Rmu_sc0001152.1_g000038

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001152.1
Physical Location & Seq
Forward (+)
145599 .. 147343
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001152.1_g000038.1.cds

Sequence Viewer

Length: 1605 bp
atgtcttcctcatcaaatgctttccaatggttaagcctagtggccatcatatggcttcagtccataaatggaacaaacaccaccttccctgcttactcatcccaactcaagaacactctatccttgtcccaactacaaatcaacaatctcgtctttgcctccgacgcagggaagctctttggttggttttccggcattgctgctatttaccttcctctttggcgagtcctcatgatcggctcacttctcgggttgattggctacggcgtccaatttctattcgtaacagacaaaatctcatctccagcatattggcaaatattcttgctcaccatggtggccggaaatagcgtctgttggatcaacaccgtttgctatgttgttagtattcgaaactttccgtttcaccaacaggttgctgtgggactaacaacaagttatcaaggattgagtgcaaaaatctacacagatattgttagtactgctttttcttcgtcacctcataaaagagcacaggcctatcttcttctaaactctctcctgcctttactagtctgtgttgtagtggcaccattggtgagaaacattgatgtgggaacaggggagccgagaaacatggcagcggggttcaatttgatgtttgtgataaccattgccaccggaatctatgccgtcatcaccagtttaggatcaatgatcggcttagacagaatgataggtaccggagtgttcctactgatccccttggtaatcccaattgtagtaaaaatcagagaaaaaatatcaagaagatggagcctagacagagagaacagagtgtacaatgtcagcatagatgatcagaatggccttgagagcatagaaagtggtgtagttaaacaggaagaagaagaggaacatagtacagtgcaggttcatgatgaggttggtgaggtacaggttaatcatgggattggtgttagagaggagattggagtgaagttgatggtgcaaaggatagatttctggttatatttcctagtgtattttttcagtgcaacaattgggcttgtgttcttgaacaccttgggacagatagcggagtcaagaggctcatctaagacttcttctctggtttctttatcctcttccttcgggttctttggccgtctcatgccttcacttctggactatttcttctcaagaagcaagtatatgatttcaaggcctgcattcctaatggcattagcagcaccaatggcaggagttttttttttgcttctcaacccagctaacgtctctcttatcatcagtaccgccattataggagtgtgcactggagcaattacttctattgcagtgtccataaccaaagaactattcgggaccaagaaattctcaataaatcacaatgtggtggttgcgaatatctcagttgggtcgtttctttttggctactcatctgctcttctttatcgcaaggaaggagatgaagatggtagctgcttgggaatggcttgttacagaagcaccttcattatctggggtagtctctgtacgttagggactgtcctagctttaacgctttatgcaagaacaagaaagttctactccaaaagatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

534

Amino Acids

58.66

Weight (kDa)

9.02

Isoelectric Point (pI)

