Rmu_sc0003673.1_g000004

Nodulin-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003673.1
OG0001224
Physical Location & Seq
Forward (+)
11368 .. 13144
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003673.1_g000004.1.cds

Sequence Viewer

Length: 1620 bp
atgtcttcatcctcatctaaagctttccaatggctaagccttgtgggcatgatatggcttcaatccataaacggaacaaacaccaccttccctgcttactcatcccaactcaagagcactctctccatctcccaactacaaatcaacaatctcgtcttcgcctccaacgcagggaaactctttggttggttttccggcattgctgctatttaccttcctctctggctagtcctcattatcggctcacttctcgggttgattggctacggtgtccaatttctattcgtaactaaccaaatctcatctccagcatattggcaaatattcttgctcagcatggtggccggaaatagtgtctgttggatcaacaccgtttgctatgttgtttgcattcgaaactttccgtttcaccaacaggttgctgtgggactaacaacaagttaccagggattgagtgcaaaaatctacacagatatcgttggcgctgctttttcttcttcacctcataagagagccaaggcctatcttcttctaaactctctcctgcctttactagtctgtgttgtagtggcatcatttgtgagagacattgatgtgggaagaggggagcccagaaatatggcagcggggttcaaattaatgtttgtggtaacaattgccacaggaatctatgctgtgatcaccagtttaggatcaatgtcgtctatccacttatcgccattgcacagtgtgataggtaccgcattgttcctactgatgcccttggtcgtcccaattggggaaaaaatgagagaaaaattatcaagatggaggagcctagacagagagaacagagtgcccaatttcagcacagatgatcagaaaggccttgagaacatagagagtggtgtagtgaaagagggagaagaagaggaacatagtacagtgcatgttcataatgaggttggtgaaatacaaattcgtcatgggatttgtgttagagaggagattggagtgaggttgatggtgaaaaggatagatttctggttatatttcctagtatatattttcagtgcaacaattgggcttgtgttcttggacaccttcggacagatagtagaatcaagaggctcatgtaggacttcttctctggtttctttatcttcttcattcgggttctttggccgtcttatgacttcacttctggactatttcttcccaagaaagtatatgatttcaaggcctgcattcctaatgacattagcggcaccaatagcaggagctttcttcttgcttctcaacccatctaacgtctcccttaccatcagttccgccatcataggagtgtgcactggagcaattacttctattgcagtgtccataaccacagagctattcgggaccaagaatttctcagtaaatcacaatgtggtggttgcgaatatctcaattgggtcgtttctttttggctactcatctgctcttgtctatcgcaaggaaggaaatgaagatggtagctgcttgggaatggcttgttacagaagcaccttcattatctggggtagtctttgtacgttagggactagtctagctttagtgctatatgcaagaacacgaatgttctactccaaaatatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nodulin-like

Protein Analysis

539

Amino Acids

59.17

Weight (kDa)

