Rh6AG167700

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
26831992 .. 26833787
1796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG167700.1

Sequence Viewer

Length: 1623 bp
ATGTCTTCATCCTCATCAAAAGCTTTCCAATGGCTAAGCCTTGTGGGCATCATATGGCTTCAATCCATAAACGGAACAAACACCACCTTCCCTGCTTACTCATCCCAACTCAAGAGCACTCTCTCCATCTCCCAACTACAAATCAACAATCTCGTCTTCGCCTCCGACGCAGGGAAACTCTTTGGTTGGTTTTCCGGCATTGCTGCTATTTACCTTCCTCTCTGGCTAGTCCTCATGATCGGCTCACTTCTCGGGTTGATTGGCTACGGTGTCCAATTTCTATTCGTAACTAACCAAATCTCATCTCCATCATATTGGCAAATATTCTTGCTCACCATGGTGGCCGGAAATAGTGTCTGTTGGATCAACACCGTTTGCTATGTAGTTTGCATTCGAAACTTTCCGTTTCACCAACAGGTTGCTGTGGGACTAACAACAAGTTACCAAGGATTGAGTGCAAAAATCTACACAGATATTGTTAGTGCTGCTTTTTCTTCTTCACCTCATAAGAGAGCCAAGGCCTATCTTCTTCTAAACTCTCTCCTGCCTTTACTAGTCTGTGTTGTAGTGGCACCATTTGTGAGAGACATTGATGTGGGAACAGGGGAGCCCAGAAAAATGGCAGCGGGGTTCAAATCAATGTTTGTGGTAACAATTGCCACCGGAATCTATGCCGTGATCACCAGTTTAGGATCAATGTCGTCTATCCACTTATCGCCATTGCAGGGTGTGATAGGTACCGTATTGTTCCTACTGATCCCCTTGGTCATCCCAATTGTGGAAAAAATCGGAGAAACATTATCAAGAAGGTGGAGCCTAGACAGAGAGAACAGAGTGCATGACTTCAGCATAGAAGATCAGAAAGGCCTTGAGAGCATAGAGAGTGGTGTAGTGAAAGAGGAAGAAGAAGAGGAACATAGTACAGTGCATGTTCATAATGAGGTTGGTGAAGTTCAGGTTCATCATGGGATTGGTGTTAGAGAGGAGATTGGAGTGAAGTTGATGGTGAAAAGGATAGATTTCTGGTTATATTTCCTAGTGTATATTTTCAGTGCAACAATTGGGCTTGTGTTCTTGAACACCTTGGGACAGATAGCAGAGTCAAGAGGCTCATCTAAGACTTCTTCTCTGGTTTCTTTATCTTCTTCATTTGGGTTCTTTGGCCGTCTCATGACTTCACTTCTGGACTATTTCTTCTCAAGAAGCAAGTACATGATTTCAAGGCCTGCGTTCCTAGTGACATTAGCGGCACCAATAGCAGGAGTTTTCTTCTTTCTTCTCAACCCAGCTAACGTCTCCCTTATCATCAGTACCGCCATTATAGGAGTGTGCACTGGAGCAATTACTTCTATTGCAGTGTCCATAACCACAGAGCTATTCGGGACCAAGAATTTCTCAATAAATCAGAATGTGGTGGTTGTGAATATCTCAATCGGGTCGTTTCTTTTTGGCTACTCATCTGCTCTTATTTATCGCAAGGAAGGAAATGAAGATGGTAGCTGCTTGGGAATGGCTTGTTATAGGAGCACCTTCATTATTTGGGGTAGTCTTTGTACGTTAGGGACTACTCTAGCTTTTGTGCTATATGCAAGAACAAGAAAGTTCTACTCCAAAATATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

540

Amino Acids

59.15

Weight (kDa)

