Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Reverse (-)

25618080 .. 25654364

Gene Structure 36285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG245600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGCTGCTCCTGAAAGTAAAGTGGCCATCTCTCTATAAAAGGGTGCCTACCTCCAGCCGCAAGTCTGCAGAATGCTCGAAAGAGACTGCCAAATTGCGGCAAAAGAACAATGAAGTTCGGTTTCCTTCATGGGATGACAAGCTAGATGACTTATTAGATCAATTGCTTGTTGTTTTGAAAAAACTGGAGGCCAAAATCGAAGATGTGCACAAGCATTATGATAAGCAATATGCTATTGACGACAGTATACTACGACAAACATTTGATCATAAGATCAGTGGAAGTTTGAAGAAAGAGCTTGAAATCATTATCCCACAATTGGAGGTCATGAAGAAGCGGAAAATTGAAAGGAAGGACCAATTGTTTTCTGTCTTGGATCAGTTACAGAGTCTTTCGACGGAAATAAGCAGGTCCTTGGAAGATAATCTGTACAAAATGGTGGTGGAAGAGACCGACTTGTCCTTGAAAAGGCTAGAAGAACTACATAGGCAATTGCTTGAATATCAAGATGAGAAGAGGAACCGTTTGAAGCTAATAATGGACCACATGAGCATGCTAAACTCCCTGTGCTTGGTTCTTGGTATGGATTTTAAACACACAATTCATGAAATCCACCCCACCTTAGATGATCTTAATGGAGAAAAAGACGTAACGAATAGCACAATCGAGGGTTTGGCTAATTCGGTTCAGTTATTGAGAGAGCTCAAGATACAGAGATGGCAGAGGGTTGAAGCTGAAGTGTCAAAGTTGGAGCAGCTCAAGTCAATTAAGCTCAAAGAGATCCTTCTGAAAAAGAAGTTGGAACTGGAGGAGGATGATAATCGCTATACAGCAAGAAGAGGTGCTCATATTACTTTGAAACGTGCACAGAAAGTGCGTGTTTTAGTAAACAAAATTCCCGGAATGGTGGAAACATTGACTTCAAAAGCCACAGCTTGGGAAAAAGAAAGAGGGCTAGAATTCTTGACACCAGTTAATGATCTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

329

Amino Acids

38.63

Weight (kDa)

8.88

Isoelectric Point (pI)

