Rmu_sc0010048.1_g000001

Nodulin-like

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010048.1
Physical Location & Seq
Reverse (-)
6483 .. 8231
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010048.1_g000001.1.cds

Sequence Viewer

Length: 1602 bp
atgtcttcctcatcgaaagctttccaatggttaagcctagtgggcatcatatggcttcaatccataaatggaacaaacacaaccttccctgcttactcatcccaactcaagaacactctctccatgtcccaaatacaaatcaacaatcttgtcttcgcctccgacgcagggaaactctttggttggttttccggcattgctgctatttaccttcccctttggctagtcctcataatcggatcacttctcgggttgattggctacggcgtccaatttctattcgtcacaaaccaaatctcatctccagcatattggcaaatattcttgctcaccatggtggcaggcaatagcgtctgttggatcaataccgtttgctatgttgttagtattcgaaactttccgcttctccaacaggttgctgtgggactaacaacaagttatcaaggattgagtgcaaaaatctacacagatattgtcagtgctgccttttcttcttcacctcataagagagcacaggcctatcttcttctaaactctctcctgcctttactagtctgtgctgtagtggcaccattggtgagaaacattgatgtgggaacaggggagccaagaaacatggcaacggggttcaatttaatgtttgtgataaccattgccaccggaatttatgccgtcatcaccagtttaggatcaatgatcggcttagacagagtgataggcaccggagtattcctactgatgcccttggtaatcccaattgtggaaaaaatcagagaaaaaatatcaagaagatggagcctagacagagagaacagagtgtacaatgtcagcatagatgatcagaatggcctggagagcatagagagtggtgaagtgaaagaggaagaagaggagcatagtacagtgcaggttcacaatgaggttggtgaagtacaggttcatcatgggattggtgttaaagaggagattggagtgacgttgatggtgcaaaggatagatttctggttatatttcctagtttattttttcagtgcaacaattgggctcgtgttcttgaacaccttgggacagatagcagagtcaagaggctcatctaagacttcttctctggtttctttatcttcttccttcgggttctttggccgtctcatgccttcacttctggattatttcttcgcaagaagcaagtatatgatttcaaggcctgcattcgtaatggcactagcggcaccaatagcaggagtttttttcttgcttctcaacccagctaacgtctctcttatcatcagtaccgccattataggagtgtgcactggagcaattacttctattgcagtgtccataaccacagagctattcgggaccaaaaaattctcaataaatcacaatgtggtggttgcgaatatctcagtcgggtcgtttctttttggctactcatctgctcttctttattgtaaggaaggaaatgaagatggtagctgcttgggaatggcttgttacagaatcaccttcattatctggggtagtctttgtacgtttgggactgtcctagctttaacgctatatgcaagaacaagaaagttctactccaaaagatcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

533

Amino Acids

58.35

Weight (kDa)

