Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009633.1

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Forward (+)

7027 .. 9711

Gene Structure 2685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009633.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

atggttaatggagcagcaatggtggaaacattaacttcaaaagccacagcttgggaaaaagaaagaggactagaattcttgtatgatggtagcgaattgctatcaatgctcaaacaatataccatgctaaggcaagagaaagagcaagaaaagcaaagacagagagaccagaagaaatttcaaggacaactgctagctgagaaggaagtaatttatgggtcaaaacacagtgcatctaagagtgggaagaaggtttccgatcgaaaaatgtctcttggtgggccattaatgcgaaaccagaagattgagaaagctgctctacatgtccaccctataaagaagggtgactctctcaatcaaaggagctctcaccagcaatacagtggagtagaagctctatcctttgggaggagaggctcagagttttctggtcattcagtgaagaagcaaccatccactgctgcaaaggcttgtgagatggagttgccattgattcggaaacccctttctcctgtctcttccaaagtgtcatcgaaggccaacattctaaatttccttgaagatcagaaaagacaacagaagaaaaacatcgaagcagtacatctttttaaagaagtccctatcatgtcgagcaaacgaggaagccaatcctttacactttgtgaccgagtcgatgaatatgattgttcggagaataaacccagaagcatcagagcttctgacctgaaagcaacctggcgacccgatttctctctccttcggcatcctccaaccggaaaactggtcatgtttagaccaccttgctgtcgctgtcatatttctggtgctggtttgatcgatcgttcaccggctgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

285

Amino Acids

32.1

Weight (kDa)

9.79

Isoelectric Point (pI)

