTCAAATCGCAAGAGCAAAAGAGGAAGCTCTAAGCAGGAAAGACATACTAGAAAAGATTGAAAAGTGCTTGTCAAGAAGAATCCTGGCTAGAGGAGATGATAATCGCTATACAGCAGGAAGAGGTGCTCATATTACTTTGAAACGTGCACAGAAAGTGCGTGTTTTAGAATGGTGGAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

306

Amino Acids

35.38

Weight (kDa)

6.01

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP65_ASE1	PF03999	3 - 131	8.9e-17	Microtubule associated protein (MAP65/ASE1 family)
MAP65_ASE1	PF03999	126 - 299	4.4e-25	Microtubule associated protein (MAP65/ASE1 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	322
Acc36I	ACCTGC	1 cut(s)	264
AccI	GTMKAC	2 cut(s)	90, 631
AciI	CCGC	1 cut(s)	202
AclWI	GGATC	2 cut(s)	249, 586
AcuI	CTGAAG	1 cut(s)	567
AfaI	GTAC	2 cut(s)	296, 430
AfiI	CCNNNNNNNGG	2 cut(s)	184, 333
AhlI	ACTAGT	1 cut(s)	467
AjnI	CCWGG	2 cut(s)	105, 819
AjuI	GAANNNNNNNTTGG	2 cut(s)	593, 625
Alw21I	GWGCWC	2 cut(s)	865, 886
Alw26I	GTCTC	3 cut(s)	308, 497, 642
Alw44I	GTGCAC	1 cut(s)	882
AlwI	GGATC	2 cut(s)	249, 586
ApaLI	GTGCAC	1 cut(s)	882
ApeKI	GCWGC	3 cut(s)	55, 565, 665
AspS9I	GGNCC	3 cut(s)	220, 276, 706
AsuHPI	GGTGA	1 cut(s)	122
AvaII	GGWCC	3 cut(s)	220, 276, 706
BaeGI	GKGCMC	2 cut(s)	403, 886
Bbv12I	GWGCWC	2 cut(s)	865, 886
BbvI	GCAGC	3 cut(s)	67, 577, 652
BccI	CCATC	1 cut(s)	418
BciT130I	CCWGG	2 cut(s)	107, 821
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	3 cut(s)	308, 497, 642
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	4 cut(s)	338, 468, 785, 825
BfmI	CTRYAG	4 cut(s)	53, 519, 666, 687
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	3 cut(s)	56, 566, 666
BlsI	GCNGC	3 cut(s)	57, 567, 667
Bme1390I	CCNGG	2 cut(s)	107, 821
Bme18I	GGWCC	3 cut(s)	220, 276, 706
BmgT120I	GGNCC	3 cut(s)	220, 276, 706
BmiI	GGNNCC	1 cut(s)	708
BmrFI	CCNGG	2 cut(s)	107, 821
BpmI	CTGGAG	2 cut(s)	638, 717
BpuEI	CTTGAG	1 cut(s)	554
BsaBI	GATNNNNATC	1 cut(s)	837
BsaJI	CCNNGG	2 cut(s)	106, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 333
Bse1I	ACTGG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	837
BseBI	CCWGG	2 cut(s)	107, 821
BseDI	CCNNGG	2 cut(s)	106, 279
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	2 cut(s)	184, 333
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	1 cut(s)	621
BseRI	GAGGAG	3 cut(s)	455, 635, 843
BseSI	GKGCMC	2 cut(s)	403, 886
BseXI	GCAGC	3 cut(s)	67, 577, 652
BsiHKAI	GWGCWC	2 cut(s)	865, 886
BslI	CCNNNNNNNGG	2 cut(s)	184, 333
BsmAI	GTCTC	3 cut(s)	308, 497, 642
Bsp1286I	GDGCHC	3 cut(s)	403, 865, 886
Bsp1407I	TGTACA	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	130, 138, 241, 591
BspACI	CCGC	1 cut(s)	202
BspCNI	CTCAG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	708
