Rroxscaffold_1G00009070

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
11422001 .. 11423743
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009070.1

Sequence Viewer

Length: 1407 bp
ATGTCTTCCTCATCAAAAGCTTTCCAATGGTTAAGCCTAGTGGCCATCATATGGCTTCAGTCCATAAATGGAACAAACACCACCTTCCCTGCTTACTCATCCCAACTCAAGAACACTCTATCCTTGTCCCAACTACAAATCAACAATCTCGTCTTTGCCTCCGACGCAGGGAAGCTCTTTGGTTGGTTTTCCGGCATTGCTGCTATTTACCTTCCCCTTTGGCGAGTCCTCATGATCGGCTCACTTCTCGGTTTGATTGGCTACGGCGTCCAATTTCTATTCGTAACAGACAAAATCTCGTCCCCAGCATATTGGCAAATATTCCTGCTCACCATGGTGGCCGGAAATAGCGTCTGTTGGATCAACACCGTCTGCTATGTTGTTAGTATTCGAAACTTTCCGTTTCACCGACAGGTTGCTGTGGGACTAACAACAAGTTATCAAGGATTGAGTGCAAAAATCTACACAGATATTGTTAGTACTGCTTTTTCTTCTTCACCTCATAAAAGAGCACAGGCCTACCTTCTTCTAAACTCTCTCCTGCCTTTACTAGTCTGTGTTGTAGTGGCACCATTGGTGAGAAACATTGATGTAGGAACGGGGGAGCCGAGAAACATGGCAGCGGGGTTCAATTTGATGTTTGTGATAACCATTGCCACCGGAATCTATGCCGTCATCACCAGTTTAGGATCAATGATCGGCTTAGACAGAATGATAGGTACCGGAGTGTTCCTACTGATCCCCTTGGTAATCCCAATTGTAGTAAAAATCAGAGAAAAATTATCAAGAAGATGGAGCCTAGACAGAGAGAACAGAGTGTACAATGTCAGCATAGATGATCAGAATGGCCTTGAGAGCATAGAGAGTGGTGTAGTTAAACAGGAAGAAGAAGAGGAACATAGTACAGTGCAGGTTCATGATGAGGTTGGTGAGGTACAGGTTAATCATGGGATTGGTGTTAGAGAGGAGATTGGAGTGAAGTTGATGAAGCAAGTATATGATTTCAAGGCCTGCATTCCTAATGGCATTAGCAGCACCAATGGCAGGAGTTTTTTTTTGCTTCTCAACCCAGCTAACGTCTCTCTTATCATCAGTACCGCCATTATAGGAGTGTGCACTGGAGCAATTACTTCTATTGCAGTGTCCATAACCACAGAGCTATTCGGGACCAAGAAATTCTCAATAAATCACAATGTGGTGGTTGCGAATATCTCAGTCGGGTCGTTTCTTTTTGGCTACTCATCTGCTCTTCTTTATCGCAAGGAAGGAGATGAAGATGGTAGCTGCTTGGGAATGGCTTGTTACAGAAGCACCTTCATTATCTGGGGTAGTCTCTGTACGTTAGGGACTGTCCTAGCTTTAACGCTATATGCAAGAACAAGAAAGTTCTACTCCAAGAGATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

468

Amino Acids

51.23

Weight (kDa)

