Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003160.1

Orthogroup ID

OG0001938

Physical Location & Seq

Genomic Coordinates Reverse (-)

23813 .. 26561

Gene Structure 2749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003160.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atgagcatgataaactccctgtgcttggttcttggtatggattttaaacgcacaattcatgaaatccaccccaccttagatgatcttaatggagaaaaagacttagcgaacagcacaatcgagggtttggctgattcggttcaaatattgagagaggtcaagatacagagatggcagagggttgaagctgaagtgtcaaagttggagcagcagggcaagtcaattaagctcaaagtgatccttctgaaaaagaagttggaactggaggaggtatgtagacagtctcacaaggttacagaaatactgagtgctgcaaaatactcaaatgaagctatagagtctggagctgtggaccctgcatgcctgttggaaaaaattgagcttcaaatcgcaagggcaaaagaggaagctccaagcaggaaagaaatactagaaaagattgaaaagtggttggctgcttgtcaagaagaatcctggctggaggagtacaatagggatgataatcgctatacagcaggaagaggtgctcatattactttgaaacgtgcagagaaagtgtgtgttttagcaaacaaaattcccggtaaagacttggttaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP65_ASE1

Protein Analysis

200

Amino Acids

22.72

Weight (kDa)

6.47

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001938)

Species	Orthologous Gene IDs
malus_domestica	MD02G1203200.v1.1
prunus_persica	Prupe.2G146300_v2.0.a1 Prupe.2G146300_v2.0.a1
pyrus_communis	pycom02g16610
rosa_chinensis	RchiOBHm_Chr1g0350681 RchiOBHm_Chr4g0407401 RchiOBHm_Chr5g0031831 RchiOBHm_Chr5g0072841 RchiOBHm_Chr7g0189031 RchiOBHm_Chr7g0208631
rosa_laevigata	RLG00000028306 RLG00000028307 RLG00000028464
rosa_multiflora	Rmu_sc0001407.1_g000010 Rmu_sc0003160.1_g000008 Rmu_sc0005069.1_g000020 Rmu_sc0009633.1_g000001
rosa_roxburghii	Rroxscaffold_4G00304620 Rroxscaffold_4G00320860 Rroxscaffold_5G00337990
rosa_rugosa	Rorug01G0181900 Rorug01G0182000 Rorug01G0213000
rosa_samantha	Rh1AG227200 Rh1BG196700 Rh1CG212200 Rh1DG224700 Rh2AG170800 Rh2DG176800 Rh4AG144000 Rh4BG240200 Rh4CG150500 Rh4CG150600 Rh4DG138200 Rh4DG149100 Rh4DG149200 Rh5BG497300 Rh5CG245600 Rh5CG521200 Rh5DG227200 Rh6CG175000 Rh7BG451500
rosa_wichuraiana	Rw0G015830 Rw1G019680 Rw5G044300 Rw6G014400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	277
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	576
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	1 cut(s)	25
AgsI	TTSAA	5 cut(s)	143, 185, 386, 443, 541
AjnI	CCWGG	1 cut(s)	473
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	6 cut(s)	188, 229, 332, 347, 382, 410
AluI	AGCT	6 cut(s)	188, 229, 332, 347, 382, 410
Alw21I	GWGCWC	1 cut(s)	529
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	208, 311, 455
ApoI	RAATTY	1 cut(s)	576
AspS9I	GGNCC	1 cut(s)	352
AsuC2I	CCSGG	1 cut(s)	582
AvaII	GGWCC	1 cut(s)	352
Bbv12I	GWGCWC	1 cut(s)	529
BbvI	GCAGC	3 cut(s)	220, 298, 442
BccI	CCATC	1 cut(s)	165
BciT130I	CCWGG	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	582
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	1 cut(s)	431
BfmI	CTRYAG	1 cut(s)	333
BisI	GCNGC	3 cut(s)	209, 312, 456
BlsI	GCNGC	3 cut(s)	210, 313, 457
Bme1390I	CCNGG	2 cut(s)	475, 582
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	354
BmrFI	CCNGG	2 cut(s)	475, 582
BpmI	CTGGAG	3 cut(s)	284, 363, 500
BpuMI	CCSGG	1 cut(s)	582
BsaBI	GATNNNNATC	1 cut(s)	501
Bsc4I	CCNNNNNNNGG	1 cut(s)	25
Bse1I	ACTGG	1 cut(s)	267
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	502
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	296
BseNI	ACTGG	1 cut(s)	267
BseRI	GAGGAG	2 cut(s)	281, 497
BseXI	GCAGC	3 cut(s)	220, 298, 442
BsgI	GTGCAG	1 cut(s)	567
BsiHKAI	GWGCWC	1 cut(s)	529
BsiSI	CCGG	1 cut(s)	582
BslI	CCNNNNNNNGG	1 cut(s)	25
BsmAI	GTCTC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	529
Bsp143I	GATC	2 cut(s)	82, 237
BspCNI	CTCAG	1 cut(s)	297
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	82, 237
Bst2UI	CCWGG	1 cut(s)	475
Bst4CI	ACNGT	1 cut(s)	282
Bst6I	CTCTTC	1 cut(s)	514
