Rh4DG149200

Microtubule associated protein (MAP65/ASE1 family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001938
Physical Location & Seq
Forward (+)
29823683 .. 29824305
623 bp
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UTR
Exon/CDS
Intron
Rh4DG149200.1

Sequence Viewer

Length: 312 bp
ATGGTGGTGGAAGAGACCGACTTGTCCTTGAAAAGGCTAGAAGAACTACATAGGCAGTTGCTTGAATATCAAGATGAGAAGAGGAACCGTTTGAAGCTGATAATGGACCACATGAGCATGCTAAACTCCCTGTGCTTGGTTCTTGGTATGGATTTTAAACACACAATTCATGAAATCCACCCCACCTTAGATGATCTTAATGGAGAAAAAGACGTAACGAACAGCACAATCGAGGGTTTGGCTAATTCGGTTCAGATATTGAGAGAGGTCAAGATACAGAGATGGCAGAGGGTTAGTATGTCTGTAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MAP65_ASE1

Protein Analysis

103

Amino Acids

12.13

Weight (kDa)

5.92

Isoelectric Point (pI)

44.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAP65_ASE1 PF03999 4 - 98 1.2e-08 Microtubule associated protein (MAP65/ASE1 family)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 33, 136
AgsI TTSAA 3 cut(s) 31, 65, 94
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 1 cut(s) 8
AspS9I GGNCC 1 cut(s) 106
AvaII GGWCC 1 cut(s) 106
BccI CCATC 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 106
BmiI GGNNCC 1 cut(s) 86
BsaI GGTCTC 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 136
BseLI CCNNNNNNNGG 2 cut(s) 33, 136
BslI CCNNNNNNNGG 2 cut(s) 33, 136
BsmAI GTCTC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 193
BspHI TCATGA 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 86
BspTNI GGTCTC 1 cut(s) 8
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 89
Bst6I CTCTTC 2 cut(s) 6, 74
BstC8I GCNNGC 1 cut(s) 119
BstDEI CTNAG 1 cut(s) 187
BstENI CCTNNNNNAGG 1 cut(s) 31
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 119
CciI TCATGA 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 106
CviAII CATG 3 cut(s) 112, 118, 170
CviJI RGCY 3 cut(s) 37, 97, 242
CviKI_1 RGCY 3 cut(s) 37, 97, 242
DdeI CTNAG 1 cut(s) 187
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DraI TTTAAA 1 cut(s) 157
DrdI GACNNNNNNGTC 1 cut(s) 22
DseDI GACNNNNNNGTC 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 6, 74
EarI CTCTTC 2 cut(s) 6, 74
Eco31I GGTCTC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 31
FaeI CATG 3 cut(s) 115, 121, 173
FaiI YATR 6 cut(s) 51, 113, 119, 149, 171, 299
FatI CATG 3 cut(s) 111, 117, 169
FspBI CTAG 1 cut(s) 38
Hin1II CATG 3 cut(s) 115, 121, 173
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 3 cut(s) 71, 170, 271
HpyCH4III ACNGT 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 213
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 115, 121, 173
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 1 cut(s) 143
MaeI CTAG 1 cut(s) 38
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 214
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MboII GAAGA 3 cut(s) 23, 53, 91
MluCI AATT 2 cut(s) 165, 244
MnlI CCTC 4 cut(s) 75, 226, 259, 282
MseI TTAA 2 cut(s) 156, 198
MslI CAYNNNNRTG 1 cut(s) 116
NdeII GATC 1 cut(s) 193
NlaIII CATG 3 cut(s) 115, 121, 173
NlaIV GGNNCC 1 cut(s) 86
NspI RCATGY 1 cut(s) 121
PaeI GCATGC 1 cut(s) 121
PagI TCATGA 1 cut(s) 169
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 106
RseI CAYNNNNRTG 1 cut(s) 116
SaqAI TTAA 2 cut(s) 156, 198
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 106
SetI ASST 4 cut(s) 99, 188, 216, 270
SinI GGWCC 1 cut(s) 106
SmiMI CAYNNNNRTG 1 cut(s) 116
SphI GCATGC 1 cut(s) 121
Sse9I AATT 2 cut(s) 165, 244
SspMI CTAG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 89
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 231
TaqII GACCGA 1 cut(s) 32
TasI AATT 2 cut(s) 165, 244
Tru1I TTAA 2 cut(s) 156, 198
Tru9I TTAA 2 cut(s) 156, 198
TspDTI ATGAA 2 cut(s) 158, 186
VpaK11BI GGWCC 1 cut(s) 106
XagI CCTNNNNNAGG 1 cut(s) 31
XceI RCATGY 1 cut(s) 121
XspI CTAG 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.