8.66

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 898
AccB1I GGYRCC 3 cut(s) 568, 719, 1228
AciI CCGC 3 cut(s) 401, 1226, 1293
AclWI GGATC 3 cut(s) 247, 368, 697
AcoI YGGCCR 1 cut(s) 1141
AcsI RAATTY 2 cut(s) 663, 1370
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 1390
AfaI GTAC 5 cut(s) 821, 901, 933, 1291, 1534
AfiI CCNNNNNNNGG 3 cut(s) 168, 760, 1238
AgsI TTSAA 4 cut(s) 59, 631, 1057, 1200
AhlI ACTAGT 1 cut(s) 550
AjnI CCWGG 1 cut(s) 849
AleI CACNNNNGTG 1 cut(s) 335
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 5 cut(s) 20, 1268, 1354, 1479, 1553
AluI AGCT 5 cut(s) 20, 1268, 1354, 1479, 1553
Alw21I GWGCWC 2 cut(s) 514, 1313
Alw26I GTCTC 2 cut(s) 1151, 1279
Alw44I GTGCAC 1 cut(s) 1309
AlwI GGATC 3 cut(s) 247, 368, 697
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 4 cut(s) 516, 847, 1141, 1202
ApaLI GTGCAC 1 cut(s) 1309
ApeKI GCWGC 3 cut(s) 200, 482, 1479
ApoI RAATTY 2 cut(s) 663, 1370
Asp700I GAANNNNTTC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 1362
AsuHPI GGTGA 7 cut(s) 322, 489, 589, 670, 881, 938, 1498
AsuII TTCGAA 1 cut(s) 391
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 1362
BaeGI GKGCMC 1 cut(s) 1313
BanI GGYRCC 3 cut(s) 568, 719, 1228
BanII GRGCYC 1 cut(s) 1047
BauI CACGAG 1 cut(s) 1046
BbsI GAAGAC 1 cut(s) 145
Bbv12I GWGCWC 2 cut(s) 514, 1313
BbvI GCAGC 3 cut(s) 187, 469, 1466
BccI CCATC 3 cut(s) 786, 976, 1466
BceAI ACGGC 3 cut(s) 280, 656, 1128
BciT130I CCWGG 1 cut(s) 851
BclI TGATCA 1 cut(s) 838
BcoDI GTCTC 2 cut(s) 1151, 1279
BcuI ACTAGT 1 cut(s) 550
BfaI CTAG 7 cut(s) 38, 224, 551, 800, 1016, 1223, 1550
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 898
BglI GCCNNNNNGGC 1 cut(s) 42
BisI GCNGC 4 cut(s) 201, 483, 1227, 1480
BlsI GCNGC 4 cut(s) 202, 484, 1228, 1481
Bme1390I CCNGG 1 cut(s) 851
Bme18I GGWCC 1 cut(s) 1362
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 1362
BmiI GGNNCC 6 cut(s) 570, 606, 721, 797, 1230, 1363
BmrFI CCNGG 1 cut(s) 851
BmsI GCATC 2 cut(s) 54, 729
BpiI GAAGAC 1 cut(s) 145
BpmI CTGGAG 3 cut(s) 288, 872, 1335
Bpu14I TTCGAA 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 333, 744, 1062
BsaWI WCCGGW 2 cut(s) 659, 722
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 3 cut(s) 168, 760, 1238
Bse1I ACTGG 2 cut(s) 681, 1318
Bse3DI GCAATG 2 cut(s) 195, 651
BseBI CCWGG 1 cut(s) 851
BseDI CCNNGG 3 cut(s) 333, 744, 1062
BseGI GGATG 1 cut(s) 98
BseLI CCNNNNNNNGG 3 cut(s) 168, 760, 1238
BseMI GCAATG 2 cut(s) 195, 651
BseMII CTCAG 1 cut(s) 1422
BseNI ACTGG 2 cut(s) 681, 1318
BseRI GAGGAG 2 cut(s) 905, 977
BseSI GKGCMC 1 cut(s) 1313
BseXI GCAGC 3 cut(s) 187, 469, 1466
BseYI CCCAGC 1 cut(s) 1264
