Rmu_ssc0000291.1_g000009

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000291.1
Physical Location & Seq
Reverse (-)
39262 .. 41592
2331 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000291.1_g000009.1.cds

Sequence Viewer

Length: 1635 bp
atgtcttcatcctcatcaaaagctttccaatggctaagccttgtgggcatcatatggcttcaatccataaacggaacaaacaccaccttccctgcttactcatcccaactcaagagcactctctccatctcccaactacaaatcaacaatctcgtcttcgcctccgacgcagggaaactctttggttggttttccggcattgctgctatttaccttcctctctggctagtcctcatgatcggctcacttctcgggttgattggctacggtgtccaatttctattcgtaactaaccaaatctcatctccatcatattggcaaatattcttgctcaccatggtggccggaaatagtgtctgttggatcaacaccgtttgctatgtagtttgcattcgaaactttccgtttcaccaacaggttgctgtgggactaacaacaagttaccaaggattgagtgcaaaaatctacacagatattgttagtgctgctttttcttcttcacctcataagagagccaaggcctatcttcttctaaactctctcctgcctttacttgtctgtgttgtagtggcaccatttgtgagagacattgatgtgggaacaggggagcccagaaaaatggcagcggggttcaaatcaatgtttgtggtaacaattgccaccggaatctatgccgtgatcaccagtttaggatcaatgtcgtctatccacttatcgccattgcagggtgtgataggtaccgtattgttcctactgatccccttggtcatcccaattgtggaaaaaatcggagaaacattatcaagaaggtggagcctagacagagagaacagagtgcatgacttcagcatagaagatcagaaaggccttgagagcatagagagtggtgtagtgaaagaggaagaagaagaggaacatagtacagtgcatgttcataatgaggttggtgaagttcaggttcatcatgggattggtgttagagaggagattggagtgaagttgatggtgaaaaggatagatttctggttatatttcctagtgtatattttcagtgcaacaattgggcttgtgttcttgaacaccttgggacagatagcagagtcaagaggctcatctaagacttcttctctggtttctttatcttcttcatttgggttctttggccgtctcatgacttcacttctggactatttcttctcaagaagcaagtacatgatttcaaggcctgcattcctagtgacattagcggcaccaatagcaggagttttcttcttgcttctcaacccagctaacgtctcccttatcatcagtaccgccattataggagtgtgcactggagcaattacttctattgcagtgtccataaccacagagctattcgggaccaagaatttctcaataaatcagaatgtggtggttgtgaatatctcaatcgggtcgtttctttttggctactcatctgctcttatttatcgcaaggaaggaaatgaagatgggggcaataaattcagacgccggaatccggtcactagtccggtagctggattcgggattccggtcaccgatcaccagattcaggtcaccggtcgccggagtccgtcactggtcaccggagtccggcaaggtctcagctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

544

Amino Acids

59.33

Weight (kDa)

9.05

Isoelectric Point (pI)

