Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001224

Physical Location & Seq

Genomic Coordinates Forward (+)

77895850 .. 77896907

Gene Structure 1058 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGATCGGCTTAGATAGAGTGATAGGCACCGGAGTATTCCTACTGATGCCCTTGGTAATCCCAATTGTGGAAAAAATCAGAGAAAAAATATCAAGAAGATGGAACCTAGACAGAGAGAACAGAGTGTACAATGTCAGCATAGATGATCAGAATGGCCTTGAGAGCATAGAGAGTGGTGTAGTGAAAGAGGAAGAAGAAGAGGAACATAGTACAGTGCAGGTTCATAATGAGGTTGGTGAAGTACAGGTTCATCATGGGATTGGTGTTAGAGAGGAGATTGGAGTGACGTTGATGGTGCAAAGGATAGATTTCTGGTTATATTTCCTAGTTTATTTTTTCAGTGCAACAATTGGGCTCGTGTTCTTGAACACCTTGGGACAGATAGCAGAGTCAAGAGGCTCATCTAAGACTTCTTCTCTGGTTTCTTTATCTTCTTCCTTCGGGTTCTTTGGCCGTCTCATGCCTTCACTTCTGGATTATTTCTTCGCAAGAAGCAAGTATATGATTTCAAGGCCTGCATTCCTAATGGCATTAGCGGCACCAATAGCAGGAGTTTTTTTCTTGCTTCTCAACCCAGCTAACGTCTCTCTTATCATCAGTACCGCCATTATAGGAGTGTGCACTGGAGCAATTACTTCTATTGCAGTGTCCATAACCACAGAGCTATTCGGGACCAAAAAATTCTCAATAAATCACAATGTGGTGGTTGCGAATATCTCAATCGGGTCATTTCTTTTTGGCTACTCATCTGCTCTTCTTTATCGTAAGGAAGGAAATGAAGATGGTAGATGCTTGGGAATGGCTTGTTACAGAAGCACCTTCATTATCTGGGGTAGTCTTTCTACGTTAGGGACTGTCCTAGCTTTAACGCTATATGCAAGAACAAGAAAGTTCTACTCCAAAAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

303

Amino Acids

33.62

Weight (kDa)