8.9

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nodulin-like PF06813 9 - 256 3.2e-73 Nodulin-like
NFD4_C PF23262 346 - 465 4e-55 NFD4, C-terminal domain
MFS_1 PF07690 352 - 462 6.8e-06 Major Facilitator Superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 901
Acc65I GGTACC 1 cut(s) 719
AccB1I GGYRCC 2 cut(s) 568, 719
AccB7I CCANNNNNTGG 1 cut(s) 51
AciI CCGC 2 cut(s) 623, 1098
AclWI GGATC 3 cut(s) 368, 697, 733
AcoI YGGCCR 2 cut(s) 42, 339
AcsI RAATTY 1 cut(s) 1175
AcuI CTGAAG 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 1195
AfaI GTAC 7 cut(s) 481, 721, 821, 904, 936, 1096, 1339
AfiI CCNNNNNNNGG 3 cut(s) 51, 168, 1044
AgsI TTSAA 2 cut(s) 631, 1006
AhlI ACTAGT 1 cut(s) 550
AleI CACNNNNGTG 1 cut(s) 335
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 6 cut(s) 20, 175, 1073, 1159, 1284, 1358
AluI AGCT 6 cut(s) 20, 175, 1073, 1159, 1284, 1358
Alw21I GWGCWC 2 cut(s) 514, 1118
Alw26I GTCTC 2 cut(s) 1084, 1337
Alw44I GTGCAC 1 cut(s) 1114
AlwI GGATC 3 cut(s) 368, 697, 733
AoxI GGCC 5 cut(s) 42, 339, 516, 847, 1008
ApaLI GTGCAC 1 cut(s) 1114
ApeKI GCWGC 4 cut(s) 200, 620, 1032, 1284
ApoI RAATTY 1 cut(s) 1175
Asp718I GGTACC 1 cut(s) 719
AspS9I GGNCC 1 cut(s) 1167
AsuHPI GGTGA 6 cut(s) 322, 398, 489, 589, 670, 941
AsuII TTCGAA 1 cut(s) 391
AvaII GGWCC 1 cut(s) 1167
BaeGI GKGCMC 1 cut(s) 1118
BaeI ACNNNNGTAYC 2 cut(s) 711, 744
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 2 cut(s) 568, 719
Bbv12I GWGCWC 2 cut(s) 514, 1118
BbvI GCAGC 4 cut(s) 187, 632, 1044, 1271
BccI CCATC 3 cut(s) 53, 786, 1271
BceAI ACGGC 2 cut(s) 280, 656
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 2 cut(s) 1084, 1337
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 4 cut(s) 38, 551, 800, 1355
BfuAI ACCTGC 1 cut(s) 901
BisI GCNGC 4 cut(s) 201, 621, 1033, 1285
BlsI GCNGC 4 cut(s) 202, 622, 1034, 1286
BmcAI AGTACT 1 cut(s) 481
Bme18I GGWCC 1 cut(s) 1167
BmgT120I GGNCC 1 cut(s) 1167
BmiI GGNNCC 5 cut(s) 570, 606, 721, 797, 1168
BpmI CTGGAG 1 cut(s) 1140
Bpu14I TTCGAA 1 cut(s) 391
BpuEI CTTGAG 2 cut(s) 92, 872
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 333, 744
BsaWI WCCGGW 2 cut(s) 659, 722
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 168, 1044
Bse1I ACTGG 2 cut(s) 681, 1123
Bse3DI GCAATG 2 cut(s) 195, 651
BseDI CCNNGG 2 cut(s) 333, 744
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 3 cut(s) 51, 168, 1044
BseMI GCAATG 2 cut(s) 195, 651
BseMII CTCAG 1 cut(s) 1227
BseNI ACTGG 2 cut(s) 681, 1123
BseRI GAGGAG 1 cut(s) 980
BseSI GKGCMC 1 cut(s) 1118
BseXI GCAGC 4 cut(s) 187, 632, 1044, 1271
BseYI CCCAGC 2 cut(s) 304, 1069
BsgI GTGCAG 1 cut(s) 929
BshFI GGCC 5 cut(s) 44, 341, 518, 849, 1010
BshNI GGYRCC 2 cut(s) 568, 719
BsiHKAI GWGCWC 2 cut(s) 514, 1118
BsiSI CCGG 4 cut(s) 192, 342, 660, 723
BslFI GGGAC 5 cut(s) 112, 286, 438, 1180, 1360
BslI CCNNNNNNNGG 3 cut(s) 51, 168, 1044
BsmAI GTCTC 2 cut(s) 1084, 1337
BsmBI CGTCTC 1 cut(s) 1084
BsmFI GGGAC 5 cut(s) 112, 286, 438, 1180, 1360
BsmI GAATGC 1 cut(s) 1014
BsnI GGCC 5 cut(s) 44, 341, 518, 849, 1010
Bsp119I TTCGAA 1 cut(s) 391
Bsp1286I GDGCHC 2 cut(s) 514, 1118
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1400
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 2 cut(s) 623, 1098
BspANI GGCC 5 cut(s) 44, 341, 518, 849, 1010
BspCNI CTCAG 1 cut(s) 1226
BspHI TCATGA 2 cut(s) 231, 916
BspLI GGNNCC 5 cut(s) 570, 606, 721, 797, 1168