9.07

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 737
AccB1I GGYRCC 2 cut(s) 737, 1246
AciI CCGC 4 cut(s) 626, 741, 1244, 1311
AclWI GGATC 2 cut(s) 371, 700
AcoI YGGCCR 2 cut(s) 342, 1162
AcsI RAATTY 2 cut(s) 957, 1387
AdeI CACNNNGTG 2 cut(s) 730, 1408
AfaI GTAC 3 cut(s) 739, 922, 1552
AfiI CCNNNNNNNGG 3 cut(s) 171, 778, 1256
AgsI TTSAA 3 cut(s) 62, 634, 1218
AhlI ACTAGT 2 cut(s) 553, 1562
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 5 cut(s) 23, 1262, 1372, 1497, 1571
AluI AGCT 5 cut(s) 23, 1262, 1372, 1497, 1571
Alw21I GWGCWC 2 cut(s) 119, 1331
Alw26I GTCTC 2 cut(s) 579, 1297
Alw44I GTGCAC 1 cut(s) 1327
AlwI GGATC 2 cut(s) 371, 700
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 5 cut(s) 342, 519, 865, 1162, 1220
ApaLI GTGCAC 1 cut(s) 1327
ApeKI GCWGC 4 cut(s) 203, 485, 623, 1497
ApoI RAATTY 2 cut(s) 957, 1387
AseI ATTAAT 1 cut(s) 638
Asp718I GGTACC 1 cut(s) 737
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 1 cut(s) 1380
AsuHPI GGTGA 5 cut(s) 401, 492, 673, 959, 1018
AsuII TTCGAA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 1380
BaeGI GKGCMC 2 cut(s) 840, 1331
BanI GGYRCC 2 cut(s) 737, 1246
BanII GRGCYC 1 cut(s) 612
BarI GAAGNNNNNNTAC 2 cut(s) 1108, 1140
BbsI GAAGAC 1 cut(s) 148
Bbv12I GWGCWC 2 cut(s) 119, 1331
BbvI GCAGC 4 cut(s) 190, 472, 635, 1484
BccI CCATC 7 cut(s) 134, 801, 997, 1291, 1310, 1322, 1484
BceAI ACGGC 1 cut(s) 1149
BciT130I CCWGG 1 cut(s) 446
BclI TGATCA 2 cut(s) 678, 856
BcoDI GTCTC 2 cut(s) 579, 1297
BcuI ACTAGT 2 cut(s) 553, 1562
BfaI CTAG 6 cut(s) 227, 554, 818, 1037, 1563, 1568
BfoI RGCGCY 1 cut(s) 486
BglI GCCNNNNNGGC 1 cut(s) 45
BisI GCNGC 5 cut(s) 204, 486, 624, 1245, 1498
BlpI GCTNAGC 2 cut(s) 35, 332
BlsI GCNGC 5 cut(s) 205, 487, 625, 1246, 1499
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 1380
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 1 cut(s) 1380
BmiI GGNNCC 5 cut(s) 609, 739, 815, 1248, 1381
BmrFI CCNGG 1 cut(s) 446
BmsI GCATC 2 cut(s) 581, 747
BpiI GAAGAC 1 cut(s) 148
BpmI CTGGAG 2 cut(s) 291, 1353
Bpu1102I GCTNAGC 2 cut(s) 35, 332
Bpu14I TTCGAA 1 cut(s) 394
BpuEI CTTGAG 2 cut(s) 95, 890
BsaJI CCNNGG 3 cut(s) 445, 516, 762
Bsc4I CCNNNNNNNGG 3 cut(s) 171, 778, 1256
Bse1I ACTGG 2 cut(s) 684, 1336
Bse3DI GCAATG 2 cut(s) 198, 719
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 3 cut(s) 445, 516, 762
BseGI GGATG 2 cut(s) 8, 101
BseLI CCNNNNNNNGG 3 cut(s) 171, 778, 1256
BseMI GCAATG 2 cut(s) 198, 719
BseMII CTCAG 2 cut(s) 346, 1407
BseNI ACTGG 2 cut(s) 684, 1336
BseRI GAGGAG 2 cut(s) 826, 998
BseSI GKGCMC 2 cut(s) 840, 1331
BseXI GCAGC 4 cut(s) 190, 472, 635, 1484
BshFI GGCC 5 cut(s) 344, 521, 867, 1164, 1222
BshNI GGYRCC 2 cut(s) 737, 1246
BsiHKAI GWGCWC 2 cut(s) 119, 1331
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 2 cut(s) 195, 345
BslFI GGGAC 4 cut(s) 441, 755, 1393, 1573
BslI CCNNNNNNNGG 3 cut(s) 171, 778, 1256
BsmAI GTCTC 2 cut(s) 579, 1297
BsmBI CGTCTC 1 cut(s) 1297
BsmFI GGGAC 4 cut(s) 441, 755, 1393, 1573
BsmI GAATGC 2 cut(s) 390, 1226
BsnI GGCC 5 cut(s) 344, 521, 867, 1164, 1222
BsoBI CYCGRG 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 394
Bsp1286I GDGCHC 4 cut(s) 119, 612, 840, 1331