47.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP65_ASE1	PF03999	50 - 244	1.2e-15	Microtubule associated protein (MAP65/ASE1 family)
MAP65_ASE1	PF03999	271 - 322	8.6e-13	Microtubule associated protein (MAP65/ASE1 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	457
Acc36I	ACCTGC	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	936
AccI	GTMKAC	1 cut(s)	247
AciI	CCGC	3 cut(s)	58, 97, 337
AclWI	GGATC	2 cut(s)	384, 775
AcoI	YGGCCR	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	894, 959
AcuI	CTGAAG	1 cut(s)	756
AfaI	GTAC	1 cut(s)	431
AfiI	CCNNNNNNNGG	5 cut(s)	96, 319, 468, 571, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	782, 814
AluBI	AGCT	8 cut(s)	142, 298, 532, 703, 734, 757, 772, 935
AluI	AGCT	8 cut(s)	142, 298, 532, 703, 734, 757, 772, 935
Alw21I	GWGCWC	4 cut(s)	210, 705, 847, 868
Alw26I	GTCTC	2 cut(s)	77, 443
Alw44I	GTGCAC	2 cut(s)	206, 864
AlwI	GGATC	2 cut(s)	384, 775
AoxI	GGCC	2 cut(s)	23, 189
ApaLI	GTGCAC	2 cut(s)	206, 864
ApeKI	GCWGC	2 cut(s)	4, 754
ApoI	RAATTY	2 cut(s)	894, 959
AspS9I	GGNCC	3 cut(s)	355, 411, 541
AsuC2I	CCSGG	1 cut(s)	900
AvaII	GGWCC	3 cut(s)	355, 411, 541
BaeGI	GKGCMC	2 cut(s)	210, 868
BalI	TGGCCA	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	43
BanII	GRGCYC	1 cut(s)	705
Bbv12I	GWGCWC	4 cut(s)	210, 705, 847, 868
BbvI	GCAGC	1 cut(s)	766
BccI	CCATC	2 cut(s)	34, 711
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BclI	TGATCA	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	900
BcoDI	GTCTC	2 cut(s)	77, 443
BfaI	CTAG	3 cut(s)	143, 473, 956
BfmI	CTRYAG	1 cut(s)	66
BfuAI	ACCTGC	1 cut(s)	399
BisI	GCNGC	4 cut(s)	5, 58, 98, 755
BlsI	GCNGC	4 cut(s)	6, 59, 99, 756
Bme1390I	CCNGG	1 cut(s)	900
Bme18I	GGWCC	3 cut(s)	355, 411, 541
BmgT120I	GGNCC	3 cut(s)	355, 411, 541
BmiI	GGNNCC	2 cut(s)	45, 521
BmrFI	CCNGG	1 cut(s)	900
BpmI	CTGGAG	3 cut(s)	37, 206, 827
BpuEI	CTTGAG	2 cut(s)	689, 743
BpuMI	CCSGG	1 cut(s)	900
BsaBI	GATNNNNATC	1 cut(s)	819
BsaI	GGTCTC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	5 cut(s)	96, 319, 468, 571, 936
Bse1I	ACTGG	3 cut(s)	189, 810, 971
Bse8I	GATNNNNATC	1 cut(s)	819
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	139, 820
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	5 cut(s)	96, 319, 468, 571, 936
BseNI	ACTGG	3 cut(s)	189, 810, 971
BseRI	GAGGAG	1 cut(s)	824
BseSI	GKGCMC	2 cut(s)	210, 868
BseXI	GCAGC	1 cut(s)	766
BshFI	GGCC	2 cut(s)	25, 191
BshNI	GGYRCC	1 cut(s)	43
BsiHKAI	GWGCWC	4 cut(s)	210, 705, 847, 868
BsiSI	CCGG	1 cut(s)	900
BslI	CCNNNNNNNGG	5 cut(s)	96, 319, 468, 571, 936
BsmAI	GTCTC	2 cut(s)	77, 443
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	2 cut(s)	25, 191
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	4 cut(s)	210, 705, 847, 868
Bsp1407I	TGTACA	1 cut(s)	429
Bsp143I	GATC	7 cut(s)	157, 265, 273, 376, 628, 780, 979
BspACI	CCGC	3 cut(s)	58, 97, 337
BspANI	GGCC	2 cut(s)	25, 191
BspHI	TCATGA	2 cut(s)	327, 604
BspLI	GGNNCC	2 cut(s)	45, 521
BspMAI	CTGCAG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	2 cut(s)	384, 775
