Rw5G038680

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
68299058 .. 68300845
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G038680.1

Sequence Viewer

Length: 1608 bp
ATGTACAGACAAGCCAATCTTGGCTCCTACTTTGCCATGTCTTCCTCATCAAAAGCTTTCCAATGGTTAAGCCTAGTGGCCATCATATGGCTTCAGTCCATAAATGGAACAAACACCACCTTCCCTGCTTACTCATCCCAACTCAAGAGCACTCTATCCTTGTCCCAACTACAAATCAACAATCTCGTCTTTGCCTCCGACGCAGGGAAGCTCTTTGGTTGGTTTTCCGGCATTGCTGCTACTTACCTTCCCCTTTGGCGAGTCCTCATGATCGGCTCACTTCTCGGGTTGATTGGCTACGGCGTCCAATTTCTATTCGTAACAGACAAAATCTCATCTCCAGCATATTGGCAAATATTCTTGCTCACCATGGTGGCCGGAAATAGCGTCTGTTGGATCAATACCGTTTGCTATGTTGTTAGTATTCGAAACTTTCCGTTTCACCAACAGGTTGCTGTGGGACTAACAACAAGTTATCAAGGATTGAGTGCAAAAATCTACACAGATATTGTTTGTACTGCTTTTTCTTCTTCACCTCATAAAAGAGCACAGGCCTATCTTCTTCTAAACTCTCTCCTACCTTTACTAGTCTCTGTTGTCGTGGCACCATTGGCGAGAAACATTGATGTGGGAACAGGGGAGCCGAGAAACATGGCAGCGGGGTTCAATTTGAAGTTTGTGATAACCATTGCCACCGGAATCTATGCCGTCATCAACAGTTTAGGATCAATGATCGGCTTAGACAGAATGATAGGTACCGGAGTGTTCCTACTGATCCCCTTGGTAATCCCAATTGTAGTAAAAATCAGAGAAAAATTATCAAGAAAATGGAGCCTAGACAGAGAGAACAGAGTGTACAATGTCAGCATAGATGATCAGAATGGCCTTGAGAAAGAAGAGGAACATAGTACAGTGCAGGTTCATGATGAGGTTGGTGAGGTACAGGTTAATCGTGGGATTGGTGTTAGAGAGGAGATTGGAGTGAAGTTGATGGTGCAAAGGATAGATTTCTGGTTATATTTCCTAGTGTATTTTTTCAGTGCAACAATTGGGCTTGTGTTCTTGAACACCTTGGGACAGATAGAGGAGTCAAGAGGCTCATCTAAGACTTCTTCTCTGGTTTCTTTATCTTCTTCCTTAGGCTTCTTTGGCCGTCTCATGCCTTCACTTCTGGACTATTTCTTCTCAAGCAAGTGTATGATTTCAAGGCCTGCATTCCTAATGGCATTAGCAGCACCAATGGCAGGAGTTTTTTTTTTGCTTCTCAACCCAGCTAACGTCTCTCTTATCATCAGTACCGCCATTATAGGAGTGTGCACTGGAGCAATTACTTCTATTGCAGTGTCCATAACCGCAGAACTATTCGGGACCAAGAAATTCTCAATAAATCACAATGTGGTGGTTGCGAATATCTCAGTTGGATCGTTTCTTTTTGGCTACTCATATGCTCTTCTTTATCGCAAGGAAGGAGATGAAGATGGTAGCTGCTTGGGAATGGCTTGTTACAGAAGCACGTTCATTATCTGGGGTAGTCTCTGTACGTTAGGGACTGTCCTAGCTTTAACGCTATATGCAAGAACAAGAAAGTTCTACTCCAAAAGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

535

Amino Acids

58.78

Weight (kDa)

