Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0001224

Physical Location & Seq

Genomic Coordinates Reverse (-)

28565671 .. 28566879

Gene Structure 1209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG173000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTCTTCCTCCTCATCAAAAGCTTTCCAATGGCTAAGCCTTGTGGGCATCATATGGCTTCAATCCATAAACGGAACAAACACCACCTTCCCTGCTTACTCATCCCAACTCAAGAGCACTCTCTCCATCTCCCAACTACAAATCAACAATCTCGTCTTCGCCTCCAACGCAGGGAAACTCTTTGGTTGGTTTTCCGGCATTGCTGCTATTTACCTTCCTCTCTGGCTAGTCCTCATGATCGGCTCACTTCTCGGGTTGATTGGCTACGGTGTCCAATTTCTATTCGTAACCAACCGAATCTCATCATCTCCAGCATATTGGCAAATATTCTTGCTCACCATGGTGGCCGGAAATAGTGTCTGTTGGATCAACACCGTTTGCTATGTTGTTTGCATTCGAAACTTTCCGTTTCACCAACAGGTTGCTGTGGGACTAACAACAAGTTACCAGGGATTGAGTGCAAAAATCTACACAGATATCGTTGGCGCTGCTTTTTCTTCTTCACCTCATAAGAGAGCCAAGGCCTATCTTCTTCTAAACTCTCTCCTGCCTTTACTAGTCTGTGTTGTAGTGGCATCATTTGTGAGAGACATTGATGTGGGAAGAGGGGAGCCCAGCAATATGGCAGCGGGGTTCAAATTATTGTTTGTGGTAACAATTGCCACAGGAATCTATGCTGTGATCACCAGTTTAGGATCAATGTCGTCTATCCACTTATCGCCATTGCACAGTGTGATAGGTACCGCATTGTTCCTACTGATGCCCTTGGTCGTCCCAATTGGGGAAAAAATGGGAGAAAAATTATCAAGATGGAGGAGCCTAGAAAGAGAGAACATAGTGCCCAGTTTCAGCACAGATGATCAGAAAGGCCTTGAGAACATAGAGAGTGGTGTAGTGAAAGAGGGAGAAGAAGAGGAACATAGTACAGTGCATGTTCATAATGAGGTTGGTGAAATACAAATTCGTCATGGGATTTGTGTTAGAGAGGAGATTGGAGTGAGGTTGATGGTGAAAAGGATAGATTTCTGGTTATATTTCCTAGTATATATTTTCAGTGCAACAATTGGGCTTGTGTTCTTGAACACCTTCGGACAGATAGTAGAATCAAGAGGCTCATGTAGGACTTCTTCTCTGGTTTCTTTATCTTCTTCATTCGGGTTCTTTGGCCGTCTTATGACTTCACTTCTGGACTATTTCTTCTCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

402

Amino Acids

44.3

Weight (kDa)

8.68

Isoelectric Point (pI)