8.38

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NFD4_C	PF23262	87 - 300	9.9e-103	NFD4, C-terminal domain
MFS_1	PF07690	108 - 297	8.4e-06	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30300
fragaria_vesca	FvH4_2g11110 FvH4_3g40010
malus_domestica	MD03G1058400.v1.1 MD11G1060600.v1.1
pyrus_communis	pycom03g04680 pycom11g05010
rosa_chinensis	RchiOBHm_Chr5g0062631 RchiOBHm_Chr5g0062641 RchiOBHm_Chr5g0072091 RchiOBHm_Chr5g0072101 RchiOBHm_Chr5g0072121 RchiOBHm_Chr5g0072131 RchiOBHm_Chr6g0269351 RchiOBHm_Chr6g0269361
rosa_laevigata	RLG00000013855 RLG00000013856 RLG00000036273 RLG00000036279
rosa_multiflora	Rmu_sc0001152.1_g000010 Rmu_sc0001152.1_g000038 Rmu_sc0003673.1_g000004 Rmu_sc0003673.1_g000010 Rmu_sc0003891.1_g000004 Rmu_sc0010048.1_g000001 Rmu_ssc0000291.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009070 Rroxscaffold_1G00009110 Rroxscaffold_7G00198780 Rroxscaffold_7G00198800
rosa_rugosa	Rorug05G0416400 Rorug05G0416500 Rorug06G0047300
rosa_samantha	Rh5AG411500 Rh5AG472500 Rh5AG472700 Rh5BG425200 Rh5BG492100 Rh5BG492200 Rh5CG449100 Rh5CG515900 Rh5CG516000 Rh5DG439300 Rh5DG504400 Rh5DG504600 Rh6AG167700 Rh6BG172800 Rh6BG173000 Rh6CG166900 Rh6CG167100 Rh6DG158700 Rh6DG158900
rosa_wichuraiana	Rw5G038680 Rw5G038690 Rw5G043890 Rw5G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	208
AccB1I	GGYRCC	2 cut(s)	26, 538
AciI	CCGC	2 cut(s)	536, 603
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	680
AdeI	CACNNNGTG	1 cut(s)	700
AfaI	GTAC	4 cut(s)	128, 211, 243, 601
AfiI	CCNNNNNNNGG	2 cut(s)	67, 548
AgsI	TTSAA	2 cut(s)	367, 510
AluBI	AGCT	3 cut(s)	578, 664, 863
AluI	AGCT	3 cut(s)	578, 664, 863
Alw21I	GWGCWC	1 cut(s)	623
Alw26I	GTCTC	2 cut(s)	461, 589
Alw44I	GTGCAC	1 cut(s)	619
AoxI	GGCC	3 cut(s)	154, 451, 512
ApaLI	GTGCAC	1 cut(s)	619
ApoI	RAATTY	1 cut(s)	680
AspS9I	GGNCC	1 cut(s)	672
AsuHPI	GGTGA	1 cut(s)	248
AvaII	GGWCC	1 cut(s)	672
BaeGI	GKGCMC	1 cut(s)	623
BanI	GGYRCC	2 cut(s)	26, 538
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	623
BccI	CCATC	3 cut(s)	93, 286, 776
BceAI	ACGGC	1 cut(s)	438
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	461, 589
BfaI	CTAG	3 cut(s)	107, 326, 860
BfuAI	ACCTGC	1 cut(s)	208
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
Bme18I	GGWCC	1 cut(s)	672
BmgT120I	GGNCC	1 cut(s)	672
BmiI	GGNNCC	4 cut(s)	28, 104, 540, 673
BmsI	GCATC	2 cut(s)	36, 779
BpmI	CTGGAG	1 cut(s)	645
BpuEI	CTTGAG	1 cut(s)	179
BsaJI	CCNNGG	2 cut(s)	51, 372
BsaWI	WCCGGW	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 548
Bse1I	ACTGG	1 cut(s)	628
BseDI	CCNNGG	2 cut(s)	51, 372
BseLI	CCNNNNNNNGG	2 cut(s)	67, 548
BseNI	ACTGG	1 cut(s)	628
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	623
BseYI	CCCAGC	1 cut(s)	574
BsgI	GTGCAG	1 cut(s)	236
BshFI	GGCC	3 cut(s)	156, 453, 514
BshNI	GGYRCC	2 cut(s)	26, 538
BsiHKAI	GWGCWC	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	3 cut(s)	390, 685, 865
BslI	CCNNNNNNNGG	2 cut(s)	67, 548
BsmAI	GTCTC	2 cut(s)	461, 589
BsmBI	CGTCTC	2 cut(s)	461, 589
BsmFI	GGGAC	3 cut(s)	390, 685, 865
BsmI	GAATGC	1 cut(s)	518
BsnI	GGCC	3 cut(s)	156, 453, 514
Bsp1286I	GDGCHC	2 cut(s)	357, 623
Bsp1407I	TGTACA	1 cut(s)	126
Bsp143I	GATC	3 cut(s)	3, 145, 905
BspACI	CCGC	2 cut(s)	536, 603
BspANI	GGCC	3 cut(s)	156, 453, 514
BspLI	GGNNCC	4 cut(s)	28, 104, 540, 673
BspMI	ACCTGC	1 cut(s)	208
BspQI	GCTCTTC	1 cut(s)	759
BspT107I	GGYRCC	2 cut(s)	26, 538
BsrGI	TGTACA	1 cut(s)	126
BsrI	ACTGG	1 cut(s)	628
BssECI	CCNNGG	2 cut(s)	51, 372
BssMI	GATC	3 cut(s)	3, 145, 905
BssSI	CACGAG	1 cut(s)	356
BssT1I	CCWWGG	2 cut(s)	51, 372
Bst2BI	CACGAG	1 cut(s)	356
Bst4CI	ACNGT	2 cut(s)	214, 856
Bst6I	CTCTTC	2 cut(s)	192, 759
BstAUI	TGTACA	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	516
BstDEI	CTNAG	2 cut(s)	10, 405
BstKTI	GATC	3 cut(s)	6, 148, 908
BstMAI	GTCTC	2 cut(s)	461, 589
BstMBI	GATC	3 cut(s)	3, 145, 905
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 536, 545
BstSLI	GKGCMC	1 cut(s)	623