9.24

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 21 - 268 5.2e-71 Nodulin-like
NFD4_C PF23262 320 - 532 8.8e-103 NFD4, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 907
Acc65I GGTACC 1 cut(s) 755
AccB1I GGYRCC 2 cut(s) 604, 755
AccB7I CCANNNNNTGG 1 cut(s) 87
AciI CCGC 3 cut(s) 659, 1299, 1353
AclWI GGATC 4 cut(s) 404, 733, 769, 1429
AcoI YGGCCR 3 cut(s) 78, 375, 1150
AcsI RAATTY 1 cut(s) 1376
AcuI CTGAAG 1 cut(s) 77
AcyI GRCGYC 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 1396
AfaI GTAC 8 cut(s) 5, 517, 757, 857, 910, 942, 1297, 1540
AfiI CCNNNNNNNGG 3 cut(s) 87, 204, 1244
AgsI TTSAA 4 cut(s) 667, 673, 1066, 1206
AhlI ACTAGT 1 cut(s) 586
AleI CACNNNNGTG 1 cut(s) 371
AluBI AGCT 5 cut(s) 56, 211, 1274, 1485, 1559
AluI AGCT 5 cut(s) 56, 211, 1274, 1485, 1559
Alw21I GWGCWC 3 cut(s) 152, 550, 1319
Alw26I GTCTC 4 cut(s) 595, 1160, 1285, 1538
Alw44I GTGCAC 1 cut(s) 1315
AlwI GGATC 4 cut(s) 404, 733, 769, 1429
Ama87I CYCGRG 1 cut(s) 284
AoxI GGCC 6 cut(s) 78, 375, 552, 883, 1150, 1208
ApaLI GTGCAC 1 cut(s) 1315
ApeKI GCWGC 4 cut(s) 236, 656, 1232, 1485
ApoI RAATTY 1 cut(s) 1376
Asp718I GGTACC 1 cut(s) 755
AspS9I GGNCC 1 cut(s) 1368
AsuHPI GGTGA 4 cut(s) 358, 434, 525, 947
AsuII TTCGAA 1 cut(s) 427
AvaI CYCGRG 1 cut(s) 284
AvaII GGWCC 1 cut(s) 1368
AxyI CCTNAGG 1 cut(s) 1138
BaeGI GKGCMC 1 cut(s) 1319
BaeI ACNNNNGTAYC 2 cut(s) 747, 780
BalI TGGCCA 1 cut(s) 80
BanI GGYRCC 2 cut(s) 604, 755
BbsI GAAGAC 1 cut(s) 33
Bbv12I GWGCWC 3 cut(s) 152, 550, 1319
BbvI GCAGC 4 cut(s) 223, 668, 1244, 1472
BccI CCATC 3 cut(s) 89, 985, 1472
BceAI ACGGC 3 cut(s) 316, 692, 1137
BclI TGATCA 1 cut(s) 874
BcoDI GTCTC 4 cut(s) 595, 1160, 1285, 1538
BcuI ACTAGT 1 cut(s) 586
BfaI CTAG 5 cut(s) 74, 587, 836, 1025, 1556
BfuAI ACCTGC 1 cut(s) 907
BisI GCNGC 4 cut(s) 237, 657, 1233, 1486
BlsI GCNGC 4 cut(s) 238, 658, 1234, 1487
Bme18I GGWCC 1 cut(s) 1368
BmeT110I CYCGRG 1 cut(s) 284
BmgT120I GGNCC 1 cut(s) 1368
BmiI GGNNCC 6 cut(s) 25, 606, 642, 757, 833, 1369
BpiI GAAGAC 1 cut(s) 33
BpmI CTGGAG 2 cut(s) 324, 1341
Bpu14I TTCGAA 1 cut(s) 427
BpuEI CTTGAG 3 cut(s) 128, 908, 1171
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 3 cut(s) 369, 780, 1071
BsaWI WCCGGW 2 cut(s) 695, 758
Bsc4I CCNNNNNNNGG 3 cut(s) 87, 204, 1244
Bse1I ACTGG 1 cut(s) 1324
Bse21I CCTNAGG 1 cut(s) 1138
Bse3DI GCAATG 2 cut(s) 231, 687
BseDI CCNNGG 3 cut(s) 369, 780, 1071
BseGI GGATG 1 cut(s) 134
BseLI CCNNNNNNNGG 3 cut(s) 87, 204, 1244
BseMI GCAATG 2 cut(s) 231, 687
BseMII CTCAG 1 cut(s) 1428
BseNI ACTGG 1 cut(s) 1324
BseRI GAGGAG 2 cut(s) 986, 1100
BseSI GKGCMC 1 cut(s) 1319
BseXI GCAGC 4 cut(s) 223, 668, 1244, 1472
BseYI CCCAGC 1 cut(s) 1270