BspMI ACCTGC 1 cut(s) 901
BspPI GGATC 3 cut(s) 368, 697, 733
BspQI GCTCTTC 1 cut(s) 1254
BspT104I TTCGAA 1 cut(s) 391
BspT107I GGYRCC 2 cut(s) 568, 719
BsrDI GCAATG 2 cut(s) 195, 651
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 2 cut(s) 681, 1123
BssECI CCNNGG 2 cut(s) 333, 744
BssMI GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1400
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 333, 744
Bst4CI ACNGT 3 cut(s) 370, 907, 1351
Bst6I CTCTTC 2 cut(s) 885, 1254
BstACI GRCGYC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 819
BstBI TTCGAA 1 cut(s) 391
BstC8I GCNNGC 1 cut(s) 1012
BstDEI CTNAG 2 cut(s) 703, 1213
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 7 cut(s) 237, 363, 692, 699, 741, 841, 1403
BstMAI GTCTC 2 cut(s) 1084, 1337
BstMBI GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1400
BstMWI GCNNNNNNNGC 4 cut(s) 164, 855, 1032, 1041
BstSLI GKGCMC 1 cut(s) 1118
BstV1I GCAGC 4 cut(s) 187, 632, 1044, 1271
BstXI CCANNNNNNTGG 1 cut(s) 312
BsuRI GGCC 5 cut(s) 44, 341, 518, 849, 1010
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 98
BtsI GCAGTG 1 cut(s) 1146
BtsIMutI CAGTG 3 cut(s) 912, 1116, 1146
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 1 cut(s) 1012
CciI TCATGA 2 cut(s) 231, 916
Cfr13I GGNCC 1 cut(s) 1167
CseI GACGC 3 cut(s) 173, 256, 340
Csp6I GTAC 7 cut(s) 480, 720, 820, 903, 935, 1095, 1338
CviAII CATG 5 cut(s) 232, 334, 616, 917, 947
CviQI GTAC 7 cut(s) 480, 720, 820, 903, 935, 1095, 1338
DdeI CTNAG 2 cut(s) 703, 1213
DpnI GATC 7 cut(s) 236, 362, 691, 698, 740, 840, 1402
DpnII GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1400
DraIII CACNNNGTG 1 cut(s) 1195
EaeI YGGCCR 2 cut(s) 42, 339
Eam1104I CTCTTC 2 cut(s) 885, 1254
EarI CTCTTC 2 cut(s) 885, 1254
Eco130I CCWWGG 2 cut(s) 333, 744
Eco147I AGGCCT 2 cut(s) 518, 1010
Eco47I GGWCC 1 cut(s) 1167
Eco57I CTGAAG 1 cut(s) 41
EcoT14I CCWWGG 2 cut(s) 333, 744
ErhI CCWWGG 2 cut(s) 333, 744
Esp3I CGTCTC 1 cut(s) 1084
FaeI CATG 5 cut(s) 235, 337, 619, 920, 950
FaqI GGGAC 5 cut(s) 112, 286, 438, 1180, 1360
FatI CATG 5 cut(s) 231, 333, 615, 916, 946
FauI CCCGC 1 cut(s) 616
FauNDI CATATG 1 cut(s) 50
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 201, 621, 1033, 1285
FokI GGATG 1 cut(s) 85
Fsp4HI GCNGC 4 cut(s) 201, 621, 1033, 1285
FspBI CTAG 4 cut(s) 38, 551, 800, 1355
GluI GCNGC 4 cut(s) 201, 621, 1033, 1285
GsaI CCCAGC 2 cut(s) 308, 1073
GsuI CTGGAG 1 cut(s) 1140
HaeIII GGCC 5 cut(s) 44, 341, 518, 849, 1010
HapII CCGG 4 cut(s) 192, 342, 660, 723
HgaI GACGC 3 cut(s) 173, 256, 340
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 235, 337, 619, 920, 950
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 225, 663
HpaII CCGG 4 cut(s) 192, 342, 660, 723
HphI GGTGA 6 cut(s) 322, 398, 489, 589, 670, 941
Hpy166II GTNNAC 2 cut(s) 820, 1116
Hpy188I TCNGA 3 cut(s) 163, 773, 843
Hpy188III TCNNGA 5 cut(s) 109, 232, 786, 917, 1165
Hpy8I GTNNAC 2 cut(s) 820, 1116
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 5 cut(s) 94, 221, 533, 1259, 1324
HpyCH4III ACNGT 3 cut(s) 370, 907, 1351
HpyCH4IV ACGT 2 cut(s) 1077, 1340
HpyCH4V TGCA 6 cut(s) 455, 910, 1014, 1116, 1139, 1373
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 855, 1032, 1041
HpyF3I CTNAG 2 cut(s) 703, 1213
HpySE526I ACGT 2 cut(s) 1077, 1340
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 235, 337, 619, 920, 950