BspMAI	CTGCAG	2 cut(s)	57, 670
BspMI	ACCTGC	1 cut(s)	264
BspPI	GGATC	2 cut(s)	249, 586
BsrGI	TGTACA	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	621
BssECI	CCNNGG	2 cut(s)	106, 279
BssMI	GATC	4 cut(s)	130, 138, 241, 591
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	107, 821
Bst4CI	ACNGT	2 cut(s)	39, 636
Bst6I	CTCTTC	2 cut(s)	306, 850
BstAUI	TGTACA	1 cut(s)	294
BstC8I	GCNNGC	2 cut(s)	60, 715
BstDEI	CTNAG	2 cut(s)	501, 767
BstENI	CCTNNNNNAGG	1 cut(s)	331
BstKTI	GATC	4 cut(s)	133, 141, 244, 594
BstMAI	GTCTC	3 cut(s)	308, 497, 642
BstMBI	GATC	4 cut(s)	130, 138, 241, 591
BstNI	CCWGG	2 cut(s)	107, 821
BstNSI	RCATGY	1 cut(s)	717
BstSCI	CCNGG	2 cut(s)	105, 819
BstSFI	CTRYAG	4 cut(s)	53, 519, 666, 687
BstSLI	GKGCMC	2 cut(s)	403, 886
BstV1I	GCAGC	3 cut(s)	67, 577, 652
BstX2I	RGATCY	1 cut(s)	591
BstYI	RGATCY	1 cut(s)	591
BtsIMutI	CAGTG	3 cut(s)	44, 148, 498
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	60, 715
CciI	TCATGA	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	220, 276, 706
Csp6I	GTAC	2 cut(s)	295, 429
CviAII	CATG	2 cut(s)	193, 714
CviQI	GTAC	2 cut(s)	295, 429
DdeI	CTNAG	2 cut(s)	501, 767
DpnI	GATC	4 cut(s)	132, 140, 243, 593
DpnII	GATC	4 cut(s)	130, 138, 241, 591
DrdI	GACNNNNNNGTC	1 cut(s)	322
DseDI	GACNNNNNNGTC	1 cut(s)	322
Eam1104I	CTCTTC	2 cut(s)	306, 850
EarI	CTCTTC	2 cut(s)	306, 850
Eco130I	CCWWGG	1 cut(s)	279
Eco47I	GGWCC	3 cut(s)	220, 276, 706
Eco57I	CTGAAG	1 cut(s)	567
EcoNI	CCTNNNNNAGG	1 cut(s)	331
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRII	CCWGG	2 cut(s)	105, 819
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	196, 717
FalI	AAGNNNNNCTT	2 cut(s)	579, 611
FatI	CATG	2 cut(s)	192, 713
FauNDI	CATATG	2 cut(s)	95, 642
FbaI	TGATCA	1 cut(s)	130
FblI	GTMKAC	2 cut(s)	90, 631
Fnu4HI	GCNGC	3 cut(s)	56, 566, 666
Fsp4HI	GCNGC	3 cut(s)	56, 566, 666
FspBI	CTAG	4 cut(s)	338, 468, 785, 825
GluI	GCNGC	3 cut(s)	56, 566, 666
GsuI	CTGGAG	2 cut(s)	638, 717
Hin1II	CATG	2 cut(s)	196, 717
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	4 cut(s)	253, 418, 692, 816
HphI	GGTGA	1 cut(s)	122
Hpy166II	GTNNAC	5 cut(s)	25, 91, 632, 706, 884
Hpy188I	TCNGA	3 cut(s)	423, 459, 600
Hpy188III	TCNNGA	4 cut(s)	193, 371, 696, 810
Hpy8I	GTNNAC	5 cut(s)	25, 91, 632, 706, 884
Hpy99I	CGWCG	1 cut(s)	265
HpyAV	CCTTC	3 cut(s)	211, 536, 605
HpyCH4III	ACNGT	2 cut(s)	39, 636
HpyCH4IV	ACGT	1 cut(s)	880
HpyCH4V	TGCA	4 cut(s)	55, 668, 713, 884
HpyF3I	CTNAG	2 cut(s)	501, 767
HpySE526I	ACGT	1 cut(s)	880
Hsp92II	CATG	2 cut(s)	196, 717
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	4 cut(s)	130, 138, 241, 591
LmnI	GCTCC	3 cut(s)	442, 562, 698