40.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 901
Acc65I GGTACC 1 cut(s) 719
AccB1I GGYRCC 2 cut(s) 568, 719
AccB7I CCANNNNNTGG 1 cut(s) 51
AciI CCGC 3 cut(s) 623, 1079, 1296
AclWI GGATC 3 cut(s) 368, 697, 733
AcoI YGGCCR 3 cut(s) 42, 339, 1144
AcsI RAATTY 1 cut(s) 1373
AcuI CTGAAG 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 1393
AfaI GTAC 7 cut(s) 481, 721, 821, 904, 936, 1294, 1537
AfiI CCNNNNNNNGG 3 cut(s) 51, 168, 1241
AgsI TTSAA 3 cut(s) 631, 1060, 1203
AhlI ACTAGT 1 cut(s) 550
AjuI GAANNNNNNNTTGG 2 cut(s) 1343, 1375
AleI CACNNNNGTG 1 cut(s) 335
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 4 cut(s) 175, 1271, 1482, 1556
AluI AGCT 4 cut(s) 175, 1271, 1482, 1556
Alw21I GWGCWC 2 cut(s) 514, 1316
Alw26I GTCTC 3 cut(s) 1154, 1282, 1535
Alw44I GTGCAC 1 cut(s) 1312
AlwI GGATC 3 cut(s) 368, 697, 733
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 6 cut(s) 42, 339, 516, 847, 1144, 1205
ApaLI GTGCAC 1 cut(s) 1312
ApeKI GCWGC 4 cut(s) 200, 620, 1229, 1482
ApoI RAATTY 1 cut(s) 1373
Asp718I GGTACC 1 cut(s) 719
AspS9I GGNCC 1 cut(s) 1365
AsuHPI GGTGA 6 cut(s) 322, 398, 489, 589, 670, 941
AsuII TTCGAA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 1365
BaeGI GKGCMC 1 cut(s) 1316
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 2 cut(s) 568, 719
Bbv12I GWGCWC 2 cut(s) 514, 1316
BbvI GCAGC 4 cut(s) 187, 632, 1241, 1469
BccI CCATC 4 cut(s) 53, 786, 979, 1469
BceAI ACGGC 3 cut(s) 280, 656, 1131
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 3 cut(s) 1154, 1282, 1535
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 5 cut(s) 38, 551, 800, 1019, 1553
BfuAI ACCTGC 1 cut(s) 901
BisI GCNGC 4 cut(s) 201, 621, 1230, 1483
BlsI GCNGC 4 cut(s) 202, 622, 1231, 1484
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 1365
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 1365
BmiI GGNNCC 5 cut(s) 570, 606, 721, 797, 1366
BpmI CTGGAG 2 cut(s) 288, 1338
Bpu14I TTCGAA 1 cut(s) 391
BpuEI CTTGAG 3 cut(s) 92, 872, 1165
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 333, 744, 1065
BsaWI WCCGGW 2 cut(s) 659, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 168, 1241
Bse1I ACTGG 2 cut(s) 681, 1321
Bse3DI GCAATG 2 cut(s) 195, 651
BseDI CCNNGG 3 cut(s) 333, 744, 1065
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 3 cut(s) 51, 168, 1241
BseMI GCAATG 2 cut(s) 195, 651
BseMII CTCAG 1 cut(s) 1425
BseNI ACTGG 2 cut(s) 681, 1321
BseRI GAGGAG 1 cut(s) 980
BseSI GKGCMC 1 cut(s) 1316
BseXI GCAGC 4 cut(s) 187, 632, 1241, 1469
BseYI CCCAGC 1 cut(s) 1267
BsgI GTGCAG 1 cut(s) 929
BshFI GGCC 6 cut(s) 44, 341, 518, 849, 1146, 1207
BshNI GGYRCC 2 cut(s) 568, 719
BsiHKAI GWGCWC 2 cut(s) 514, 1316
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 4 cut(s) 192, 342, 660, 723
BslFI GGGAC 5 cut(s) 112, 438, 1083, 1378, 1558
BslI CCNNNNNNNGG 3 cut(s) 51, 168, 1241
BsmAI GTCTC 3 cut(s) 1154, 1282, 1535
BsmBI CGTCTC 2 cut(s) 1154, 1282
BsmFI GGGAC 5 cut(s) 112, 438, 1083, 1378, 1558
BsmI GAATGC 1 cut(s) 1211
BsnI GGCC 6 cut(s) 44, 341, 518, 849, 1146, 1207
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 391
Bsp1286I GDGCHC 2 cut(s) 514, 1316
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1598
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 3 cut(s) 623, 1079, 1296
BspANI GGCC 6 cut(s) 44, 341, 518, 849, 1146, 1207
BspCNI CTCAG 1 cut(s) 1424
BspHI TCATGA 2 cut(s) 231, 916
BspLI GGNNCC 5 cut(s) 570, 606, 721, 797, 1366
BspMI ACCTGC 1 cut(s) 901
BspPI GGATC 3 cut(s) 368, 697, 733