BsgI GTGCAG 1 cut(s) 935
BshFI GGCC 6 cut(s) 80, 377, 554, 885, 1152, 1210
BshNI GGYRCC 2 cut(s) 604, 755
BsiHKAI GWGCWC 3 cut(s) 152, 550, 1319
BsiHKCI CYCGRG 1 cut(s) 284
BsiSI CCGG 4 cut(s) 228, 378, 696, 759
BslFI GGGAC 5 cut(s) 148, 474, 1089, 1381, 1561
BslI CCNNNNNNNGG 3 cut(s) 87, 204, 1244
BsmAI GTCTC 4 cut(s) 595, 1160, 1285, 1538
BsmBI CGTCTC 2 cut(s) 1160, 1285
BsmFI GGGAC 5 cut(s) 148, 474, 1089, 1381, 1561
BsmI GAATGC 1 cut(s) 1214
BsnI GGCC 6 cut(s) 80, 377, 554, 885, 1152, 1210
BsoBI CYCGRG 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 427
Bsp1286I GDGCHC 3 cut(s) 152, 550, 1319
Bsp1407I TGTACA 2 cut(s) 3, 855
Bsp143I GATC 8 cut(s) 270, 396, 725, 732, 774, 874, 1421, 1601
Bsp19I CCATGG 1 cut(s) 369
BspACI CCGC 3 cut(s) 659, 1299, 1353
BspANI GGCC 6 cut(s) 80, 377, 554, 885, 1152, 1210
BspCNI CTCAG 1 cut(s) 1427
BspHI TCATGA 2 cut(s) 267, 922
BspLI GGNNCC 6 cut(s) 25, 606, 642, 757, 833, 1369
BspMI ACCTGC 1 cut(s) 907
BspPI GGATC 4 cut(s) 404, 733, 769, 1429
BspQI GCTCTTC 1 cut(s) 1455
BspT104I TTCGAA 1 cut(s) 427
BspT107I GGYRCC 2 cut(s) 604, 755
BsrDI GCAATG 2 cut(s) 231, 687
BsrGI TGTACA 2 cut(s) 3, 855
BsrI ACTGG 1 cut(s) 1324
BssECI CCNNGG 3 cut(s) 369, 780, 1071
BssMI GATC 8 cut(s) 270, 396, 725, 732, 774, 874, 1421, 1601
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 3 cut(s) 369, 780, 1071
Bst4CI ACNGT 4 cut(s) 406, 719, 913, 1552
Bst6I CTCTTC 2 cut(s) 891, 1455
BstACI GRCGYC 1 cut(s) 303
BstAUI TGTACA 2 cut(s) 3, 855
BstBI TTCGAA 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 1212
BstDEI CTNAG 4 cut(s) 739, 1104, 1138, 1414
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 1 cut(s) 134
BstKTI GATC 8 cut(s) 273, 399, 728, 735, 777, 877, 1424, 1604
BstMAI GTCTC 4 cut(s) 595, 1160, 1285, 1538
BstMBI GATC 8 cut(s) 270, 396, 725, 732, 774, 874, 1421, 1601
BstMWI GCNNNNNNNGC 5 cut(s) 200, 611, 1149, 1232, 1241
BstSLI GKGCMC 1 cut(s) 1319
BstV1I GCAGC 4 cut(s) 223, 668, 1244, 1472
BstV2I GAAGAC 1 cut(s) 33
BstXI CCANNNNNNTGG 1 cut(s) 348
Bsu36I CCTNAGG 1 cut(s) 1138
BsuRI GGCC 6 cut(s) 80, 377, 554, 885, 1152, 1210
BtgI CCRYGG 1 cut(s) 369
BtsCI GGATG 1 cut(s) 134
BtsI GCAGTG 1 cut(s) 1347
BtsIMutI CAGTG 4 cut(s) 918, 1045, 1317, 1347
BveI ACCTGC 1 cut(s) 907
Cac8I GCNNGC 1 cut(s) 1212
CciI TCATGA 2 cut(s) 267, 922
Cfr13I GGNCC 1 cut(s) 1368
CseI GACGC 3 cut(s) 209, 292, 376
Csp6I GTAC 8 cut(s) 4, 516, 756, 856, 909, 941, 1296, 1539
CviAII CATG 6 cut(s) 37, 268, 370, 652, 923, 1159
CviQI GTAC 8 cut(s) 4, 516, 756, 856, 909, 941, 1296, 1539
DdeI CTNAG 4 cut(s) 739, 1104, 1138, 1414
DpnI GATC 8 cut(s) 272, 398, 727, 734, 776, 876, 1423, 1603
DpnII GATC 8 cut(s) 270, 396, 725, 732, 774, 874, 1421, 1601