8.77

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 10 - 259 3.5e-76 Nodulin-like
NFD4_C PF23262 324 - 537 5e-99 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 737
AccB1I GGYRCC 3 cut(s) 571, 737, 1249
AciI CCGC 3 cut(s) 626, 1247, 1314
AclWI GGATC 3 cut(s) 371, 700, 751
AcoI YGGCCR 2 cut(s) 342, 1162
AcsI RAATTY 1 cut(s) 1390
AcuI CTGAAG 1 cut(s) 829
AfaI GTAC 5 cut(s) 739, 922, 1211, 1312, 1555
AfiI CCNNNNNNNGG 4 cut(s) 171, 725, 778, 1259
AgsI TTSAA 4 cut(s) 62, 634, 1078, 1221
AhlI ACTAGT 1 cut(s) 553
AleI CACNNNNGTG 1 cut(s) 338
AluBI AGCT 5 cut(s) 23, 1289, 1375, 1500, 1574
AluI AGCT 5 cut(s) 23, 1289, 1375, 1500, 1574
Alw21I GWGCWC 3 cut(s) 119, 1334, 1529
Alw26I GTCTC 3 cut(s) 579, 1172, 1300
Alw44I GTGCAC 1 cut(s) 1330
AlwI GGATC 3 cut(s) 371, 700, 751
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 5 cut(s) 342, 519, 865, 1162, 1223
ApaLI GTGCAC 1 cut(s) 1330
ApeKI GCWGC 4 cut(s) 203, 485, 623, 1500
ApoI RAATTY 1 cut(s) 1390
Asp718I GGTACC 1 cut(s) 737
AspS9I GGNCC 1 cut(s) 1383
AsuHPI GGTGA 6 cut(s) 325, 401, 492, 673, 959, 1018
AsuII TTCGAA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 1383
BaeGI GKGCMC 1 cut(s) 1334
BanI GGYRCC 3 cut(s) 571, 737, 1249
BanII GRGCYC 1 cut(s) 612
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 3 cut(s) 119, 1334, 1529
BbvI GCAGC 4 cut(s) 190, 472, 635, 1487
BccI CCATC 4 cut(s) 134, 316, 997, 1487
BceAI ACGGC 2 cut(s) 659, 1149
BclI TGATCA 1 cut(s) 678
BcoDI GTCTC 3 cut(s) 579, 1172, 1300
BcuI ACTAGT 1 cut(s) 553
BfaI CTAG 6 cut(s) 227, 554, 818, 1037, 1235, 1571
BglI GCCNNNNNGGC 1 cut(s) 45
BisI GCNGC 5 cut(s) 204, 486, 624, 1248, 1501
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 5 cut(s) 205, 487, 625, 1249, 1502
Bme18I GGWCC 1 cut(s) 1383
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 1383
BmiI GGNNCC 6 cut(s) 573, 609, 739, 815, 1251, 1384
BmsI GCATC 1 cut(s) 57
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 1 cut(s) 1356
Bpu1102I GCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 394
BpuEI CTTGAG 3 cut(s) 95, 890, 1183
BsaJI CCNNGG 5 cut(s) 336, 445, 516, 762, 1083
BsaWI WCCGGW 1 cut(s) 662
Bsc4I CCNNNNNNNGG 4 cut(s) 171, 725, 778, 1259
Bse1I ACTGG 2 cut(s) 684, 1339
Bse3DI GCAATG 2 cut(s) 198, 719
BseDI CCNNGG 5 cut(s) 336, 445, 516, 762, 1083
BseGI GGATG 3 cut(s) 8, 101, 768
BseLI CCNNNNNNNGG 4 cut(s) 171, 725, 778, 1259
BseMI GCAATG 2 cut(s) 198, 719
BseNI ACTGG 2 cut(s) 684, 1339
BseRI GAGGAG 1 cut(s) 998