BspQI GCTCTTC 1 cut(s) 1452
BspT104I TTCGAA 1 cut(s) 391
BspT107I GGYRCC 2 cut(s) 568, 719
BsrDI GCAATG 2 cut(s) 195, 651
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 2 cut(s) 681, 1321
BssECI CCNNGG 3 cut(s) 333, 744, 1065
BssMI GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1598
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 3 cut(s) 333, 744, 1065
Bst4CI ACNGT 3 cut(s) 370, 907, 1549
Bst6I CTCTTC 3 cut(s) 885, 1132, 1452
BstACI GRCGYC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 819
BstBI TTCGAA 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 1209
BstDEI CTNAG 3 cut(s) 703, 1098, 1411
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 7 cut(s) 237, 363, 692, 699, 741, 841, 1601
BstMAI GTCTC 3 cut(s) 1154, 1282, 1535
BstMBI GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1598
BstMWI GCNNNNNNNGC 4 cut(s) 164, 855, 1229, 1238
BstSLI GKGCMC 1 cut(s) 1316
BstV1I GCAGC 4 cut(s) 187, 632, 1241, 1469
BstXI CCANNNNNNTGG 1 cut(s) 312
BsuRI GGCC 6 cut(s) 44, 341, 518, 849, 1146, 1207
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 98
BtsI GCAGTG 1 cut(s) 1344
BtsIMutI CAGTG 4 cut(s) 912, 1039, 1314, 1344
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 1 cut(s) 1209
CciI TCATGA 2 cut(s) 231, 916
Cfr13I GGNCC 1 cut(s) 1365
CseI GACGC 3 cut(s) 173, 256, 340
Csp6I GTAC 7 cut(s) 480, 720, 820, 903, 935, 1293, 1536
CviAII CATG 6 cut(s) 232, 334, 616, 917, 947, 1153
CviQI GTAC 7 cut(s) 480, 720, 820, 903, 935, 1293, 1536
DdeI CTNAG 3 cut(s) 703, 1098, 1411
DpnI GATC 7 cut(s) 236, 362, 691, 698, 740, 840, 1600
DpnII GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1598
DraIII CACNNNGTG 1 cut(s) 1393
EaeI YGGCCR 3 cut(s) 42, 339, 1144
Eam1104I CTCTTC 3 cut(s) 885, 1132, 1452
EarI CTCTTC 3 cut(s) 885, 1132, 1452
Eco130I CCWWGG 3 cut(s) 333, 744, 1065
Eco147I AGGCCT 2 cut(s) 518, 1207
Eco47I GGWCC 1 cut(s) 1365
Eco57I CTGAAG 1 cut(s) 41
Eco88I CYCGRG 1 cut(s) 248
EcoT14I CCWWGG 3 cut(s) 333, 744, 1065
ErhI CCWWGG 3 cut(s) 333, 744, 1065
Esp3I CGTCTC 2 cut(s) 1154, 1282
FaeI CATG 6 cut(s) 235, 337, 619, 920, 950, 1156
FaqI GGGAC 5 cut(s) 112, 438, 1083, 1378, 1558
FatI CATG 6 cut(s) 231, 333, 615, 916, 946, 1152
FauI CCCGC 1 cut(s) 616
FauNDI CATATG 1 cut(s) 50
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 201, 621, 1230, 1483
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 4 cut(s) 201, 621, 1230, 1483
FspBI CTAG 5 cut(s) 38, 551, 800, 1019, 1553
GluI GCNGC 4 cut(s) 201, 621, 1230, 1483
GsaI CCCAGC 1 cut(s) 1271
GsuI CTGGAG 2 cut(s) 288, 1338
HaeIII GGCC 6 cut(s) 44, 341, 518, 849, 1146, 1207
HapII CCGG 4 cut(s) 192, 342, 660, 723
HgaI GACGC 3 cut(s) 173, 256, 340
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 6 cut(s) 235, 337, 619, 920, 950, 1156
HinfI GANTC 3 cut(s) 225, 663, 1082
HpaII CCGG 4 cut(s) 192, 342, 660, 723
HphI GGTGA 6 cut(s) 322, 398, 489, 589, 670, 941
Hpy166II GTNNAC 2 cut(s) 820, 1314
Hpy188I TCNGA 3 cut(s) 163, 773, 843
Hpy188III TCNNGA 9 cut(s) 109, 232, 786, 917, 1057, 1086, 1166, 1182, 1363
Hpy8I GTNNAC 2 cut(s) 820, 1314
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 6 cut(s) 94, 221, 1141, 1167, 1457, 1522
HpyCH4III ACNGT 3 cut(s) 370, 907, 1549
HpyCH4IV ACGT 2 cut(s) 1275, 1538
HpyCH4V TGCA 8 cut(s) 455, 910, 991, 1037, 1211, 1314, 1337, 1571
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 855, 1229, 1238
HpyF3I CTNAG 3 cut(s) 703, 1098, 1411
HpySE526I ACGT 2 cut(s) 1275, 1538