BspT107I	GGYRCC	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	443
BsrGI	TGTACA	1 cut(s)	429
BsrI	ACTGG	3 cut(s)	189, 810, 971
BssECI	CCNNGG	1 cut(s)	414
BssMI	GATC	7 cut(s)	157, 265, 273, 376, 628, 780, 979
BssNAI	GTATAC	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	414
Bst1107I	GTATAC	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	245, 524
Bst6I	CTCTTC	3 cut(s)	441, 509, 832
BstAUI	TGTACA	1 cut(s)	429
BstC8I	GCNNGC	1 cut(s)	554
BstDEI	CTNAG	1 cut(s)	622
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	2 cut(s)	139, 820
BstKTI	GATC	7 cut(s)	160, 268, 276, 379, 631, 783, 982
BstMAI	GTCTC	2 cut(s)	77, 443
BstMBI	GATC	7 cut(s)	157, 265, 273, 376, 628, 780, 979
BstNSI	RCATGY	1 cut(s)	556
BstSCI	CCNGG	1 cut(s)	898
BstSFI	CTRYAG	1 cut(s)	66
BstSLI	GKGCMC	2 cut(s)	210, 868
BstV1I	GCAGC	1 cut(s)	766
BstX2I	RGATCY	1 cut(s)	780
BstYI	RGATCY	1 cut(s)	780
BstZ17I	GTATAC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	25, 191
BtsCI	GGATG	2 cut(s)	139, 820
BtsIMutI	CAGTG	1 cut(s)	283
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	1 cut(s)	554
CciI	TCATGA	2 cut(s)	327, 604
Cfr13I	GGNCC	3 cut(s)	355, 411, 541
Csp6I	GTAC	1 cut(s)	430
CviAII	CATG	5 cut(s)	129, 328, 547, 553, 605
CviQI	GTAC	1 cut(s)	430
DdeI	CTNAG	1 cut(s)	622
DpnI	GATC	7 cut(s)	159, 267, 275, 378, 630, 782, 981
DpnII	GATC	7 cut(s)	157, 265, 273, 376, 628, 780, 979
DraI	TTTAAA	1 cut(s)	592
DrdI	GACNNNNNNGTC	1 cut(s)	457
DseDI	GACNNNNNNGTC	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	23
Eam1104I	CTCTTC	3 cut(s)	441, 509, 832
EarI	CTCTTC	3 cut(s)	441, 509, 832
Ecl136II	GAGCTC	1 cut(s)	703
Eco130I	CCWWGG	1 cut(s)	414
Eco24I	GRGCYC	1 cut(s)	705
Eco31I	GGTCTC	1 cut(s)	443
Eco47I	GGWCC	3 cut(s)	355, 411, 541
Eco53kI	GAGCTC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	756
EcoICRI	GAGCTC	1 cut(s)	703
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoO109I	RGGNCCY	1 cut(s)	411
EcoRI	GAATTC	1 cut(s)	959
EcoT14I	CCWWGG	1 cut(s)	414
EcoT38I	GRGCYC	1 cut(s)	705
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	5 cut(s)	132, 331, 550, 556, 608
FalI	AAGNNNNNCTT	2 cut(s)	768, 800
FatI	CATG	5 cut(s)	128, 327, 546, 552, 604
FbaI	TGATCA	1 cut(s)	265
FblI	GTMKAC	1 cut(s)	247
Fnu4HI	GCNGC	4 cut(s)	5, 58, 98, 755
FokI	GGATG	2 cut(s)	146, 827
FriOI	GRGCYC	1 cut(s)	705
Fsp4HI	GCNGC	4 cut(s)	5, 58, 98, 755
FspBI	CTAG	3 cut(s)	143, 473, 956
GluI	GCNGC	4 cut(s)	5, 58, 98, 755
GsuI	CTGGAG	3 cut(s)	37, 206, 827
HaeIII	GGCC	2 cut(s)	25, 191
HapII	CCGG	1 cut(s)	900
Hin1II	CATG	5 cut(s)	132, 331, 550, 556, 608
HinfI	GANTC	1 cut(s)	388
HpaII	CCGG	1 cut(s)	900
Hpy166II	GTNNAC	4 cut(s)	208, 248, 866, 889
Hpy188I	TCNGA	1 cut(s)	789
Hpy188III	TCNNGA	6 cut(s)	10, 328, 506, 605, 706, 964
Hpy8I	GTNNAC	4 cut(s)	208, 248, 866, 889
Hpy99I	CGWCG	1 cut(s)	400
HpyAV	CCTTC	3 cut(s)	135, 346, 794
HpyCH4III	ACNGT	2 cut(s)	245, 524
HpyCH4IV	ACGT	2 cut(s)	648, 862
HpyCH4V	TGCA	3 cut(s)	68, 208, 866
HpyF3I	CTNAG	1 cut(s)	622
HpySE526I	ACGT	2 cut(s)	648, 862
Hsp92II	CATG	5 cut(s)	132, 331, 550, 556, 608
Ksp22I	TGATCA	1 cut(s)	265
Kzo9I	GATC	7 cut(s)	157, 265, 273, 376, 628, 780, 979