42.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Nodulin-like	PF06813	10 - 260	1.2e-73	Nodulin-like
NFD4_C	PF23262	327 - 400	1.8e-30	NFD4, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30300
fragaria_vesca	FvH4_2g11110 FvH4_3g40010
malus_domestica	MD03G1058400.v1.1 MD11G1060600.v1.1
pyrus_communis	pycom03g04680 pycom11g05010
rosa_chinensis	RchiOBHm_Chr5g0062631 RchiOBHm_Chr5g0062641 RchiOBHm_Chr5g0072091 RchiOBHm_Chr5g0072101 RchiOBHm_Chr5g0072121 RchiOBHm_Chr5g0072131 RchiOBHm_Chr6g0269351 RchiOBHm_Chr6g0269361
rosa_laevigata	RLG00000013855 RLG00000013856 RLG00000036273 RLG00000036279
rosa_multiflora	Rmu_sc0001152.1_g000010 Rmu_sc0001152.1_g000038 Rmu_sc0003673.1_g000004 Rmu_sc0003673.1_g000010 Rmu_sc0003891.1_g000004 Rmu_sc0010048.1_g000001 Rmu_ssc0000291.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009070 Rroxscaffold_1G00009110 Rroxscaffold_7G00198780 Rroxscaffold_7G00198800
rosa_rugosa	Rorug05G0416400 Rorug05G0416500 Rorug06G0047300
rosa_samantha	Rh5AG411500 Rh5AG472500 Rh5AG472700 Rh5BG425200 Rh5BG492100 Rh5BG492200 Rh5CG449100 Rh5CG515900 Rh5CG516000 Rh5DG439300 Rh5DG504400 Rh5DG504600 Rh6AG167700 Rh6BG172800 Rh6BG173000 Rh6CG166900 Rh6CG167100 Rh6DG158700 Rh6DG158900
rosa_wichuraiana	Rw5G038680 Rw5G038690 Rw5G043890 Rw5G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	740
AccB1I	GGYRCC	1 cut(s)	740
AciI	CCGC	2 cut(s)	629, 744
AclWI	GGATC	2 cut(s)	374, 703
AcoI	YGGCCR	2 cut(s)	345, 1165
AcsI	RAATTY	1 cut(s)	960
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	2 cut(s)	742, 925
AfiI	CCNNNNNNNGG	2 cut(s)	171, 781
AgsI	TTSAA	3 cut(s)	62, 637, 1081
AhlI	ACTAGT	1 cut(s)	556
AjnI	CCWGG	1 cut(s)	447
AleI	CACNNNNGTG	1 cut(s)	341
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	582
AlwI	GGATC	2 cut(s)	374, 703
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	4 cut(s)	345, 522, 868, 1165
ApeKI	GCWGC	3 cut(s)	203, 488, 626
ApoI	RAATTY	1 cut(s)	960
Asp700I	GAANNNNTTC	1 cut(s)	1085
Asp718I	GGTACC	1 cut(s)	740
AspLEI	GCGC	1 cut(s)	488
AsuHPI	GGTGA	6 cut(s)	328, 404, 495, 676, 962, 1021
AsuII	TTCGAA	1 cut(s)	397
AvaI	CYCGRG	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	843
BanI	GGYRCC	1 cut(s)	740
BanII	GRGCYC	1 cut(s)	615
BarI	GAAGNNNNNNTAC	2 cut(s)	1111, 1143
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	3 cut(s)	190, 475, 638
BccI	CCATC	3 cut(s)	134, 804, 1000
BceAI	ACGGC	1 cut(s)	1152
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	2 cut(s)	681, 859
BcoDI	GTCTC	1 cut(s)	582
BcuI	ACTAGT	1 cut(s)	556
BfaI	CTAG	4 cut(s)	227, 557, 821, 1040
BfoI	RGCGCY	1 cut(s)	489
BglI	GCCNNNNNGGC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	204, 489, 627
BlpI	GCTNAGC	1 cut(s)	35
BlsI	GCNGC	3 cut(s)	205, 490, 628
Bme1390I	CCNGG	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	251
BmiI	GGNNCC	3 cut(s)	612, 742, 818
BmrFI	CCNGG	1 cut(s)	449
BmrI	ACTGGG	1 cut(s)	837
BmsI	GCATC	3 cut(s)	57, 584, 750
BmuI	ACTGGG	1 cut(s)	837
BpiI	GAAGAC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	294
Bpu1102I	GCTNAGC	1 cut(s)	35
Bpu14I	TTCGAA	1 cut(s)	397
BpuEI	CTTGAG	3 cut(s)	95, 893, 1186
BsaJI	CCNNGG	4 cut(s)	339, 448, 519, 765
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 781
Bse1I	ACTGG	2 cut(s)	687, 843
Bse3DI	GCAATG	2 cut(s)	198, 722
BseBI	CCWGG	1 cut(s)	449
BseDI	CCNNGG	4 cut(s)	339, 448, 519, 765
BseGI	GGATG	1 cut(s)	101
BseLI	CCNNNNNNNGG	2 cut(s)	171, 781
BseMI	GCAATG	2 cut(s)	198, 722
BseNI	ACTGG	2 cut(s)	687, 843
BseRI	GAGGAG	2 cut(s)	829, 1001
BseSI	GKGCMC	1 cut(s)	843
BseXI	GCAGC	3 cut(s)	190, 475, 638
BseYI	CCCAGC	1 cut(s)	614
BshFI	GGCC	4 cut(s)	347, 524, 870, 1167
BshNI	GGYRCC	1 cut(s)	740
BsiHKAI	GWGCWC	1 cut(s)	119
BsiHKCI	CYCGRG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	195, 348
BslFI	GGGAC	2 cut(s)	444, 758
BslI	CCNNNNNNNGG	2 cut(s)	171, 781