BseSI GKGCMC 1 cut(s) 1334
BseXI GCAGC 4 cut(s) 190, 472, 635, 1487
BseYI CCCAGC 1 cut(s) 1285
BshFI GGCC 5 cut(s) 344, 521, 867, 1164, 1225
BshNI GGYRCC 3 cut(s) 571, 737, 1249
BsiHKAI GWGCWC 3 cut(s) 119, 1334, 1529
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 3 cut(s) 195, 345, 663
BslFI GGGAC 4 cut(s) 441, 1101, 1396, 1576
BslI CCNNNNNNNGG 4 cut(s) 171, 725, 778, 1259
BsmAI GTCTC 3 cut(s) 579, 1172, 1300
BsmBI CGTCTC 2 cut(s) 1172, 1300
BsmFI GGGAC 4 cut(s) 441, 1101, 1396, 1576
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 5 cut(s) 344, 521, 867, 1164, 1225
BsoBI CYCGRG 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 394
Bsp1286I GDGCHC 4 cut(s) 119, 612, 1334, 1529
Bsp143I GATC 6 cut(s) 237, 363, 678, 692, 756, 856
Bsp1720I GCTNAGC 1 cut(s) 35
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 3 cut(s) 626, 1247, 1314
BspANI GGCC 5 cut(s) 344, 521, 867, 1164, 1225
BspHI TCATGA 2 cut(s) 234, 1170
BspLI GGNNCC 6 cut(s) 573, 609, 739, 815, 1251, 1384
BspPI GGATC 3 cut(s) 371, 700, 751
BspT104I TTCGAA 1 cut(s) 394
BspT107I GGYRCC 3 cut(s) 571, 737, 1249
BsrDI GCAATG 2 cut(s) 198, 719
BsrI ACTGG 2 cut(s) 684, 1339
BssECI CCNNGG 5 cut(s) 336, 445, 516, 762, 1083
BssMI GATC 6 cut(s) 237, 363, 678, 692, 756, 856
BssT1I CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
Bst4CI ACNGT 4 cut(s) 269, 373, 742, 925
Bst6I CTCTTC 1 cut(s) 903
BstBI TTCGAA 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 1227
BstDEI CTNAG 2 cut(s) 35, 1116
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 3 cut(s) 8, 101, 768
BstKTI GATC 6 cut(s) 240, 366, 681, 695, 759, 859
BstMAI GTCTC 3 cut(s) 579, 1172, 1300
BstMBI GATC 6 cut(s) 237, 363, 678, 692, 756, 856
BstMWI GCNNNNNNNGC 4 cut(s) 45, 167, 873, 1256
BstNSI RCATGY 1 cut(s) 932
BstSLI GKGCMC 1 cut(s) 1334
BstV1I GCAGC 4 cut(s) 190, 472, 635, 1487
BstV2I GAAGAC 1 cut(s) 148
BstXI CCANNNNNNTGG 2 cut(s) 315, 619
BsuRI GGCC 5 cut(s) 344, 521, 867, 1164, 1225
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 3 cut(s) 8, 101, 768
BtsI GCAGTG 1 cut(s) 1362
BtsIMutI CAGTG 4 cut(s) 930, 1057, 1332, 1362
Cac8I GCNNGC 1 cut(s) 1227
CciI TCATGA 2 cut(s) 234, 1170
Cfr13I GGNCC 1 cut(s) 1383
CseI GACGC 1 cut(s) 176
Csp6I GTAC 5 cut(s) 738, 921, 1210, 1311, 1554
CspCI CAANNNNNGTGG 2 cut(s) 627, 662
CviAII CATG 7 cut(s) 235, 337, 839, 929, 965, 1171, 1213
CviQI GTAC 5 cut(s) 738, 921, 1210, 1311, 1554
DdeI CTNAG 2 cut(s) 35, 1116
DpnI GATC 6 cut(s) 239, 365, 680, 694, 758, 858