BsgI GTGCAG 1 cut(s) 926
BshFI GGCC 4 cut(s) 518, 849, 1143, 1204
BshNI GGYRCC 3 cut(s) 568, 719, 1228
BsiHKAI GWGCWC 2 cut(s) 514, 1313
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 3 cut(s) 192, 660, 723
BslFI GGGAC 5 cut(s) 112, 438, 1080, 1375, 1555
BslI CCNNNNNNNGG 3 cut(s) 168, 760, 1238
BsmAI GTCTC 2 cut(s) 1151, 1279
BsmBI CGTCTC 2 cut(s) 1151, 1279
BsmFI GGGAC 5 cut(s) 112, 438, 1080, 1375, 1555
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 4 cut(s) 518, 849, 1143, 1204
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 391
Bsp1286I GDGCHC 3 cut(s) 514, 1047, 1313
Bsp1407I TGTACA 1 cut(s) 819
Bsp143I GATC 6 cut(s) 239, 360, 689, 696, 838, 1595
Bsp19I CCATGG 1 cut(s) 333
BspACI CCGC 3 cut(s) 401, 1226, 1293
BspANI GGCC 4 cut(s) 518, 849, 1143, 1204
BspCNI CTCAG 1 cut(s) 1421
BspLI GGNNCC 6 cut(s) 570, 606, 721, 797, 1230, 1363
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 3 cut(s) 247, 368, 697
BspQI GCTCTTC 1 cut(s) 1449
BspT104I TTCGAA 1 cut(s) 391
BspT107I GGYRCC 3 cut(s) 568, 719, 1228
BsrDI GCAATG 2 cut(s) 195, 651
BsrGI TGTACA 1 cut(s) 819
BsrI ACTGG 2 cut(s) 681, 1318
BssECI CCNNGG 3 cut(s) 333, 744, 1062
BssMI GATC 6 cut(s) 239, 360, 689, 696, 838, 1595
BssNI GRCGYC 1 cut(s) 267
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 3 cut(s) 333, 744, 1062
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 1 cut(s) 851
Bst4CI ACNGT 3 cut(s) 370, 904, 1546
Bst6I CTCTTC 2 cut(s) 882, 1449
BstACI GRCGYC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 819
BstBI TTCGAA 1 cut(s) 391
BstC8I GCNNGC 2 cut(s) 343, 1206
BstDEI CTNAG 3 cut(s) 703, 1095, 1408
BstDSI CCRYGG 1 cut(s) 333
BstF5I GGATG 1 cut(s) 98
BstKTI GATC 6 cut(s) 242, 363, 692, 699, 841, 1598
BstMAI GTCTC 2 cut(s) 1151, 1279
BstMBI GATC 6 cut(s) 239, 360, 689, 696, 838, 1595
BstMWI GCNNNNNNNGC 6 cut(s) 42, 164, 566, 855, 1226, 1235
BstNI CCWGG 1 cut(s) 851
BstSCI CCNGG 1 cut(s) 849
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 1313
BstV1I GCAGC 3 cut(s) 187, 469, 1466
BstV2I GAAGAC 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 312
BsuRI GGCC 4 cut(s) 518, 849, 1143, 1204
BtgI CCRYGG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 98
BtsI GCAGTG 1 cut(s) 1341
BtsIMutI CAGTG 5 cut(s) 484, 909, 1036, 1311, 1341
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 2 cut(s) 343, 1206
Cfr13I GGNCC 1 cut(s) 1362
CseI GACGC 3 cut(s) 173, 256, 340
Csp6I GTAC 5 cut(s) 820, 900, 932, 1290, 1533
CviAII CATG 5 cut(s) 124, 334, 616, 944, 1150
CviQI GTAC 5 cut(s) 820, 900, 932, 1290, 1533
DdeI CTNAG 3 cut(s) 703, 1095, 1408
DpnI GATC 6 cut(s) 241, 362, 691, 698, 840, 1597
DpnII GATC 6 cut(s) 239, 360, 689, 696, 838, 1595