DraIII CACNNNGTG 1 cut(s) 1396
EaeI YGGCCR 3 cut(s) 78, 375, 1150
Eam1104I CTCTTC 2 cut(s) 891, 1455
EarI CTCTTC 2 cut(s) 891, 1455
Eco130I CCWWGG 3 cut(s) 369, 780, 1071
Eco147I AGGCCT 2 cut(s) 554, 1210
Eco47I GGWCC 1 cut(s) 1368
Eco57I CTGAAG 1 cut(s) 77
Eco81I CCTNAGG 1 cut(s) 1138
Eco88I CYCGRG 1 cut(s) 284
EcoT14I CCWWGG 3 cut(s) 369, 780, 1071
ErhI CCWWGG 3 cut(s) 369, 780, 1071
Esp3I CGTCTC 2 cut(s) 1160, 1285
FaeI CATG 6 cut(s) 40, 271, 373, 655, 926, 1162
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 5 cut(s) 148, 474, 1089, 1381, 1561
FatI CATG 6 cut(s) 36, 267, 369, 651, 922, 1158
FauI CCCGC 1 cut(s) 652
FauNDI CATATG 2 cut(s) 86, 1444
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 4 cut(s) 237, 657, 1233, 1486
FokI GGATG 1 cut(s) 121
Fsp4HI GCNGC 4 cut(s) 237, 657, 1233, 1486
FspBI CTAG 5 cut(s) 74, 587, 836, 1025, 1556
GluI GCNGC 4 cut(s) 237, 657, 1233, 1486
GsaI CCCAGC 1 cut(s) 1274
GsuI CTGGAG 2 cut(s) 324, 1341
HaeIII GGCC 6 cut(s) 80, 377, 554, 885, 1152, 1210
HapII CCGG 4 cut(s) 228, 378, 696, 759
HgaI GACGC 3 cut(s) 209, 292, 376
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 6 cut(s) 40, 271, 373, 655, 926, 1162
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 3 cut(s) 261, 699, 1088
HpaII CCGG 4 cut(s) 228, 378, 696, 759
HphI GGTGA 4 cut(s) 358, 434, 525, 947
Hpy166II GTNNAC 2 cut(s) 856, 1317
Hpy188I TCNGA 3 cut(s) 199, 809, 879
Hpy188III TCNNGA 8 cut(s) 145, 268, 822, 923, 1063, 1092, 1172, 1366
Hpy8I GTNNAC 2 cut(s) 856, 1317
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 4 cut(s) 130, 257, 1173, 1460
HpyCH4III ACNGT 4 cut(s) 406, 719, 913, 1552
HpyCH4IV ACGT 3 cut(s) 1278, 1514, 1541
HpyCH4V TGCA 8 cut(s) 491, 916, 997, 1043, 1214, 1317, 1340, 1574
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 611, 1149, 1232, 1241
HpyF3I CTNAG 4 cut(s) 739, 1104, 1138, 1414
HpySE526I ACGT 3 cut(s) 1278, 1514, 1541
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 6 cut(s) 40, 271, 373, 655, 926, 1162
KpnI GGTACC 1 cut(s) 759
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 8 cut(s) 270, 396, 725, 732, 774, 874, 1421, 1601
LguI GCTCTTC 1 cut(s) 1455
LmnI GCTCC 4 cut(s) 29, 640, 831, 1322
Lsp1109I GCAGC 4 cut(s) 223, 668, 1244, 1472
MaeI CTAG 5 cut(s) 74, 587, 836, 1025, 1556
MaeII ACGT 3 cut(s) 1278, 1514, 1541
MaeIII GTNAC 2 cut(s) 319, 1502
MalI GATC 8 cut(s) 272, 398, 727, 734, 776, 876, 1423, 1603
MboI GATC 8 cut(s) 270, 396, 725, 732, 774, 874, 1421, 1601
MfeI CAATTG 2 cut(s) 792, 1047
MhlI GDGCHC 3 cut(s) 152, 550, 1319
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 7 cut(s) 308, 667, 792, 815, 1047, 1326, 1376
MluNI TGGCCA 1 cut(s) 80