Lsp1109I	GCAGC	3 cut(s)	67, 577, 652
MaeI	CTAG	4 cut(s)	338, 468, 785, 825
MaeII	ACGT	1 cut(s)	880
MaeIII	GTNAC	3 cut(s)	246, 463, 646
MalI	GATC	4 cut(s)	132, 140, 243, 593
MboI	GATC	4 cut(s)	130, 138, 241, 591
MboII	GAAGA	7 cut(s)	166, 208, 296, 323, 353, 825, 867
MfeI	CAATTG	4 cut(s)	63, 182, 224, 356
MflI	RGATCY	1 cut(s)	591
MhlI	GDGCHC	3 cut(s)	403, 865, 886
MluCI	AATT	8 cut(s)	63, 70, 182, 207, 224, 356, 576, 729
MlyI	GAGTC	2 cut(s)	262, 701
MmeI	TCCRAC	3 cut(s)	540, 591, 702
MnlI	CCTC	9 cut(s)	22, 181, 413, 433, 613, 616, 751, 821, 851
MseI	TTAA	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	107, 821
MunI	CAATTG	4 cut(s)	63, 182, 224, 356
MvaI	CCWGG	2 cut(s)	107, 821
NdeI	CATATG	2 cut(s)	95, 642
NdeII	GATC	4 cut(s)	130, 138, 241, 591
NlaIII	CATG	2 cut(s)	196, 717
NlaIV	GGNNCC	1 cut(s)	708
NspI	RCATGY	1 cut(s)	717
PaeI	GCATGC	1 cut(s)	717
PagI	TCATGA	1 cut(s)	192
PfeI	GAWTC	2 cut(s)	418, 816
PkrI	GCNGC	3 cut(s)	57, 567, 667
PleI	GAGTC	2 cut(s)	261, 700
PpsI	GAGTC	2 cut(s)	261, 700
PpuMI	RGGWCCY	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	276
Psp6I	CCWGG	2 cut(s)	105, 819
PspGI	CCWGG	2 cut(s)	105, 819
PspN4I	GGNNCC	1 cut(s)	708
PspPI	GGNCC	3 cut(s)	220, 276, 706
PspPPI	RGGWCCY	1 cut(s)	276
PstI	CTGCAG	2 cut(s)	57, 670
PsuI	RGATCY	1 cut(s)	591
RsaI	GTAC	2 cut(s)	296, 430
RsaNI	GTAC	2 cut(s)	295, 429
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	3 cut(s)	56, 566, 666
Sau3AI	GATC	4 cut(s)	130, 138, 241, 591
Sau96I	GGNCC	3 cut(s)	220, 276, 706
SchI	GAGTC	2 cut(s)	262, 701
ScrFI	CCNGG	2 cut(s)	107, 821
SduI	GDGCHC	3 cut(s)	403, 865, 886
SfcI	CTRYAG	4 cut(s)	53, 519, 666, 687
SinI	GGWCC	3 cut(s)	220, 276, 706
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SpeI	ACTAGT	1 cut(s)	467
SphI	GCATGC	1 cut(s)	717
Sse9I	AATT	8 cut(s)	63, 70, 182, 207, 224, 356, 576, 729
SsiI	CCGC	1 cut(s)	202
SspI	AATATT	1 cut(s)	657
SspMI	CTAG	4 cut(s)	338, 468, 785, 825
StyD4I	CCNGG	2 cut(s)	105, 819
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	2 cut(s)	39, 636
TaiI	ACGT	1 cut(s)	883
TaqI	TCGA	1 cut(s)	260
TasI	AATT	8 cut(s)	63, 70, 182, 207, 224, 356, 576, 729
TatI	WGTACW	1 cut(s)	294
TfiI	GAWTC	2 cut(s)	418, 816
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	3 cut(s)	44, 148, 505
TseI	GCWGC	3 cut(s)	55, 565, 665
TspDTI	ATGAA	3 cut(s)	209, 507, 696
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	3 cut(s)	44, 148, 505
VneI	GTGCAC	1 cut(s)	882
VpaK11BI	GGWCC	3 cut(s)	220, 276, 706
XagI	CCTNNNNNAGG	1 cut(s)	331
XceI	RCATGY	1 cut(s)	717
XmiI	GTMKAC	2 cut(s)	90, 631
XspI	CTAG	4 cut(s)	338, 468, 785, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.