DraIII CACNNNGTG 1 cut(s) 1390
EaeI YGGCCR 1 cut(s) 1141
Eam1104I CTCTTC 2 cut(s) 882, 1449
EarI CTCTTC 2 cut(s) 882, 1449
Eco130I CCWWGG 3 cut(s) 333, 744, 1062
Eco147I AGGCCT 2 cut(s) 518, 1204
Eco24I GRGCYC 1 cut(s) 1047
Eco47I GGWCC 1 cut(s) 1362
Eco88I CYCGRG 1 cut(s) 248
EcoRII CCWGG 1 cut(s) 849
EcoT14I CCWWGG 3 cut(s) 333, 744, 1062
EcoT38I GRGCYC 1 cut(s) 1047
ErhI CCWWGG 3 cut(s) 333, 744, 1062
Esp3I CGTCTC 2 cut(s) 1151, 1279
FaeI CATG 5 cut(s) 127, 337, 619, 947, 1153
FaqI GGGAC 5 cut(s) 112, 438, 1080, 1375, 1555
FatI CATG 5 cut(s) 123, 333, 615, 943, 1149
FauNDI CATATG 1 cut(s) 50
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 4 cut(s) 201, 483, 1227, 1480
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 1047
Fsp4HI GCNGC 4 cut(s) 201, 483, 1227, 1480
FspBI CTAG 7 cut(s) 38, 224, 551, 800, 1016, 1223, 1550
GluI GCNGC 4 cut(s) 201, 483, 1227, 1480
GsaI CCCAGC 1 cut(s) 1268
GsuI CTGGAG 3 cut(s) 288, 872, 1335
HaeIII GGCC 4 cut(s) 518, 849, 1143, 1204
HapII CCGG 3 cut(s) 192, 660, 723
HgaI GACGC 3 cut(s) 173, 256, 340
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 5 cut(s) 127, 337, 619, 947, 1153
HindIII AAGCTT 1 cut(s) 18
HinfI GANTC 2 cut(s) 1079, 1503
HpaII CCGG 3 cut(s) 192, 660, 723
HphI GGTGA 7 cut(s) 322, 489, 589, 670, 881, 938, 1498
Hpy166II GTNNAC 3 cut(s) 820, 913, 1311
Hpy188I TCNGA 4 cut(s) 163, 239, 773, 843
Hpy188III TCNNGA 6 cut(s) 109, 786, 1054, 1083, 1163, 1360
Hpy8I GTNNAC 3 cut(s) 820, 913, 1311
Hpy99I CGWCG 1 cut(s) 167
HpyAV CCTTC 6 cut(s) 94, 221, 1138, 1164, 1454, 1519
HpyCH4III ACNGT 3 cut(s) 370, 904, 1546
HpyCH4IV ACGT 3 cut(s) 977, 1272, 1535
HpyCH4V TGCA 8 cut(s) 455, 907, 988, 1034, 1208, 1311, 1334, 1568
HpyF10VI GCNNNNNNNGC 6 cut(s) 42, 164, 566, 855, 1226, 1235
HpyF3I CTNAG 3 cut(s) 703, 1095, 1408
HpySE526I ACGT 3 cut(s) 977, 1272, 1535
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 5 cut(s) 127, 337, 619, 947, 1153
Ksp22I TGATCA 1 cut(s) 838
Kzo9I GATC 6 cut(s) 239, 360, 689, 696, 838, 1595
LguI GCTCTTC 1 cut(s) 1449
LmnI GCTCC 4 cut(s) 604, 795, 892, 1316
Lsp1109I GCAGC 3 cut(s) 187, 469, 1466
LweI GCATC 2 cut(s) 54, 729
MaeI CTAG 7 cut(s) 38, 224, 551, 800, 1016, 1223, 1550
MaeII ACGT 3 cut(s) 977, 1272, 1535
MaeIII GTNAC 3 cut(s) 283, 973, 1496
MalI GATC 6 cut(s) 241, 362, 691, 698, 840, 1597
MboI GATC 6 cut(s) 239, 360, 689, 696, 838, 1595
MfeI CAATTG 2 cut(s) 756, 1038
MhlI GDGCHC 3 cut(s) 514, 1047, 1313
MluCI AATT 7 cut(s) 272, 631, 663, 756, 1038, 1320, 1370
MlyI GAGTC 1 cut(s) 1088
MmeI TCCRAC 3 cut(s) 186, 338, 433
MnlI CCTC 9 cut(s) 19, 169, 239, 510, 874, 883, 913, 955, 1079
MroXI GAANNNNTTC 1 cut(s) 20