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	76, 103, 305
BstF5I	GGATG	1 cut(s)	502
BstKTI	GATC	2 cut(s)	85, 240
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	82, 237
BstNI	CCWGG	1 cut(s)	475
BstNSI	RCATGY	1 cut(s)	363
BstSCI	CCNGG	2 cut(s)	473, 580
BstSFI	CTRYAG	1 cut(s)	333
BstV1I	GCAGC	3 cut(s)	220, 298, 442
BtsCI	GGATG	1 cut(s)	502
Cac8I	GCNNGC	1 cut(s)	361
CciI	TCATGA	1 cut(s)	58
Cfr13I	GGNCC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	3 cut(s)	7, 59, 360
CviJI	RGCY	9 cut(s)	131, 188, 229, 332, 347, 382, 410, 455, 478
CviKI_1	RGCY	9 cut(s)	131, 188, 229, 332, 347, 382, 410, 455, 478
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	3 cut(s)	76, 103, 305
DpnI	GATC	2 cut(s)	84, 239
DpnII	GATC	2 cut(s)	82, 237
DraI	TTTAAA	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	514
EarI	CTCTTC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	210
EcoRII	CCWGG	1 cut(s)	473
FaeI	CATG	3 cut(s)	10, 62, 363
FaiI	YATR	8 cut(s)	8, 38, 60, 274, 335, 361, 510, 531
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FatI	CATG	3 cut(s)	6, 58, 359
FblI	GTMKAC	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	209, 312, 456
FokI	GGATG	1 cut(s)	509
Fsp4HI	GCNGC	3 cut(s)	209, 312, 456
FspBI	CTAG	1 cut(s)	431
GluI	GCNGC	3 cut(s)	209, 312, 456
GsuI	CTGGAG	3 cut(s)	284, 363, 500
HapII	CCGG	1 cut(s)	582
Hin1II	CATG	3 cut(s)	10, 62, 363
HinfI	GANTC	3 cut(s)	134, 338, 470
HpaII	CCGG	1 cut(s)	582
Hpy166II	GTNNAC	2 cut(s)	278, 352
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	4 cut(s)	59, 160, 342, 464
Hpy8I	GTNNAC	2 cut(s)	278, 352
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4IV	ACGT	1 cut(s)	544
HpyCH4V	TGCA	3 cut(s)	314, 359, 548
HpyF3I	CTNAG	3 cut(s)	76, 103, 305
HpySE526I	ACGT	1 cut(s)	544
Hsp92II	CATG	3 cut(s)	10, 62, 363
Kzo9I	GATC	2 cut(s)	82, 237
LmnI	GCTCC	3 cut(s)	205, 344, 415
Lsp1109I	GCAGC	3 cut(s)	220, 298, 442
MaeI	CTAG	1 cut(s)	431
MaeII	ACGT	1 cut(s)	544
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	2 cut(s)	84, 239
MboI	GATC	2 cut(s)	82, 237
MboII	GAAGA	2 cut(s)	479, 531
MhlI	GDGCHC	1 cut(s)	529
MluCI	AATT	4 cut(s)	54, 222, 375, 576
MlyI	GAGTC	1 cut(s)	347
MmeI	TCCRAC	3 cut(s)	183, 237, 348
MnlI	CCTC	8 cut(s)	115, 148, 171, 259, 262, 397, 475, 515
MseI	TTAA	4 cut(s)	45, 87, 225, 597
MspI	CCGG	1 cut(s)	582
MspR9I	CCNGG	2 cut(s)	475, 582
MvaI	CCWGG	1 cut(s)	475
NciI	CCSGG	1 cut(s)	582
NdeII	GATC	2 cut(s)	82, 237
NlaIII	CATG	3 cut(s)	10, 62, 363
NlaIV	GGNNCC	1 cut(s)	354
NspI	RCATGY	1 cut(s)	363
PaeI	GCATGC	1 cut(s)	363
PagI	TCATGA	1 cut(s)	58
PfeI	GAWTC	2 cut(s)	134, 470
PkrI	GCNGC	3 cut(s)	210, 313, 457
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	473
PspGI	CCWGG	1 cut(s)	473
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	352
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
SaqAI	TTAA	4 cut(s)	45, 87, 225, 597
SatI	GCNGC	3 cut(s)	209, 312, 456
Sau3AI	GATC	2 cut(s)	82, 237
Sau96I	GGNCC	1 cut(s)	352
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	2 cut(s)	475, 582
SduI	GDGCHC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	333
SinI	GGWCC	1 cut(s)	352
SphI	GCATGC	1 cut(s)	363
Sse9I	AATT	4 cut(s)	54, 222, 375, 576
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	1 cut(s)	431
StyD4I	CCNGG	2 cut(s)	473, 580
TaaI	ACNGT	1 cut(s)	282
TaiI	ACGT	1 cut(s)	547
TaqI	TCGA	1 cut(s)	120
TasI	AATT	4 cut(s)	54, 222, 375, 576
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	2 cut(s)	134, 470
Tru1I	TTAA	4 cut(s)	45, 87, 225, 597
Tru9I	TTAA	4 cut(s)	45, 87, 225, 597
TseI	GCWGC	3 cut(s)	208, 311, 455
TspDTI	ATGAA	3 cut(s)	47, 75, 342
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	576
XceI	RCATGY	1 cut(s)	363
XmiI	GTMKAC	1 cut(s)	277
XspI	CTAG	1 cut(s)	431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.