DpnII GATC 6 cut(s) 237, 363, 678, 692, 756, 856
EaeI YGGCCR 2 cut(s) 342, 1162
Eam1104I CTCTTC 1 cut(s) 903
EarI CTCTTC 1 cut(s) 903
Eco130I CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
Eco147I AGGCCT 3 cut(s) 521, 867, 1225
Eco24I GRGCYC 1 cut(s) 612
Eco47I GGWCC 1 cut(s) 1383
Eco57I CTGAAG 1 cut(s) 829
Eco88I CYCGRG 1 cut(s) 251
EcoT14I CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
Esp3I CGTCTC 2 cut(s) 1172, 1300
FaeI CATG 7 cut(s) 238, 340, 842, 932, 968, 1174, 1216
FaqI GGGAC 4 cut(s) 441, 1101, 1396, 1576
FatI CATG 7 cut(s) 234, 336, 838, 928, 964, 1170, 1212
FauI CCCGC 1 cut(s) 619
FauNDI CATATG 1 cut(s) 53
FbaI TGATCA 1 cut(s) 678
Fnu4HI GCNGC 5 cut(s) 204, 486, 624, 1248, 1501
FokI GGATG 2 cut(s) 88, 755
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 5 cut(s) 204, 486, 624, 1248, 1501
FspBI CTAG 6 cut(s) 227, 554, 818, 1037, 1235, 1571
GluI GCNGC 5 cut(s) 204, 486, 624, 1248, 1501
GsaI CCCAGC 1 cut(s) 1289
GsuI CTGGAG 1 cut(s) 1356
HaeIII GGCC 5 cut(s) 344, 521, 867, 1164, 1225
HapII CCGG 3 cut(s) 195, 345, 663
HgaI GACGC 1 cut(s) 176
Hin1II CATG 7 cut(s) 238, 340, 842, 932, 968, 1174, 1216
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 666, 1100
HpaII CCGG 3 cut(s) 195, 345, 663
HphI GGTGA 6 cut(s) 325, 401, 492, 673, 959, 1018
Hpy166II GTNNAC 1 cut(s) 1332
Hpy188I TCNGA 4 cut(s) 166, 791, 861, 1407
Hpy188III TCNNGA 9 cut(s) 112, 235, 804, 1075, 1104, 1171, 1184, 1200, 1381
Hpy8I GTNNAC 1 cut(s) 1332
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 5 cut(s) 97, 224, 801, 1475, 1540
HpyCH4III ACNGT 4 cut(s) 269, 373, 742, 925
HpyCH4IV ACGT 2 cut(s) 1293, 1556
HpyCH4V TGCA 9 cut(s) 390, 458, 724, 838, 928, 1055, 1332, 1355, 1589
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 167, 873, 1256
HpyF3I CTNAG 2 cut(s) 35, 1116
HpySE526I ACGT 2 cut(s) 1293, 1556
Hsp92II CATG 7 cut(s) 238, 340, 842, 932, 968, 1174, 1216
KpnI GGTACC 1 cut(s) 741
Ksp22I TGATCA 1 cut(s) 678
Kzo9I GATC 6 cut(s) 237, 363, 678, 692, 756, 856
LmnI GCTCC 4 cut(s) 607, 813, 1337, 1524
Lsp1109I GCAGC 4 cut(s) 190, 472, 635, 1487
LweI GCATC 1 cut(s) 57
MaeI CTAG 6 cut(s) 227, 554, 818, 1037, 1235, 1571
MaeII ACGT 2 cut(s) 1293, 1556
MaeIII GTNAC 4 cut(s) 286, 440, 649, 1237
MalI GATC 6 cut(s) 239, 365, 680, 694, 758, 858
MboI GATC 6 cut(s) 237, 363, 678, 692, 756, 856
MfeI CAATTG 3 cut(s) 654, 774, 1059
MhlI GDGCHC 4 cut(s) 119, 612, 1334, 1529
MluCI AATT 6 cut(s) 275, 654, 774, 1059, 1341, 1390