KpnI GGTACC 1 cut(s) 723
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1400
LguI GCTCTTC 1 cut(s) 1254
LmnI GCTCC 3 cut(s) 604, 795, 1121
Lsp1109I GCAGC 4 cut(s) 187, 632, 1044, 1271
MaeI CTAG 4 cut(s) 38, 551, 800, 1355
MaeII ACGT 2 cut(s) 1077, 1340
MaeIII GTNAC 2 cut(s) 283, 1301
MalI GATC 7 cut(s) 236, 362, 691, 698, 740, 840, 1402
MboI GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1400
MboII GAAGA 9 cut(s) 483, 486, 518, 801, 896, 899, 902, 1241, 1286
MfeI CAATTG 1 cut(s) 756
MhlI GDGCHC 2 cut(s) 514, 1118
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 6 cut(s) 272, 631, 756, 779, 1125, 1175
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 2 cut(s) 186, 338
MnlI CCTC 8 cut(s) 19, 169, 239, 510, 886, 916, 925, 958
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 4 cut(s) 32, 876, 942, 1361
MslI CAYNNNNRTG 1 cut(s) 335
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 623
MspI CCGG 4 cut(s) 192, 342, 660, 723
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 1 cut(s) 1014
MwoI GCNNNNNNNGC 4 cut(s) 164, 855, 1032, 1041
NcoI CCATGG 1 cut(s) 333
NdeI CATATG 1 cut(s) 50
NdeII GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1400
NlaIII CATG 5 cut(s) 235, 337, 619, 920, 950
NlaIV GGNNCC 5 cut(s) 570, 606, 721, 797, 1168
NmeAIII GCCGAG 1 cut(s) 633
NspV TTCGAA 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 335
PagI TCATGA 2 cut(s) 231, 916
PceI AGGCCT 2 cut(s) 518, 1010
PciSI GCTCTTC 1 cut(s) 1254
PcsI WCGNNNNNNNCGW 1 cut(s) 605
PctI GAATGC 1 cut(s) 1014
PfeI GAWTC 1 cut(s) 663
PflMI CCANNNNNTGG 1 cut(s) 51
PkrI GCNGC 4 cut(s) 202, 622, 1034, 1286
PleI GAGTC 1 cut(s) 233
PpsI GAGTC 1 cut(s) 233
PspFI CCCAGC 2 cut(s) 304, 1069
PspN4I GGNNCC 5 cut(s) 570, 606, 721, 797, 1168
PspPI GGNCC 1 cut(s) 1167
PsrI GAACNNNNNNTAC 2 cut(s) 803, 835
RsaI GTAC 7 cut(s) 481, 721, 821, 904, 936, 1096, 1339
RsaNI GTAC 7 cut(s) 480, 720, 820, 903, 935, 1095, 1338
RseI CAYNNNNRTG 1 cut(s) 335
SapI GCTCTTC 1 cut(s) 1254
SaqAI TTAA 4 cut(s) 32, 876, 942, 1361
SatI GCNGC 4 cut(s) 201, 621, 1033, 1285
Sau3AI GATC 7 cut(s) 234, 360, 689, 696, 738, 838, 1400
Sau96I GGNCC 1 cut(s) 1167
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 1 cut(s) 234
SduI GDGCHC 2 cut(s) 514, 1118
SfuI TTCGAA 1 cut(s) 391
SinI GGWCC 1 cut(s) 1167
SmiMI CAYNNNNRTG 1 cut(s) 335
SmlI CTYRAG 2 cut(s) 107, 851
SmoI CTYRAG 2 cut(s) 107, 851
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 6 cut(s) 272, 631, 756, 779, 1125, 1175
SseBI AGGCCT 2 cut(s) 518, 1010
SsiI CCGC 2 cut(s) 623, 1098
SspI AATATT 1 cut(s) 321
SspMI CTAG 4 cut(s) 38, 551, 800, 1355
StuI AGGCCT 2 cut(s) 518, 1010
StyI CCWWGG 2 cut(s) 333, 744
TaaI ACNGT 3 cut(s) 370, 907, 1351
TaiI ACGT 2 cut(s) 1080, 1343
TaqI TCGA 1 cut(s) 391
TasI AATT 6 cut(s) 272, 631, 756, 779, 1125, 1175
TatI WGTACW 3 cut(s) 479, 819, 902
TfiI GAWTC 1 cut(s) 663
Tru1I TTAA 4 cut(s) 32, 876, 942, 1361
Tru9I TTAA 4 cut(s) 32, 876, 942, 1361
TscAI CASTG 3 cut(s) 912, 1123, 1146
TseI GCWGC 4 cut(s) 200, 620, 1032, 1284
TspDTI ATGAA 4 cut(s) 905, 1001, 1287, 1306
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 3 cut(s) 912, 1123, 1146
Van91I CCANNNNNTGG 1 cut(s) 51
VneI GTGCAC 1 cut(s) 1114
VpaK11BI GGWCC 1 cut(s) 1167
XapI RAATTY 1 cut(s) 1175
XspI CTAG 4 cut(s) 38, 551, 800, 1355
ZrmI AGTACT 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.