43.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 737
AccB1I GGYRCC 3 cut(s) 571, 737, 1249
AciI CCGC 3 cut(s) 626, 1247, 1314
AclWI GGATC 3 cut(s) 371, 700, 751
AcoI YGGCCR 2 cut(s) 342, 1162
AcsI RAATTY 2 cut(s) 1390, 1505
AcuI CTGAAG 1 cut(s) 829
AcyI GRCGYC 1 cut(s) 1513
AfaI GTAC 4 cut(s) 739, 922, 1211, 1312
AfiI CCNNNNNNNGG 9 cut(s) 171, 725, 778, 1259, 1522, 1541, 1576, 1590, 1617
AgeI ACCGGT 1 cut(s) 1583
AgsI TTSAA 4 cut(s) 62, 634, 1078, 1221
AhlI ACTAGT 1 cut(s) 1529
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 5 cut(s) 23, 1289, 1375, 1541, 1632
AluI AGCT 5 cut(s) 23, 1289, 1375, 1541, 1632
Alw21I GWGCWC 2 cut(s) 119, 1334
Alw26I GTCTC 4 cut(s) 579, 1172, 1300, 1631
Alw44I GTGCAC 1 cut(s) 1330
AlwI GGATC 3 cut(s) 371, 700, 751
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 5 cut(s) 342, 519, 865, 1162, 1223
ApaLI GTGCAC 1 cut(s) 1330
ApeKI GCWGC 3 cut(s) 203, 485, 623
ApoI RAATTY 2 cut(s) 1390, 1505
AsiGI ACCGGT 1 cut(s) 1583
Asp718I GGTACC 1 cut(s) 737
AspS9I GGNCC 1 cut(s) 1383
AsuII TTCGAA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 1383
BaeGI GKGCMC 1 cut(s) 1334
BanI GGYRCC 3 cut(s) 571, 737, 1249
BanII GRGCYC 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 119, 1334
BbvI GCAGC 3 cut(s) 190, 472, 635
BccI CCATC 4 cut(s) 134, 316, 997, 1487
BceAI ACGGC 2 cut(s) 659, 1149
BclI TGATCA 1 cut(s) 678
BcoDI GTCTC 4 cut(s) 579, 1172, 1300, 1631
BcuI ACTAGT 1 cut(s) 1529
BfaI CTAG 5 cut(s) 227, 818, 1037, 1235, 1530
BglI GCCNNNNNGGC 1 cut(s) 45
BisI GCNGC 4 cut(s) 204, 486, 624, 1248
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 4 cut(s) 205, 487, 625, 1249
Bme18I GGWCC 1 cut(s) 1383
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 1383
BmiI GGNNCC 6 cut(s) 573, 609, 739, 815, 1251, 1384
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 1356
Bpu1102I GCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 394
BpuEI CTTGAG 3 cut(s) 95, 890, 1183
BsaHI GRCGYC 1 cut(s) 1513
BsaI GGTCTC 1 cut(s) 1631
BsaJI CCNNGG 5 cut(s) 336, 445, 516, 762, 1083
BsaWI WCCGGW 6 cut(s) 662, 1522, 1534, 1555, 1583, 1610
Bsc4I CCNNNNNNNGG 9 cut(s) 171, 725, 778, 1259, 1522, 1541, 1576, 1590, 1617
Bse118I RCCGGY 1 cut(s) 1583
Bse1I ACTGG 3 cut(s) 684, 1339, 1608
Bse3DI GCAATG 2 cut(s) 198, 719
BseDI CCNNGG 5 cut(s) 336, 445, 516, 762, 1083
BseGI GGATG 3 cut(s) 8, 101, 768
BseLI CCNNNNNNNGG 9 cut(s) 171, 725, 778, 1259, 1522, 1541, 1576, 1590, 1617
BseMI GCAATG 2 cut(s) 198, 719
BseNI ACTGG 3 cut(s) 684, 1339, 1608
BseRI GAGGAG 1 cut(s) 998
BseSI GKGCMC 1 cut(s) 1334
BseXI GCAGC 3 cut(s) 190, 472, 635
BseYI CCCAGC 1 cut(s) 1285
Bsh1285I CGRYCG 1 cut(s) 1588