Bsp143I GATC 4 cut(s) 363, 678, 692, 856
Bsp1720I GCTNAGC 2 cut(s) 35, 332
BspACI CCGC 4 cut(s) 626, 741, 1244, 1311
BspANI GGCC 5 cut(s) 344, 521, 867, 1164, 1222
BspCNI CTCAG 2 cut(s) 345, 1406
BspLI GGNNCC 5 cut(s) 609, 739, 815, 1248, 1381
BspPI GGATC 2 cut(s) 371, 700
BspT104I TTCGAA 1 cut(s) 394
BspT107I GGYRCC 2 cut(s) 737, 1246
BsrDI GCAATG 2 cut(s) 198, 719
BsrI ACTGG 2 cut(s) 684, 1336
BssECI CCNNGG 3 cut(s) 445, 516, 762
BssMI GATC 4 cut(s) 363, 678, 692, 856
BssT1I CCWWGG 2 cut(s) 516, 762
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 4 cut(s) 269, 373, 728, 925
Bst6I CTCTTC 2 cut(s) 595, 903
BstBI TTCGAA 1 cut(s) 394
BstC8I GCNNGC 1 cut(s) 1224
BstDEI CTNAG 3 cut(s) 35, 332, 1393
BstF5I GGATG 2 cut(s) 8, 101
BstH2I RGCGCY 1 cut(s) 486
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 4 cut(s) 366, 681, 695, 859
BstMAI GTCTC 2 cut(s) 579, 1297
BstMBI GATC 4 cut(s) 363, 678, 692, 856
BstMWI GCNNNNNNNGC 3 cut(s) 45, 167, 1253
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 1 cut(s) 932
BstSCI CCNGG 1 cut(s) 444
BstSLI GKGCMC 2 cut(s) 840, 1331
BstV1I GCAGC 4 cut(s) 190, 472, 635, 1484
BstV2I GAAGAC 1 cut(s) 148
BstXI CCANNNNNNTGG 2 cut(s) 315, 619
BsuRI GGCC 5 cut(s) 344, 521, 867, 1164, 1222
BtsCI GGATG 2 cut(s) 8, 101
BtsI GCAGTG 1 cut(s) 1359
BtsIMutI CAGTG 5 cut(s) 733, 930, 1057, 1329, 1359
Cac8I GCNNGC 1 cut(s) 1224
CfoI GCGC 1 cut(s) 485
Cfr13I GGNCC 1 cut(s) 1380
Csp6I GTAC 3 cut(s) 738, 921, 1551
CviAII CATG 5 cut(s) 49, 337, 929, 965, 1113
CviQI GTAC 3 cut(s) 738, 921, 1551
DdeI CTNAG 3 cut(s) 35, 332, 1393
DpnI GATC 4 cut(s) 365, 680, 694, 858
DpnII GATC 4 cut(s) 363, 678, 692, 856
DraIII CACNNNGTG 2 cut(s) 730, 1408
EaeI YGGCCR 2 cut(s) 342, 1162
Eam1104I CTCTTC 2 cut(s) 595, 903
EarI CTCTTC 2 cut(s) 595, 903
EciI GGCGGA 1 cut(s) 1300
Eco130I CCWWGG 2 cut(s) 516, 762
Eco147I AGGCCT 3 cut(s) 521, 867, 1222
Eco24I GRGCYC 1 cut(s) 612
Eco32I GATATC 1 cut(s) 475
Eco47I GGWCC 1 cut(s) 1380
Eco88I CYCGRG 1 cut(s) 251
EcoRII CCWGG 1 cut(s) 444
EcoRV GATATC 1 cut(s) 475
EcoT14I CCWWGG 2 cut(s) 516, 762
EcoT38I GRGCYC 1 cut(s) 612
ErhI CCWWGG 2 cut(s) 516, 762
Esp3I CGTCTC 1 cut(s) 1297
FaeI CATG 5 cut(s) 52, 340, 932, 968, 1116
FaqI GGGAC 4 cut(s) 441, 755, 1393, 1573
FatI CATG 5 cut(s) 48, 336, 928, 964, 1112
FauI CCCGC 1 cut(s) 619
FbaI TGATCA 2 cut(s) 678, 856
Fnu4HI GCNGC 5 cut(s) 204, 486, 624, 1245, 1498
FokI GGATG 1 cut(s) 88
FriOI GRGCYC 1 cut(s) 612
Fsp4HI GCNGC 5 cut(s) 204, 486, 624, 1245, 1498
FspBI CTAG 6 cut(s) 227, 554, 818, 1037, 1563, 1568
GlaI GCGC 1 cut(s) 484
GluI GCNGC 5 cut(s) 204, 486, 624, 1245, 1498
GsuI CTGGAG 2 cut(s) 291, 1353
HaeII RGCGCY 1 cut(s) 486
HaeIII GGCC 5 cut(s) 344, 521, 867, 1164, 1222
HapII CCGG 2 cut(s) 195, 345
HhaI GCGC 1 cut(s) 485
Hin1II CATG 5 cut(s) 52, 340, 932, 968, 1116
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HindIII AAGCTT 1 cut(s) 21
HinfI GANTC 2 cut(s) 666, 1100
HpaII CCGG 2 cut(s) 195, 345
HphI GGTGA 5 cut(s) 401, 492, 673, 959, 1018
Hpy166II GTNNAC 1 cut(s) 1329
Hpy188I TCNGA 2 cut(s) 861, 1088
Hpy188III TCNNGA 5 cut(s) 112, 804, 1104, 1184, 1378
Hpy8I GTNNAC 1 cut(s) 1329
HpyAV CCTTC 5 cut(s) 97, 224, 1093, 1472, 1537