MlyI GAGTC 2 cut(s) 270, 1097
MmeI TCCRAC 3 cut(s) 222, 374, 1399
Mox20I TGGCCA 1 cut(s) 80
MscI TGGCCA 1 cut(s) 80
MseI TTAA 3 cut(s) 68, 948, 1562
MslI CAYNNNNRTG 2 cut(s) 371, 626
Msp20I TGGCCA 1 cut(s) 80
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 4 cut(s) 228, 378, 696, 759
MunI CAATTG 2 cut(s) 792, 1047
Mva1269I GAATGC 1 cut(s) 1214
MwoI GCNNNNNNNGC 5 cut(s) 200, 611, 1149, 1232, 1241
NcoI CCATGG 1 cut(s) 369
NdeI CATATG 2 cut(s) 86, 1444
NdeII GATC 8 cut(s) 270, 396, 725, 732, 774, 874, 1421, 1601
NlaIII CATG 6 cut(s) 40, 271, 373, 655, 926, 1162
NlaIV GGNNCC 6 cut(s) 25, 606, 642, 757, 833, 1369
NmeAIII GCCGAG 1 cut(s) 669
NspV TTCGAA 1 cut(s) 427
OliI CACNNNNGTG 1 cut(s) 371
PagI TCATGA 2 cut(s) 267, 922
PceI AGGCCT 2 cut(s) 554, 1210
PciSI GCTCTTC 1 cut(s) 1455
PctI GAATGC 1 cut(s) 1214
PfeI GAWTC 1 cut(s) 699
PflMI CCANNNNNTGG 1 cut(s) 87
PkrI GCNGC 4 cut(s) 238, 658, 1234, 1487
PleI GAGTC 2 cut(s) 269, 1096
PpsI GAGTC 2 cut(s) 269, 1096
PspFI CCCAGC 1 cut(s) 1270
PspN4I GGNNCC 6 cut(s) 25, 606, 642, 757, 833, 1369
PspPI GGNCC 1 cut(s) 1368
PsrI GAACNNNNNNTAC 2 cut(s) 839, 871
RsaI GTAC 8 cut(s) 5, 517, 757, 857, 910, 942, 1297, 1540
RsaNI GTAC 8 cut(s) 4, 516, 756, 856, 909, 941, 1296, 1539
RseI CAYNNNNRTG 2 cut(s) 371, 626
SapI GCTCTTC 1 cut(s) 1455
SaqAI TTAA 3 cut(s) 68, 948, 1562
SatI GCNGC 4 cut(s) 237, 657, 1233, 1486
Sau3AI GATC 8 cut(s) 270, 396, 725, 732, 774, 874, 1421, 1601
Sau96I GGNCC 1 cut(s) 1368
SchI GAGTC 2 cut(s) 270, 1097
SduI GDGCHC 3 cut(s) 152, 550, 1319
SfuI TTCGAA 1 cut(s) 427
SinI GGWCC 1 cut(s) 1368
SmiMI CAYNNNNRTG 2 cut(s) 371, 626
SmlI CTYRAG 3 cut(s) 143, 887, 1186
SmoI CTYRAG 3 cut(s) 143, 887, 1186
SpeI ACTAGT 1 cut(s) 586
Sse9I AATT 7 cut(s) 308, 667, 792, 815, 1047, 1326, 1376
SseBI AGGCCT 2 cut(s) 554, 1210
SsiI CCGC 3 cut(s) 659, 1299, 1353
SspI AATATT 1 cut(s) 357
SspMI CTAG 5 cut(s) 74, 587, 836, 1025, 1556
StuI AGGCCT 2 cut(s) 554, 1210
StyI CCWWGG 3 cut(s) 369, 780, 1071
TaaI ACNGT 4 cut(s) 406, 719, 913, 1552
TaiI ACGT 3 cut(s) 1281, 1517, 1544
TaqI TCGA 1 cut(s) 427
TasI AATT 7 cut(s) 308, 667, 792, 815, 1047, 1326, 1376
TatI WGTACW 4 cut(s) 3, 515, 855, 908
TfiI GAWTC 1 cut(s) 699
Tru1I TTAA 3 cut(s) 68, 948, 1562
Tru9I TTAA 3 cut(s) 68, 948, 1562
TscAI CASTG 4 cut(s) 918, 1045, 1324, 1347
TseI GCWGC 4 cut(s) 236, 656, 1232, 1485
TspDTI ATGAA 3 cut(s) 911, 1488, 1507
TspGWI ACGGA 1 cut(s) 426
TspRI CASTG 4 cut(s) 918, 1045, 1324, 1347
Van91I CCANNNNNTGG 1 cut(s) 87
VneI GTGCAC 1 cut(s) 1315
VpaK11BI GGWCC 1 cut(s) 1368
XapI RAATTY 1 cut(s) 1376
XspI CTAG 5 cut(s) 74, 587, 836, 1025, 1556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.