BshFI GGCC 5 cut(s) 344, 521, 867, 1164, 1225
BshNI GGYRCC 3 cut(s) 571, 737, 1249
BshTI ACCGGT 1 cut(s) 1583
BsiEI CGRYCG 1 cut(s) 1588
BsiHKAI GWGCWC 2 cut(s) 119, 1334
BsiHKCI CYCGRG 1 cut(s) 251
BslFI GGGAC 3 cut(s) 441, 1101, 1396
BslI CCNNNNNNNGG 9 cut(s) 171, 725, 778, 1259, 1522, 1541, 1576, 1590, 1617
BsmAI GTCTC 4 cut(s) 579, 1172, 1300, 1631
BsmBI CGTCTC 2 cut(s) 1172, 1300
BsmFI GGGAC 3 cut(s) 441, 1101, 1396
BsmI GAATGC 2 cut(s) 390, 1229
BsnI GGCC 5 cut(s) 344, 521, 867, 1164, 1225
Bso31I GGTCTC 1 cut(s) 1631
BsoBI CYCGRG 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 394
Bsp1286I GDGCHC 3 cut(s) 119, 612, 1334
Bsp143I GATC 7 cut(s) 237, 363, 678, 692, 756, 856, 1564
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 3 cut(s) 626, 1247, 1314
BspANI GGCC 5 cut(s) 344, 521, 867, 1164, 1225
BspHI TCATGA 2 cut(s) 234, 1170
BspLI GGNNCC 6 cut(s) 573, 609, 739, 815, 1251, 1384
BspPI GGATC 3 cut(s) 371, 700, 751
BspT104I TTCGAA 1 cut(s) 394
BspT107I GGYRCC 3 cut(s) 571, 737, 1249
BspTNI GGTCTC 1 cut(s) 1631
BsrDI GCAATG 2 cut(s) 198, 719
BsrFI RCCGGY 1 cut(s) 1583
BsrI ACTGG 3 cut(s) 684, 1339, 1608
BssAI RCCGGY 1 cut(s) 1583
BssECI CCNNGG 5 cut(s) 336, 445, 516, 762, 1083
BssMI GATC 7 cut(s) 237, 363, 678, 692, 756, 856, 1564
BssNI GRCGYC 1 cut(s) 1513
BssT1I CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
Bst4CI ACNGT 4 cut(s) 269, 373, 742, 925
Bst6I CTCTTC 1 cut(s) 903
BstACI GRCGYC 1 cut(s) 1513
BstBI TTCGAA 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 1227
BstDEI CTNAG 3 cut(s) 35, 1116, 1628
BstDSI CCRYGG 1 cut(s) 336
BstEII GGTNACC 3 cut(s) 1558, 1579, 1606
BstF5I GGATG 3 cut(s) 8, 101, 768
BstKTI GATC 7 cut(s) 240, 366, 681, 695, 759, 859, 1567
BstMAI GTCTC 4 cut(s) 579, 1172, 1300, 1631
BstMBI GATC 7 cut(s) 237, 363, 678, 692, 756, 856, 1564
BstMCI CGRYCG 1 cut(s) 1588
BstMWI GCNNNNNNNGC 4 cut(s) 45, 167, 873, 1256
BstNSI RCATGY 1 cut(s) 932
BstPI GGTNACC 3 cut(s) 1558, 1579, 1606
BstSLI GKGCMC 1 cut(s) 1334
BstV1I GCAGC 3 cut(s) 190, 472, 635
BstV2I GAAGAC 1 cut(s) 148
BstXI CCANNNNNNTGG 2 cut(s) 315, 619
BsuRI GGCC 5 cut(s) 344, 521, 867, 1164, 1225
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 8, 101, 768
BtsI GCAGTG 1 cut(s) 1362
BtsIMutI CAGTG 5 cut(s) 930, 1057, 1332, 1362, 1601
Cac8I GCNNGC 1 cut(s) 1227
CciI TCATGA 2 cut(s) 234, 1170
Cfr10I RCCGGY 1 cut(s) 1583
Cfr13I GGNCC 1 cut(s) 1383
CseI GACGC 2 cut(s) 176, 1521
Csp6I GTAC 4 cut(s) 738, 921, 1210, 1311
CspAI ACCGGT 1 cut(s) 1583
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviAII CATG 7 cut(s) 235, 337, 839, 929, 965, 1171, 1213
CviQI GTAC 4 cut(s) 738, 921, 1210, 1311