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 6 cut(s) 235, 337, 619, 920, 950, 1156
KpnI GGTACC 1 cut(s) 723
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1598
LguI GCTCTTC 1 cut(s) 1452
LmnI GCTCC 3 cut(s) 604, 795, 1319
Lsp1109I GCAGC 4 cut(s) 187, 632, 1241, 1469
MaeI CTAG 5 cut(s) 38, 551, 800, 1019, 1553
MaeII ACGT 2 cut(s) 1275, 1538
MaeIII GTNAC 3 cut(s) 283, 495, 1499
MalI GATC 7 cut(s) 236, 362, 691, 698, 740, 840, 1600
MboI GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1598
MfeI CAATTG 2 cut(s) 756, 1041
MhlI GDGCHC 2 cut(s) 514, 1316
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 6 cut(s) 272, 631, 756, 1041, 1323, 1373
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 2 cut(s) 234, 1091
MmeI TCCRAC 2 cut(s) 186, 338
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 4 cut(s) 32, 876, 942, 1559
MslI CAYNNNNRTG 2 cut(s) 335, 590
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 4 cut(s) 192, 342, 660, 723
MunI CAATTG 2 cut(s) 756, 1041
Mva1269I GAATGC 1 cut(s) 1211
MwoI GCNNNNNNNGC 4 cut(s) 164, 855, 1229, 1238
NcoI CCATGG 1 cut(s) 333
NdeI CATATG 1 cut(s) 50
NdeII GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1598
NlaIII CATG 6 cut(s) 235, 337, 619, 920, 950, 1156
NlaIV GGNNCC 5 cut(s) 570, 606, 721, 797, 1366
NmeAIII GCCGAG 1 cut(s) 633
NmuCI GTSAC 1 cut(s) 495
NspV TTCGAA 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 335
PagI TCATGA 2 cut(s) 231, 916
PceI AGGCCT 2 cut(s) 518, 1207
PciSI GCTCTTC 1 cut(s) 1452
PctI GAATGC 1 cut(s) 1211
PfeI GAWTC 1 cut(s) 663
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 4 cut(s) 202, 622, 1231, 1484
PleI GAGTC 2 cut(s) 233, 1090
PpsI GAGTC 2 cut(s) 233, 1090
PspFI CCCAGC 1 cut(s) 1267
PspN4I GGNNCC 5 cut(s) 570, 606, 721, 797, 1366
PspPI GGNCC 1 cut(s) 1365
PsrI GAACNNNNNNTAC 2 cut(s) 803, 835
RsaI GTAC 7 cut(s) 481, 721, 821, 904, 936, 1294, 1537
RsaNI GTAC 7 cut(s) 480, 720, 820, 903, 935, 1293, 1536
RseI CAYNNNNRTG 2 cut(s) 335, 590
SapI GCTCTTC 1 cut(s) 1452
SaqAI TTAA 4 cut(s) 32, 876, 942, 1559
SatI GCNGC 4 cut(s) 201, 621, 1230, 1483
Sau3AI GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1598
Sau96I GGNCC 1 cut(s) 1365
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 2 cut(s) 234, 1091
SduI GDGCHC 2 cut(s) 514, 1316
SfuI TTCGAA 1 cut(s) 391
SinI GGWCC 1 cut(s) 1365
SmiMI CAYNNNNRTG 2 cut(s) 335, 590
SmlI CTYRAG 3 cut(s) 107, 851, 1180
SmoI CTYRAG 3 cut(s) 107, 851, 1180
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 6 cut(s) 272, 631, 756, 1041, 1323, 1373
SseBI AGGCCT 2 cut(s) 518, 1207
SsiI CCGC 3 cut(s) 623, 1079, 1296
SspI AATATT 1 cut(s) 321
SspMI CTAG 5 cut(s) 38, 551, 800, 1019, 1553
StuI AGGCCT 2 cut(s) 518, 1207
StyI CCWWGG 3 cut(s) 333, 744, 1065
TaaI ACNGT 3 cut(s) 370, 907, 1549
TaiI ACGT 2 cut(s) 1278, 1541
TaqI TCGA 1 cut(s) 391
TasI AATT 6 cut(s) 272, 631, 756, 1041, 1323, 1373
TatI WGTACW 3 cut(s) 479, 819, 902
TfiI GAWTC 1 cut(s) 663
Tru1I TTAA 4 cut(s) 32, 876, 942, 1559
Tru9I TTAA 4 cut(s) 32, 876, 942, 1559
TscAI CASTG 4 cut(s) 912, 1039, 1321, 1344
TseFI GTSAC 1 cut(s) 495
TseI GCWGC 4 cut(s) 200, 620, 1229, 1482
Tsp45I GTSAC 1 cut(s) 495
TspDTI ATGAA 3 cut(s) 905, 1485, 1504
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 4 cut(s) 912, 1039, 1321, 1344
Van91I CCANNNNNTGG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 1312
VpaK11BI GGWCC 1 cut(s) 1365
XapI RAATTY 1 cut(s) 1373
XspI CTAG 5 cut(s) 38, 551, 800, 1019, 1553
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.