Rh4DG138200

microtubule binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001938
Physical Location & Seq
Forward (+)
27505244 .. 27505846
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG138200.1

Sequence Viewer

Length: 282 bp
ATGGTGAGGAGGGCTCTGATTCTCAATTCCTTTTCTCTCTCTCTGGTTGAAAAGGTTATCAAGGGTTGCATTAAAGACTGGGAAGCTGTTTCCAAGTGGAATCCATCGAATGGCGGCCTTGATTATTTCCAGTGCATGGAGGTGTTTAGGACAAAAGTTGACGAGGCGGAACAGTGTAAAGCTCAACTGCAGCAAACAATTGCTAATTGTGAAGCAGAGTTTGTATACATATGTGATGTCCTGGGTGAGAAACCACCACATTTTGATCATAAGATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MAP65_ASE1

Protein Analysis

93

Amino Acids

10.64

Weight (kDa)

5.62

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 110, 136
AccI GTMKAC 1 cut(s) 225
AciI CCGC 2 cut(s) 114, 167
AfiI CCNNNNNNNGG 2 cut(s) 110, 136
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 240
AluBI AGCT 2 cut(s) 86, 182
AluI AGCT 2 cut(s) 86, 182
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 190
AsuHPI GGTGA 2 cut(s) 16, 257
BanII GRGCYC 1 cut(s) 16
BbvI GCAGC 1 cut(s) 202
BccI CCATC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 242
BclI TGATCA 1 cut(s) 265
BfmI CTRYAG 1 cut(s) 188
BisI GCNGC 2 cut(s) 115, 191
BlsI GCNGC 2 cut(s) 116, 192
Bme1390I CCNGG 1 cut(s) 242
BmrFI CCNGG 1 cut(s) 242
BmrI ACTGGG 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 88
BplI GAGNNNNNCTC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 136
Bse1I ACTGG 2 cut(s) 83, 130
BseBI CCWGG 1 cut(s) 242
BseDI CCNNGG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 110, 136
BseNI ACTGG 2 cut(s) 83, 130
BseRI GAGGAG 1 cut(s) 22
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 1 cut(s) 117
BslI CCNNNNNNNGG 2 cut(s) 110, 136
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 2 cut(s) 265, 273
BspACI CCGC 2 cut(s) 114, 167
BspANI GGCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 192
BsrI ACTGG 2 cut(s) 83, 130
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 2 cut(s) 265, 273
BssNAI GTATAC 1 cut(s) 226
Bst1107I GTATAC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 242
Bst4CI ACNGT 1 cut(s) 174
BstKTI GATC 2 cut(s) 268, 276
BstMBI GATC 2 cut(s) 265, 273
BstNI CCWGG 1 cut(s) 242
BstSCI CCNGG 1 cut(s) 240
BstSFI CTRYAG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 202
BstZ17I GTATAC 1 cut(s) 226
BsuRI GGCC 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 137, 179
CviAII CATG 1 cut(s) 136
CviJI RGCY 4 cut(s) 14, 86, 117, 182
CviKI_1 RGCY 4 cut(s) 14, 86, 117, 182
DpnI GATC 2 cut(s) 267, 275
DpnII GATC 2 cut(s) 265, 273
EciI GGCGGA 1 cut(s) 182
Eco24I GRGCYC 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 16
FaeI CATG 1 cut(s) 139
FaiI YATR 5 cut(s) 137, 226, 230, 232, 270
FatI CATG 1 cut(s) 135
FauNDI CATATG 1 cut(s) 230
FbaI TGATCA 1 cut(s) 265
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 115, 191
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 2 cut(s) 115, 191
GluI GCNGC 2 cut(s) 115, 191
HaeIII GGCC 1 cut(s) 117
Hin1II CATG 1 cut(s) 139
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 2 cut(s) 19, 100
HphI GGTGA 2 cut(s) 16, 257
Hpy166II GTNNAC 2 cut(s) 160, 226
Hpy188I TCNGA 1 cut(s) 18
Hpy8I GTNNAC 2 cut(s) 160, 226
HpyCH4III ACNGT 1 cut(s) 174
HpyCH4V TGCA 3 cut(s) 69, 135, 190
Hsp92II CATG 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 265
Kzo9I GATC 2 cut(s) 265, 273
LpnPI CCDG 5 cut(s) 29, 64, 143, 227, 254
Lsp1109I GCAGC 1 cut(s) 202
MalI GATC 2 cut(s) 267, 275
MboI GATC 2 cut(s) 265, 273
MfeI CAATTG 1 cut(s) 198
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 3 cut(s) 25, 198, 205
MnlI CCTC 3 cut(s) 3, 133, 157
MseI TTAA 1 cut(s) 72
MslI CAYNNNNRTG 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 198
MvaI CCWGG 1 cut(s) 242
NdeI CATATG 1 cut(s) 230
NdeII GATC 2 cut(s) 265, 273
NlaIII CATG 1 cut(s) 139
PfeI GAWTC 2 cut(s) 19, 100
PflMI CCANNNNNTGG 2 cut(s) 110, 136
PkrI GCNGC 2 cut(s) 116, 192
Psp6I CCWGG 1 cut(s) 240
PspGI CCWGG 1 cut(s) 240
PstI CTGCAG 1 cut(s) 192
RseI CAYNNNNRTG 1 cut(s) 140
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 2 cut(s) 115, 191
Sau3AI GATC 2 cut(s) 265, 273
ScrFI CCNGG 1 cut(s) 242
SduI GDGCHC 1 cut(s) 16
SetI ASST 4 cut(s) 57, 88, 144, 184
SfcI CTRYAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 140
Sse9I AATT 3 cut(s) 25, 198, 205
SsiI CCGC 2 cut(s) 114, 167
StyD4I CCNGG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 107
TasI AATT 3 cut(s) 25, 198, 205
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 2 cut(s) 19, 100
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TscAI CASTG 2 cut(s) 137, 179
TseI GCWGC 1 cut(s) 190
TspRI CASTG 2 cut(s) 137, 179
Van91I CCANNNNNTGG 2 cut(s) 110, 136
XmiI GTMKAC 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.