MseI TTAA 4 cut(s) 32, 635, 957, 1556
MslI CAYNNNNRTG 2 cut(s) 335, 590
MspI CCGG 3 cut(s) 192, 660, 723
MspR9I CCNGG 1 cut(s) 851
MunI CAATTG 2 cut(s) 756, 1038
Mva1269I GAATGC 1 cut(s) 1208
MvaI CCWGG 1 cut(s) 851
MwoI GCNNNNNNNGC 6 cut(s) 42, 164, 566, 855, 1226, 1235
NcoI CCATGG 1 cut(s) 333
NdeI CATATG 1 cut(s) 50
NdeII GATC 6 cut(s) 239, 360, 689, 696, 838, 1595
NlaIII CATG 5 cut(s) 127, 337, 619, 947, 1153
NlaIV GGNNCC 6 cut(s) 570, 606, 721, 797, 1230, 1363
NmuCI GTSAC 2 cut(s) 283, 973
NspV TTCGAA 1 cut(s) 391
OliI CACNNNNGTG 1 cut(s) 335
PceI AGGCCT 2 cut(s) 518, 1204
PciSI GCTCTTC 1 cut(s) 1449
PctI GAATGC 1 cut(s) 1208
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 1 cut(s) 1503
PkrI GCNGC 4 cut(s) 202, 484, 1228, 1481
PleI GAGTC 1 cut(s) 1087
PpsI GAGTC 1 cut(s) 1087
Psp6I CCWGG 1 cut(s) 849
PspFI CCCAGC 1 cut(s) 1264
PspGI CCWGG 1 cut(s) 849
PspN4I GGNNCC 6 cut(s) 570, 606, 721, 797, 1230, 1363
PspPI GGNCC 1 cut(s) 1362
PsrI GAACNNNNNNTAC 2 cut(s) 803, 835
RsaI GTAC 5 cut(s) 821, 901, 933, 1291, 1534
RsaNI GTAC 5 cut(s) 820, 900, 932, 1290, 1533
RseI CAYNNNNRTG 2 cut(s) 335, 590
SapI GCTCTTC 1 cut(s) 1449
SaqAI TTAA 4 cut(s) 32, 635, 957, 1556
SatI GCNGC 4 cut(s) 201, 483, 1227, 1480
Sau3AI GATC 6 cut(s) 239, 360, 689, 696, 838, 1595
Sau96I GGNCC 1 cut(s) 1362
SchI GAGTC 1 cut(s) 1088
ScrFI CCNGG 1 cut(s) 851
SduI GDGCHC 3 cut(s) 514, 1047, 1313
SfaNI GCATC 2 cut(s) 54, 729
SfcI CTRYAG 1 cut(s) 561
SfuI TTCGAA 1 cut(s) 391
SinI GGWCC 1 cut(s) 1362
SmiMI CAYNNNNRTG 2 cut(s) 335, 590
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 550
Sse9I AATT 7 cut(s) 272, 631, 663, 756, 1038, 1320, 1370
SseBI AGGCCT 2 cut(s) 518, 1204
SsiI CCGC 3 cut(s) 401, 1226, 1293
SspI AATATT 1 cut(s) 321
SspMI CTAG 7 cut(s) 38, 224, 551, 800, 1016, 1223, 1550
StuI AGGCCT 2 cut(s) 518, 1204
StyD4I CCNGG 1 cut(s) 849
StyI CCWWGG 3 cut(s) 333, 744, 1062
TaaI ACNGT 3 cut(s) 370, 904, 1546
TaiI ACGT 3 cut(s) 980, 1275, 1538
TaqI TCGA 2 cut(s) 14, 391
TasI AATT 7 cut(s) 272, 631, 663, 756, 1038, 1320, 1370
TatI WGTACW 3 cut(s) 819, 899, 931
TauI GCSGC 1 cut(s) 1229
TfiI GAWTC 1 cut(s) 1503
Tru1I TTAA 4 cut(s) 32, 635, 957, 1556
Tru9I TTAA 4 cut(s) 32, 635, 957, 1556
TscAI CASTG 5 cut(s) 484, 909, 1036, 1318, 1341
TseFI GTSAC 2 cut(s) 283, 973
TseI GCWGC 3 cut(s) 200, 482, 1479
Tsp45I GTSAC 2 cut(s) 283, 973
TspDTI ATGAA 3 cut(s) 929, 1482, 1501
TspRI CASTG 5 cut(s) 484, 909, 1036, 1318, 1341
VneI GTGCAC 1 cut(s) 1309
VpaK11BI GGWCC 1 cut(s) 1362
XapI RAATTY 2 cut(s) 663, 1370
XmnI GAANNNNTTC 1 cut(s) 20
XspI CTAG 7 cut(s) 38, 224, 551, 800, 1016, 1223, 1550
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.