MlyI GAGTC 1 cut(s) 1109
MmeI TCCRAC 2 cut(s) 189, 341
MslI CAYNNNNRTG 2 cut(s) 338, 593
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 3 cut(s) 195, 345, 663
MunI CAATTG 3 cut(s) 654, 774, 1059
Mva1269I GAATGC 1 cut(s) 390
MwoI GCNNNNNNNGC 4 cut(s) 45, 167, 873, 1256
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 53
NdeII GATC 6 cut(s) 237, 363, 678, 692, 756, 856
NlaIII CATG 7 cut(s) 238, 340, 842, 932, 968, 1174, 1216
NlaIV GGNNCC 6 cut(s) 573, 609, 739, 815, 1251, 1384
NmuCI GTSAC 1 cut(s) 1237
NspI RCATGY 1 cut(s) 932
NspV TTCGAA 1 cut(s) 394
OliI CACNNNNGTG 1 cut(s) 338
PagI TCATGA 2 cut(s) 234, 1170
PceI AGGCCT 3 cut(s) 521, 867, 1225
PctI GAATGC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 666
PkrI GCNGC 5 cut(s) 205, 487, 625, 1249, 1502
PleI GAGTC 1 cut(s) 1108
PpsI GAGTC 1 cut(s) 1108
PspFI CCCAGC 1 cut(s) 1285
PspN4I GGNNCC 6 cut(s) 573, 609, 739, 815, 1251, 1384
PspPI GGNCC 1 cut(s) 1383
RsaI GTAC 5 cut(s) 739, 922, 1211, 1312, 1555
RsaNI GTAC 5 cut(s) 738, 921, 1210, 1311, 1554
RseI CAYNNNNRTG 2 cut(s) 338, 593
SatI GCNGC 5 cut(s) 204, 486, 624, 1248, 1501
Sau3AI GATC 6 cut(s) 237, 363, 678, 692, 756, 856
Sau96I GGNCC 1 cut(s) 1383
SchI GAGTC 1 cut(s) 1109
SduI GDGCHC 4 cut(s) 119, 612, 1334, 1529
SfaNI GCATC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 394
SinI GGWCC 1 cut(s) 1383
SmiMI CAYNNNNRTG 2 cut(s) 338, 593
SmlI CTYRAG 3 cut(s) 110, 869, 1198
SmoI CTYRAG 3 cut(s) 110, 869, 1198
SpeI ACTAGT 1 cut(s) 553
Sse9I AATT 6 cut(s) 275, 654, 774, 1059, 1341, 1390
SseBI AGGCCT 3 cut(s) 521, 867, 1225
SsiI CCGC 3 cut(s) 626, 1247, 1314
SspI AATATT 1 cut(s) 324
SspMI CTAG 6 cut(s) 227, 554, 818, 1037, 1235, 1571
StuI AGGCCT 3 cut(s) 521, 867, 1225
StyI CCWWGG 5 cut(s) 336, 445, 516, 762, 1083
TaaI ACNGT 4 cut(s) 269, 373, 742, 925
TaiI ACGT 2 cut(s) 1296, 1559
TaqI TCGA 1 cut(s) 394
TasI AATT 6 cut(s) 275, 654, 774, 1059, 1341, 1390
TatI WGTACW 2 cut(s) 920, 1209
TauI GCSGC 1 cut(s) 1250
TfiI GAWTC 1 cut(s) 666
TscAI CASTG 4 cut(s) 930, 1057, 1339, 1362
TseFI GTSAC 1 cut(s) 1237
TseI GCWGC 4 cut(s) 203, 485, 623, 1500
Tsp45I GTSAC 1 cut(s) 1237
TspDTI ATGAA 5 cut(s) 923, 950, 1137, 1503, 1522
TspGWI ACGGA 2 cut(s) 87, 393
TspRI CASTG 4 cut(s) 930, 1057, 1339, 1362
VneI GTGCAC 1 cut(s) 1330
VpaK11BI GGWCC 1 cut(s) 1383
XapI RAATTY 1 cut(s) 1390
XceI RCATGY 1 cut(s) 932
XspI CTAG 6 cut(s) 227, 554, 818, 1037, 1235, 1571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.