54.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	51
AcsI	RAATTY	3 cut(s)	74, 176, 550
AdeI	CACNNNGTG	1 cut(s)	662
AfaI	GTAC	1 cut(s)	600
AfiI	CCNNNNNNNGG	4 cut(s)	51, 129, 408, 773
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	3 cut(s)	39, 182, 560
AjnI	CCWGG	1 cut(s)	734
AluBI	AGCT	6 cut(s)	50, 197, 314, 366, 395, 716
AluI	AGCT	6 cut(s)	50, 197, 314, 366, 395, 716
Alw21I	GWGCWC	1 cut(s)	368
Alw26I	GTCTC	3 cut(s)	159, 276, 520
AoxI	GGCC	2 cut(s)	281, 537
ApeKI	GCWGC	3 cut(s)	14, 314, 461
ApoI	RAATTY	3 cut(s)	74, 176, 550
AseI	ATTAAT	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	356, 362, 837
AsuNHI	GCTAGC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	3 cut(s)	26, 301, 448
BccI	CCATC	3 cut(s)	80, 460, 472
BciT130I	CCWGG	1 cut(s)	736
BcoDI	GTCTC	3 cut(s)	159, 276, 520
BfaI	CTAG	2 cut(s)	71, 194
BisI	GCNGC	3 cut(s)	15, 315, 462
BlsI	GCNGC	3 cut(s)	16, 316, 463
Bme1390I	CCNGG	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	281
BmrFI	CCNGG	1 cut(s)	736
BmsI	GCATC	3 cut(s)	242, 717, 772
BmtI	GCTAGC	1 cut(s)	197
Bpu10I	CCTNAGC	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	159
BsaWI	WCCGGW	1 cut(s)	773
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 129, 408, 773
Bse118I	RCCGGY	1 cut(s)	847
Bse1I	ACTGG	1 cut(s)	786
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	736
BseCI	ATCGAT	1 cut(s)	837
BseGI	GGATG	2 cut(s)	452, 763
BseLI	CCNNNNNNNGG	4 cut(s)	51, 129, 408, 773
BseMI	GCAATG	1 cut(s)	24
BseMII	CTCAG	2 cut(s)	189, 432
BseNI	ACTGG	1 cut(s)	786
BseRI	GAGGAG	1 cut(s)	424
BseXI	GCAGC	3 cut(s)	26, 301, 448
Bsh1285I	CGRYCG	2 cut(s)	262, 841
BshFI	GGCC	2 cut(s)	283, 539
BshVI	ATCGAT	1 cut(s)	837
BsiEI	CGRYCG	2 cut(s)	262, 841
BsiHKAI	GWGCWC	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	774, 848
BslFI	GGGAC	1 cut(s)	602
BslI	CCNNNNNNNGG	4 cut(s)	51, 129, 408, 773
BsmAI	GTCTC	3 cut(s)	159, 276, 520
BsmFI	GGGAC	1 cut(s)	602
BsnI	GGCC	2 cut(s)	283, 539
Bso31I	GGTCTC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	4 cut(s)	259, 562, 834, 838
BspANI	GGCC	2 cut(s)	283, 539
BspCNI	CTCAG	2 cut(s)	190, 431
BspDI	ATCGAT	1 cut(s)	837
BspOI	GCTAGC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	159
BsrDI	GCAATG	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	847
BsrI	ACTGG	1 cut(s)	786
BssAI	RCCGGY	1 cut(s)	847
BssMI	GATC	4 cut(s)	259, 562, 834, 838
Bst2UI	CCWGG	1 cut(s)	736
Bst4CI	ACNGT	2 cut(s)	230, 383
Bst6I	CTCTTC	1 cut(s)	523
BstC8I	GCNNGC	1 cut(s)	195
BstDEI	CTNAG	4 cut(s)	128, 198, 237, 418
BstENI	CCTNNNNNAGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	452, 763
BstKTI	GATC	4 cut(s)	262, 565, 837, 841
BstMAI	GTCTC	3 cut(s)	159, 276, 520
BstMBI	GATC	4 cut(s)	259, 562, 834, 838
BstMCI	CGRYCG	2 cut(s)	262, 841
BstMWI	GCNNNNNNNGC	4 cut(s)	106, 151, 289, 467
BstNI	CCWGG	1 cut(s)	736
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	734
BstV1I	GCAGC	3 cut(s)	26, 301, 448
Bsu15I	ATCGAT	1 cut(s)	837
BsuRI	GGCC	2 cut(s)	283, 539
BsuTUI	ATCGAT	1 cut(s)	837
BtsCI	GGATG	2 cut(s)	452, 763
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	4 cut(s)	235, 388, 444, 456
Cac8I	GCNNGC	1 cut(s)	195
Cfr10I	RCCGGY	1 cut(s)	847
Cfr13I	GGNCC	1 cut(s)	281
ClaI	ATCGAT	1 cut(s)	837
Csp6I	GTAC	1 cut(s)	599
CviAII	CATG	4 cut(s)	124, 323, 625, 787
CviQI	GTAC	1 cut(s)	599
DdeI	CTNAG	4 cut(s)	128, 198, 237, 418
DpnI	GATC	4 cut(s)	261, 564, 836, 840
DpnII	GATC	4 cut(s)	259, 562, 834, 838
DraI	TTTAAA	1 cut(s)	610
DraIII	CACNNNGTG	1 cut(s)	662
Eam1104I	CTCTTC	1 cut(s)	523
EarI	CTCTTC	1 cut(s)	523
Ecl136II	GAGCTC	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	368