LmnI	GCTCC	2 cut(s)	12, 751
LpnPI	CCDG	8 cut(s)	23, 67, 170, 394, 578, 791, 913, 984
Lsp1109I	GCAGC	1 cut(s)	766
MaeI	CTAG	3 cut(s)	143, 473, 956
MaeII	ACGT	2 cut(s)	648, 862
MaeIII	GTNAC	2 cut(s)	381, 649
MalI	GATC	7 cut(s)	159, 267, 275, 378, 630, 782, 981
MboI	GATC	7 cut(s)	157, 265, 273, 376, 628, 780, 979
MboII	GAAGA	8 cut(s)	212, 301, 343, 431, 458, 488, 526, 849
MfeI	CAATTG	4 cut(s)	161, 317, 359, 491
MflI	RGATCY	1 cut(s)	780
MhlI	GDGCHC	4 cut(s)	210, 705, 847, 868
MlsI	TGGCCA	1 cut(s)	25
MluNI	TGGCCA	1 cut(s)	25
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	2 cut(s)	729, 780
Mox20I	TGGCCA	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	25
MseI	TTAA	5 cut(s)	591, 633, 768, 975, 988
MslI	CAYNNNNRTG	1 cut(s)	551
Msp20I	TGGCCA	1 cut(s)	25
MspI	CCGG	1 cut(s)	900
MspR9I	CCNGG	1 cut(s)	900
MunI	CAATTG	4 cut(s)	161, 317, 359, 491
Mva1269I	GAATGC	1 cut(s)	77
NciI	CCSGG	1 cut(s)	900
NdeII	GATC	7 cut(s)	157, 265, 273, 376, 628, 780, 979
NlaIII	CATG	5 cut(s)	132, 331, 550, 556, 608
NlaIV	GGNNCC	2 cut(s)	45, 521
NspI	RCATGY	1 cut(s)	556
PaeI	GCATGC	1 cut(s)	556
PagI	TCATGA	2 cut(s)	327, 604
PctI	GAATGC	1 cut(s)	77
PflMI	CCANNNNNTGG	1 cut(s)	936
PfoI	TCCNGGA	1 cut(s)	898
PkrI	GCNGC	4 cut(s)	6, 59, 99, 756
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PpuMI	RGGWCCY	1 cut(s)	411
Psp124BI	GAGCTC	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	411
PspN4I	GGNNCC	2 cut(s)	45, 521
PspPI	GGNCC	3 cut(s)	355, 411, 541
PspPPI	RGGWCCY	1 cut(s)	411
PstI	CTGCAG	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	780
RsaI	GTAC	1 cut(s)	431
RsaNI	GTAC	1 cut(s)	430
RseI	CAYNNNNRTG	1 cut(s)	551
SacI	GAGCTC	1 cut(s)	705
SaqAI	TTAA	5 cut(s)	591, 633, 768, 975, 988
SatI	GCNGC	4 cut(s)	5, 58, 98, 755
Sau3AI	GATC	7 cut(s)	157, 265, 273, 376, 628, 780, 979
Sau96I	GGNCC	3 cut(s)	355, 411, 541
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	900
SduI	GDGCHC	4 cut(s)	210, 705, 847, 868
SfcI	CTRYAG	1 cut(s)	66
SinI	GGWCC	3 cut(s)	355, 411, 541
SmiMI	CAYNNNNRTG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	704, 758
SmoI	CTYRAG	2 cut(s)	704, 758
SphI	GCATGC	1 cut(s)	556
SsiI	CCGC	3 cut(s)	58, 97, 337
SspMI	CTAG	3 cut(s)	143, 473, 956
SstI	GAGCTC	1 cut(s)	705
StyD4I	CCNGG	1 cut(s)	898
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	245, 524
TaiI	ACGT	2 cut(s)	651, 865
TaqI	TCGA	4 cut(s)	77, 198, 395, 666
TaqII	GACCGA	1 cut(s)	467
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	2 cut(s)	60, 100
Tru1I	TTAA	5 cut(s)	591, 633, 768, 975, 988
Tru9I	TTAA	5 cut(s)	591, 633, 768, 975, 988
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	2 cut(s)	4, 754
TspDTI	ATGAA	5 cut(s)	117, 126, 344, 593, 621
TspGWI	ACGGA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	1 cut(s)	936
VneI	GTGCAC	2 cut(s)	206, 864
VpaK11BI	GGWCC	3 cut(s)	355, 411, 541
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	2 cut(s)	894, 959
XceI	RCATGY	1 cut(s)	556
XmiI	GTMKAC	1 cut(s)	247
XspI	CTAG	3 cut(s)	143, 473, 956

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.