DdeI CTNAG 3 cut(s) 35, 1116, 1628
DpnI GATC 7 cut(s) 239, 365, 680, 694, 758, 858, 1566
DpnII GATC 7 cut(s) 237, 363, 678, 692, 756, 856, 1564
EaeI YGGCCR 2 cut(s) 342, 1162
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
Eco130I CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
Eco147I AGGCCT 3 cut(s) 521, 867, 1225
Eco24I GRGCYC 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 1631
Eco47I GGWCC 1 cut(s) 1383
Eco57I CTGAAG 1 cut(s) 829
Eco88I CYCGRG 1 cut(s) 251
Eco91I GGTNACC 3 cut(s) 1558, 1579, 1606
EcoO65I GGTNACC 3 cut(s) 1558, 1579, 1606
EcoT14I CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
Esp3I CGTCTC 2 cut(s) 1172, 1300
FaeI CATG 7 cut(s) 238, 340, 842, 932, 968, 1174, 1216
FaqI GGGAC 3 cut(s) 441, 1101, 1396
FatI CATG 7 cut(s) 234, 336, 838, 928, 964, 1170, 1212
FauI CCCGC 1 cut(s) 619
FauNDI CATATG 1 cut(s) 53
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 4 cut(s) 204, 486, 624, 1248
FokI GGATG 2 cut(s) 88, 755
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 4 cut(s) 204, 486, 624, 1248
FspBI CTAG 5 cut(s) 227, 818, 1037, 1235, 1530
GluI GCNGC 4 cut(s) 204, 486, 624, 1248
GsaI CCCAGC 1 cut(s) 1289
GsuI CTGGAG 1 cut(s) 1356
HaeIII GGCC 5 cut(s) 344, 521, 867, 1164, 1225
HgaI GACGC 2 cut(s) 176, 1521
Hin1I GRCGYC 1 cut(s) 1513
Hin1II CATG 7 cut(s) 238, 340, 842, 932, 968, 1174, 1216
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 8 cut(s) 666, 1100, 1519, 1545, 1552, 1573, 1594, 1614
Hpy166II GTNNAC 1 cut(s) 1332
Hpy188I TCNGA 5 cut(s) 166, 791, 861, 1407, 1511
Hpy8I GTNNAC 1 cut(s) 1332
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 97, 224, 801, 1475
HpyCH4III ACNGT 4 cut(s) 269, 373, 742, 925
HpyCH4IV ACGT 1 cut(s) 1293
HpyCH4V TGCA 9 cut(s) 390, 458, 724, 838, 928, 1055, 1229, 1332, 1355
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 167, 873, 1256
HpyF3I CTNAG 3 cut(s) 35, 1116, 1628
HpySE526I ACGT 1 cut(s) 1293
Hsp92I GRCGYC 1 cut(s) 1513
Hsp92II CATG 7 cut(s) 238, 340, 842, 932, 968, 1174, 1216
KpnI GGTACC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 7 cut(s) 237, 363, 678, 692, 756, 856, 1564
LmnI GCTCC 3 cut(s) 607, 813, 1337
Lsp1109I GCAGC 3 cut(s) 190, 472, 635
LweI GCATC 1 cut(s) 57
MaeI CTAG 5 cut(s) 227, 818, 1037, 1235, 1530
MaeII ACGT 1 cut(s) 1293
MaeIII GTNAC 9 cut(s) 286, 440, 649, 1237, 1525, 1558, 1579, 1599, 1606
MalI GATC 7 cut(s) 239, 365, 680, 694, 758, 858, 1566
MboI GATC 7 cut(s) 237, 363, 678, 692, 756, 856, 1564
MfeI CAATTG 3 cut(s) 654, 774, 1059
MhlI GDGCHC 3 cut(s) 119, 612, 1334
MluCI AATT 7 cut(s) 275, 654, 774, 1059, 1341, 1390, 1505
MlyI GAGTC 3 cut(s) 1109, 1603, 1623