HpyCH4III ACNGT 4 cut(s) 269, 373, 728, 925
HpyCH4IV ACGT 2 cut(s) 1290, 1553
HpyCH4V TGCA 9 cut(s) 390, 458, 724, 928, 1055, 1226, 1329, 1352, 1586
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 167, 1253
HpyF3I CTNAG 3 cut(s) 35, 332, 1393
HpySE526I ACGT 2 cut(s) 1290, 1553
Hsp92II CATG 5 cut(s) 52, 340, 932, 968, 1116
HspAI GCGC 1 cut(s) 483
KpnI GGTACC 1 cut(s) 741
Ksp22I TGATCA 2 cut(s) 678, 856
Kzo9I GATC 4 cut(s) 363, 678, 692, 856
LmnI GCTCC 4 cut(s) 607, 813, 1259, 1334
Lsp1109I GCAGC 4 cut(s) 190, 472, 635, 1484
LweI GCATC 2 cut(s) 581, 747
MaeI CTAG 6 cut(s) 227, 554, 818, 1037, 1563, 1568
MaeII ACGT 2 cut(s) 1290, 1553
MaeIII GTNAC 4 cut(s) 286, 440, 649, 1514
MalI GATC 4 cut(s) 365, 680, 694, 858
MboI GATC 4 cut(s) 363, 678, 692, 856
MfeI CAATTG 4 cut(s) 654, 774, 1059, 1428
MhlI GDGCHC 4 cut(s) 119, 612, 840, 1331
MmeI TCCRAC 2 cut(s) 189, 341
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 2 cut(s) 593, 1322
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 2 cut(s) 195, 345
MspR9I CCNGG 1 cut(s) 446
MunI CAATTG 4 cut(s) 654, 774, 1059, 1428
Mva1269I GAATGC 2 cut(s) 390, 1226
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 3 cut(s) 45, 167, 1253
NdeII GATC 4 cut(s) 363, 678, 692, 856
NlaIII CATG 5 cut(s) 52, 340, 932, 968, 1116
NlaIV GGNNCC 5 cut(s) 609, 739, 815, 1248, 1381
NspI RCATGY 1 cut(s) 932
NspV TTCGAA 1 cut(s) 394
PceI AGGCCT 3 cut(s) 521, 867, 1222
PctI GAATGC 2 cut(s) 390, 1226
PfeI GAWTC 2 cut(s) 666, 1100
PkrI GCNGC 5 cut(s) 205, 487, 625, 1246, 1499
PshBI ATTAAT 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 5 cut(s) 609, 739, 815, 1248, 1381
PspPI GGNCC 1 cut(s) 1380
RsaI GTAC 3 cut(s) 739, 922, 1552
RsaNI GTAC 3 cut(s) 738, 921, 1551
RseI CAYNNNNRTG 2 cut(s) 593, 1322
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 5 cut(s) 204, 486, 624, 1245, 1498
Sau3AI GATC 4 cut(s) 363, 678, 692, 856
Sau96I GGNCC 1 cut(s) 1380
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 4 cut(s) 119, 612, 840, 1331
SfaNI GCATC 2 cut(s) 581, 747
SfuI TTCGAA 1 cut(s) 394
SinI GGWCC 1 cut(s) 1380
SmiMI CAYNNNNRTG 2 cut(s) 593, 1322
SmlI CTYRAG 2 cut(s) 110, 869
SmoI CTYRAG 2 cut(s) 110, 869
SpeI ACTAGT 2 cut(s) 553, 1562
SseBI AGGCCT 3 cut(s) 521, 867, 1222
SsiI CCGC 4 cut(s) 626, 741, 1244, 1311
SspI AATATT 1 cut(s) 324
SspMI CTAG 6 cut(s) 227, 554, 818, 1037, 1563, 1568
StuI AGGCCT 3 cut(s) 521, 867, 1222
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 2 cut(s) 516, 762
TaaI ACNGT 4 cut(s) 269, 373, 728, 925
TaiI ACGT 2 cut(s) 1293, 1556
TaqI TCGA 1 cut(s) 394
TatI WGTACW 1 cut(s) 920
TauI GCSGC 1 cut(s) 1247
TfiI GAWTC 2 cut(s) 666, 1100
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 5 cut(s) 733, 930, 1057, 1336, 1359
TseI GCWGC 4 cut(s) 203, 485, 623, 1497
TspDTI ATGAA 4 cut(s) 923, 1137, 1500, 1519
TspGWI ACGGA 2 cut(s) 87, 393
TspRI CASTG 5 cut(s) 733, 930, 1057, 1336, 1359
VneI GTGCAC 1 cut(s) 1327
VpaK11BI GGWCC 1 cut(s) 1380
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 2 cut(s) 957, 1387
XceI RCATGY 1 cut(s) 932
XspI CTAG 6 cut(s) 227, 554, 818, 1037, 1563, 1568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.