BsuRI	GGCC	3 cut(s)	156, 453, 514
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	4 cut(s)	219, 346, 621, 651
BveI	ACCTGC	1 cut(s)	208
Cac8I	GCNNGC	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	672
Csp6I	GTAC	4 cut(s)	127, 210, 242, 600
CviAII	CATG	2 cut(s)	254, 460
CviQI	GTAC	4 cut(s)	127, 210, 242, 600
DdeI	CTNAG	2 cut(s)	10, 405
DpnI	GATC	3 cut(s)	5, 147, 907
DpnII	GATC	3 cut(s)	3, 145, 905
DraIII	CACNNNGTG	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	451
Eam1104I	CTCTTC	2 cut(s)	192, 759
EarI	CTCTTC	2 cut(s)	192, 759
Eco130I	CCWWGG	2 cut(s)	51, 372
Eco147I	AGGCCT	1 cut(s)	514
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	672
EcoT14I	CCWWGG	2 cut(s)	51, 372
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	2 cut(s)	51, 372
Esp3I	CGTCTC	2 cut(s)	461, 589
FaeI	CATG	2 cut(s)	257, 463
FaqI	GGGAC	3 cut(s)	390, 685, 865
FatI	CATG	2 cut(s)	253, 459
FbaI	TGATCA	1 cut(s)	145
Fnu4HI	GCNGC	1 cut(s)	537
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	3 cut(s)	107, 326, 860
GluI	GCNGC	1 cut(s)	537
GsaI	CCCAGC	1 cut(s)	578
GsuI	CTGGAG	1 cut(s)	645
HaeIII	GGCC	3 cut(s)	156, 453, 514
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	2 cut(s)	257, 463
HinfI	GANTC	1 cut(s)	389
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	2 cut(s)	127, 621
Hpy188I	TCNGA	2 cut(s)	80, 150
Hpy188III	TCNNGA	5 cut(s)	93, 364, 393, 473, 670
Hpy8I	GTNNAC	2 cut(s)	127, 621
HpyAV	CCTTC	4 cut(s)	448, 474, 764, 829
HpyCH4III	ACNGT	2 cut(s)	214, 856
HpyCH4IV	ACGT	3 cut(s)	287, 582, 845
HpyCH4V	TGCA	7 cut(s)	217, 298, 344, 518, 621, 644, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 536, 545
HpyF3I	CTNAG	2 cut(s)	10, 405
HpySE526I	ACGT	3 cut(s)	287, 582, 845
Hsp92II	CATG	2 cut(s)	257, 463
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	3, 145, 905
LguI	GCTCTTC	1 cut(s)	759
LmnI	GCTCC	1 cut(s)	626
LweI	GCATC	2 cut(s)	36, 779
MaeI	CTAG	3 cut(s)	107, 326, 860
MaeII	ACGT	3 cut(s)	287, 582, 845
MaeIII	GTNAC	2 cut(s)	283, 806
MalI	GATC	3 cut(s)	5, 147, 907
MboI	GATC	3 cut(s)	3, 145, 905
MfeI	CAATTG	2 cut(s)	63, 348
MhlI	GDGCHC	2 cut(s)	357, 623
MluCI	AATT	4 cut(s)	63, 348, 630, 680
MlyI	GAGTC	1 cut(s)	398
MnlI	CCTC	5 cut(s)	181, 193, 223, 265, 389
MseI	TTAA	1 cut(s)	866
MspI	CCGG	1 cut(s)	30
MunI	CAATTG	2 cut(s)	63, 348
Mva1269I	GAATGC	1 cut(s)	518
MwoI	GCNNNNNNNGC	3 cut(s)	162, 536, 545
NdeII	GATC	3 cut(s)	3, 145, 905
NlaIII	CATG	2 cut(s)	257, 463
NlaIV	GGNNCC	4 cut(s)	28, 104, 540, 673
NmuCI	GTSAC	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	514
PciSI	GCTCTTC	1 cut(s)	759
PctI	GAATGC	1 cut(s)	518
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	1 cut(s)	397
PpsI	GAGTC	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	574
PspN4I	GGNNCC	4 cut(s)	28, 104, 540, 673
PspPI	GGNCC	1 cut(s)	672
PsrI	GAACNNNNNNTAC	2 cut(s)	110, 142
RsaI	GTAC	4 cut(s)	128, 211, 243, 601
RsaNI	GTAC	4 cut(s)	127, 210, 242, 600
SapI	GCTCTTC	1 cut(s)	759
SaqAI	TTAA	1 cut(s)	866
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	3 cut(s)	3, 145, 905
Sau96I	GGNCC	1 cut(s)	672
SchI	GAGTC	1 cut(s)	398
SduI	GDGCHC	2 cut(s)	357, 623
SfaNI	GCATC	2 cut(s)	36, 779
SinI	GGWCC	1 cut(s)	672
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	4 cut(s)	63, 348, 630, 680
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	2 cut(s)	536, 603
SspMI	CTAG	3 cut(s)	107, 326, 860
StuI	AGGCCT	1 cut(s)	514
StyI	CCWWGG	2 cut(s)	51, 372
TaaI	ACNGT	2 cut(s)	214, 856
TaiI	ACGT	3 cut(s)	290, 585, 848
TasI	AATT	4 cut(s)	63, 348, 630, 680
TatI	WGTACW	3 cut(s)	126, 209, 241
TauI	GCSGC	1 cut(s)	539
Tru1I	TTAA	1 cut(s)	866
Tru9I	TTAA	1 cut(s)	866
TscAI	CASTG	4 cut(s)	219, 346, 628, 651
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	4 cut(s)	212, 239, 792, 811
TspRI	CASTG	4 cut(s)	219, 346, 628, 651
VneI	GTGCAC	1 cut(s)	619
VpaK11BI	GGWCC	1 cut(s)	672
XapI	RAATTY	1 cut(s)	680
XspI	CTAG	3 cut(s)	107, 326, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.