MmeI TCCRAC 2 cut(s) 189, 341
MslI CAYNNNNRTG 2 cut(s) 338, 593
MspA1I CMGCKG 1 cut(s) 626
MunI CAATTG 3 cut(s) 654, 774, 1059
Mva1269I GAATGC 2 cut(s) 390, 1229
MwoI GCNNNNNNNGC 4 cut(s) 45, 167, 873, 1256
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 53
NdeII GATC 7 cut(s) 237, 363, 678, 692, 756, 856, 1564
NlaIII CATG 7 cut(s) 238, 340, 842, 932, 968, 1174, 1216
NlaIV GGNNCC 6 cut(s) 573, 609, 739, 815, 1251, 1384
NmuCI GTSAC 6 cut(s) 1237, 1525, 1558, 1579, 1599, 1606
NspI RCATGY 1 cut(s) 932
NspV TTCGAA 1 cut(s) 394
OliI CACNNNNGTG 1 cut(s) 338
PagI TCATGA 2 cut(s) 234, 1170
PceI AGGCCT 3 cut(s) 521, 867, 1225
PctI GAATGC 2 cut(s) 390, 1229
PfeI GAWTC 5 cut(s) 666, 1519, 1545, 1552, 1573
PinAI ACCGGT 1 cut(s) 1583
PkrI GCNGC 4 cut(s) 205, 487, 625, 1249
PleI GAGTC 3 cut(s) 1108, 1602, 1622
PpsI GAGTC 3 cut(s) 1108, 1602, 1622
PspEI GGTNACC 3 cut(s) 1558, 1579, 1606
PspFI CCCAGC 1 cut(s) 1285
PspN4I GGNNCC 6 cut(s) 573, 609, 739, 815, 1251, 1384
PspPI GGNCC 1 cut(s) 1383
RsaI GTAC 4 cut(s) 739, 922, 1211, 1312
RsaNI GTAC 4 cut(s) 738, 921, 1210, 1311
RseI CAYNNNNRTG 2 cut(s) 338, 593
SatI GCNGC 4 cut(s) 204, 486, 624, 1248
Sau3AI GATC 7 cut(s) 237, 363, 678, 692, 756, 856, 1564
Sau96I GGNCC 1 cut(s) 1383
SchI GAGTC 3 cut(s) 1109, 1603, 1623
SduI GDGCHC 3 cut(s) 119, 612, 1334
SfaNI GCATC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 394
SinI GGWCC 1 cut(s) 1383
SmiMI CAYNNNNRTG 2 cut(s) 338, 593
SmlI CTYRAG 3 cut(s) 110, 869, 1198
SmoI CTYRAG 3 cut(s) 110, 869, 1198
SpeI ACTAGT 1 cut(s) 1529
Sse9I AATT 7 cut(s) 275, 654, 774, 1059, 1341, 1390, 1505
SseBI AGGCCT 3 cut(s) 521, 867, 1225
SsiI CCGC 3 cut(s) 626, 1247, 1314
SspI AATATT 1 cut(s) 324
SspMI CTAG 5 cut(s) 227, 818, 1037, 1235, 1530
StuI AGGCCT 3 cut(s) 521, 867, 1225
StyI CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
TaaI ACNGT 4 cut(s) 269, 373, 742, 925
TaiI ACGT 1 cut(s) 1296
TaqI TCGA 1 cut(s) 394
TasI AATT 7 cut(s) 275, 654, 774, 1059, 1341, 1390, 1505
TatI WGTACW 2 cut(s) 920, 1209
TauI GCSGC 1 cut(s) 1250
TfiI GAWTC 5 cut(s) 666, 1519, 1545, 1552, 1573
TscAI CASTG 5 cut(s) 930, 1057, 1339, 1362, 1608
TseFI GTSAC 6 cut(s) 1237, 1525, 1558, 1579, 1599, 1606
TseI GCWGC 3 cut(s) 203, 485, 623
Tsp45I GTSAC 6 cut(s) 1237, 1525, 1558, 1579, 1599, 1606
TspDTI ATGAA 4 cut(s) 923, 950, 1137, 1503
TspGWI ACGGA 3 cut(s) 87, 393, 1587
TspRI CASTG 5 cut(s) 930, 1057, 1339, 1362, 1608
VneI GTGCAC 1 cut(s) 1330
VpaK11BI GGWCC 1 cut(s) 1383
XapI RAATTY 2 cut(s) 1390, 1505
XceI RCATGY 1 cut(s) 932
XspI CTAG 5 cut(s) 227, 818, 1037, 1235, 1530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.