Eco31I	GGTCTC	1 cut(s)	159
Eco53kI	GAGCTC	1 cut(s)	366
EcoICRI	GAGCTC	1 cut(s)	366
EcoNI	CCTNNNNNAGG	1 cut(s)	406
EcoRI	GAATTC	1 cut(s)	74
EcoRII	CCWGG	1 cut(s)	734
EcoT38I	GRGCYC	1 cut(s)	368
FaeI	CATG	4 cut(s)	127, 326, 628, 790
FaqI	GGGAC	1 cut(s)	602
FatI	CATG	4 cut(s)	123, 322, 624, 786
Fnu4HI	GCNGC	3 cut(s)	15, 315, 462
FokI	GGATG	2 cut(s)	439, 750
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	3 cut(s)	15, 315, 462
FspBI	CTAG	2 cut(s)	71, 194
GluI	GCNGC	3 cut(s)	15, 315, 462
HaeIII	GGCC	2 cut(s)	283, 539
HapII	CCGG	2 cut(s)	774, 848
Hin1II	CATG	4 cut(s)	127, 326, 628, 790
HinfI	GANTC	3 cut(s)	347, 493, 669
HpaII	CCGG	2 cut(s)	774, 848
HphI	GGTGA	3 cut(s)	356, 362, 837
Hpy166II	GTNNAC	2 cut(s)	328, 845
Hpy188I	TCNGA	7 cut(s)	259, 421, 498, 567, 691, 713, 721
Hpy8I	GTNNAC	2 cut(s)	328, 845
HpyAV	CCTTC	5 cut(s)	196, 244, 334, 529, 767
HpyCH4III	ACNGT	2 cut(s)	230, 383
HpyCH4V	TGCA	2 cut(s)	233, 464
HpyF10VI	GCNNNNNNNGC	4 cut(s)	106, 151, 289, 467
HpyF3I	CTNAG	4 cut(s)	128, 198, 237, 418
Hsp92II	CATG	4 cut(s)	127, 326, 628, 790
Kzo9I	GATC	4 cut(s)	259, 562, 834, 838
LmnI	GCTCC	2 cut(s)	11, 363
Lsp1109I	GCAGC	3 cut(s)	26, 301, 448
LweI	GCATC	3 cut(s)	242, 717, 772
MaeI	CTAG	2 cut(s)	71, 194
MaeIII	GTNAC	2 cut(s)	344, 662
MalI	GATC	4 cut(s)	261, 564, 836, 840
MboI	GATC	4 cut(s)	259, 562, 834, 838
MboII	GAAGA	7 cut(s)	184, 259, 313, 454, 510, 572, 592
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	5 cut(s)	74, 95, 176, 210, 550
MlyI	GAGTC	2 cut(s)	341, 678
MmeI	TCCRAC	1 cut(s)	794
MnlI	CCTC	5 cut(s)	59, 402, 407, 632, 777
MseI	TTAA	4 cut(s)	6, 32, 287, 609
MspI	CCGG	2 cut(s)	774, 848
MspR9I	CCNGG	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	736
MwoI	GCNNNNNNNGC	4 cut(s)	106, 151, 289, 467
NdeII	GATC	4 cut(s)	259, 562, 834, 838
NheI	GCTAGC	1 cut(s)	193
NlaIII	CATG	4 cut(s)	127, 326, 628, 790
NmuCI	GTSAC	2 cut(s)	344, 662
NspI	RCATGY	1 cut(s)	326
PciI	ACATGT	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	493
PflFI	GACNNNGTC	1 cut(s)	668
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	3 cut(s)	16, 316, 463
Ple19I	CGATCG	2 cut(s)	262, 841
PleI	GAGTC	2 cut(s)	341, 677
PpsI	GAGTC	2 cut(s)	341, 677
PscI	ACATGT	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	368
Psp6I	CCWGG	1 cut(s)	734
PspGI	CCWGG	1 cut(s)	734
PspPI	GGNCC	1 cut(s)	281
PsyI	GACNNNGTC	1 cut(s)	668
PvuI	CGATCG	2 cut(s)	262, 841
RsaI	GTAC	1 cut(s)	600
RsaNI	GTAC	1 cut(s)	599
SacI	GAGCTC	1 cut(s)	368
SaqAI	TTAA	4 cut(s)	6, 32, 287, 609
SatI	GCNGC	3 cut(s)	15, 315, 462
Sau3AI	GATC	4 cut(s)	259, 562, 834, 838
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	2 cut(s)	341, 678
ScrFI	CCNGG	1 cut(s)	736
SduI	GDGCHC	1 cut(s)	368
SfaNI	GCATC	3 cut(s)	242, 717, 772
Sse9I	AATT	5 cut(s)	74, 95, 176, 210, 550
SspMI	CTAG	2 cut(s)	71, 194
SstI	GAGCTC	1 cut(s)	368
StyD4I	CCNGG	1 cut(s)	734
TaaI	ACNGT	2 cut(s)	230, 383
TaqI	TCGA	6 cut(s)	262, 533, 591, 629, 672, 837
TaqII	GACCGA	1 cut(s)	681
TasI	AATT	5 cut(s)	74, 95, 176, 210, 550
TatI	WGTACW	1 cut(s)	598
TfiI	GAWTC	1 cut(s)	493
Tru1I	TTAA	4 cut(s)	6, 32, 287, 609
Tru9I	TTAA	4 cut(s)	6, 32, 287, 609
TscAI	CASTG	4 cut(s)	235, 388, 444, 463
TseFI	GTSAC	2 cut(s)	344, 662
TseI	GCWGC	3 cut(s)	14, 314, 461
Tsp45I	GTSAC	2 cut(s)	344, 662
TspDTI	ATGAA	1 cut(s)	690
TspRI	CASTG	4 cut(s)	235, 388, 444, 463
Tth111I	GACNNNGTC	1 cut(s)	668
Van91I	CCANNNNNTGG	1 cut(s)	51
VspI	ATTAAT	1 cut(s)	287
XagI	CCTNNNNNAGG	1 cut(s)	406
XapI	RAATTY	3 cut(s)	74, 176, 550
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	380
XspI	CTAG	2 cut(s)	71, 194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.