BsmAI	GTCTC	1 cut(s)	582
BsmFI	GGGAC	2 cut(s)	444, 758
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	347, 524, 870, 1167
BsoBI	CYCGRG	1 cut(s)	251
Bsp119I	TTCGAA	1 cut(s)	397
Bsp1286I	GDGCHC	3 cut(s)	119, 615, 843
Bsp143I	GATC	5 cut(s)	237, 366, 681, 695, 859
Bsp1720I	GCTNAGC	1 cut(s)	35
Bsp19I	CCATGG	1 cut(s)	339
BspACI	CCGC	2 cut(s)	629, 744
BspANI	GGCC	4 cut(s)	347, 524, 870, 1167
BspHI	TCATGA	1 cut(s)	234
BspLI	GGNNCC	3 cut(s)	612, 742, 818
BspPI	GGATC	2 cut(s)	374, 703
BspT104I	TTCGAA	1 cut(s)	397
BspT107I	GGYRCC	1 cut(s)	740
BsrDI	GCAATG	2 cut(s)	198, 722
BsrI	ACTGG	2 cut(s)	687, 843
BssECI	CCNNGG	4 cut(s)	339, 448, 519, 765
BssMI	GATC	5 cut(s)	237, 366, 681, 695, 859
BssT1I	CCWWGG	3 cut(s)	339, 519, 765
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	4 cut(s)	269, 376, 731, 928
Bst6I	CTCTTC	2 cut(s)	598, 906
BstBI	TTCGAA	1 cut(s)	397
BstDEI	CTNAG	1 cut(s)	35
BstDSI	CCRYGG	1 cut(s)	339
BstF5I	GGATG	1 cut(s)	101
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	5 cut(s)	240, 369, 684, 698, 862
BstMAI	GTCTC	1 cut(s)	582
BstMBI	GATC	5 cut(s)	237, 366, 681, 695, 859
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 167
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	935
BstSCI	CCNGG	1 cut(s)	447
BstSLI	GKGCMC	1 cut(s)	843
BstV1I	GCAGC	3 cut(s)	190, 475, 638
BstV2I	GAAGAC	1 cut(s)	148
BstXI	CCANNNNNNTGG	2 cut(s)	318, 622
BsuRI	GGCC	4 cut(s)	347, 524, 870, 1167
BtgI	CCRYGG	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	101
BtsIMutI	CAGTG	3 cut(s)	736, 933, 1060
CciI	TCATGA	1 cut(s)	234
CfoI	GCGC	1 cut(s)	488
Csp6I	GTAC	2 cut(s)	741, 924
CviAII	CATG	5 cut(s)	235, 340, 932, 968, 1116
CviQI	GTAC	2 cut(s)	741, 924
DdeI	CTNAG	1 cut(s)	35
DpnI	GATC	5 cut(s)	239, 368, 683, 697, 861
DpnII	GATC	5 cut(s)	237, 366, 681, 695, 859
DraIII	CACNNNGTG	1 cut(s)	733
EaeI	YGGCCR	2 cut(s)	345, 1165
Eam1104I	CTCTTC	2 cut(s)	598, 906
EarI	CTCTTC	2 cut(s)	598, 906
Eco130I	CCWWGG	3 cut(s)	339, 519, 765
Eco147I	AGGCCT	2 cut(s)	524, 870
Eco24I	GRGCYC	1 cut(s)	615
Eco32I	GATATC	1 cut(s)	478
Eco88I	CYCGRG	1 cut(s)	251
EcoRII	CCWGG	1 cut(s)	447
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	3 cut(s)	339, 519, 765
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	3 cut(s)	339, 519, 765
FaeI	CATG	5 cut(s)	238, 343, 935, 971, 1119
FaqI	GGGAC	2 cut(s)	444, 758
FatI	CATG	5 cut(s)	234, 339, 931, 967, 1115
FauI	CCCGC	1 cut(s)	622
FauNDI	CATATG	1 cut(s)	53
FbaI	TGATCA	2 cut(s)	681, 859
Fnu4HI	GCNGC	3 cut(s)	204, 489, 627
FokI	GGATG	1 cut(s)	88
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	3 cut(s)	204, 489, 627
FspBI	CTAG	4 cut(s)	227, 557, 821, 1040
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	3 cut(s)	204, 489, 627
GsaI	CCCAGC	1 cut(s)	618
GsuI	CTGGAG	1 cut(s)	294
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	4 cut(s)	347, 524, 870, 1167
HapII	CCGG	2 cut(s)	195, 348
HhaI	GCGC	1 cut(s)	488
Hin1II	CATG	5 cut(s)	238, 343, 935, 971, 1119
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	297, 669, 1103
HpaII	CCGG	2 cut(s)	195, 348
HphI	GGTGA	6 cut(s)	328, 404, 495, 676, 962, 1021
Hpy188I	TCNGA	2 cut(s)	864, 1091
Hpy188III	TCNNGA	6 cut(s)	112, 235, 807, 1078, 1107, 1187
HpyAV	CCTTC	3 cut(s)	97, 224, 1096
HpyCH4III	ACNGT	4 cut(s)	269, 376, 731, 928
HpyCH4V	TGCA	5 cut(s)	393, 461, 727, 931, 1058
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 167
HpyF3I	CTNAG	1 cut(s)	35
Hsp92II	CATG	5 cut(s)	238, 343, 935, 971, 1119
HspAI	GCGC	1 cut(s)	486
KpnI	GGTACC	1 cut(s)	744
Ksp22I	TGATCA	2 cut(s)	681, 859
Kzo9I	GATC	5 cut(s)	237, 366, 681, 695, 859
LmnI	GCTCC	2 cut(s)	610, 816
Lsp1109I	GCAGC	3 cut(s)	190, 475, 638
LweI	GCATC	3 cut(s)	57, 584, 750
MaeI	CTAG	4 cut(s)	227, 557, 821, 1040
MaeIII	GTNAC	3 cut(s)	286, 443, 652
MalI	GATC	5 cut(s)	239, 368, 683, 697, 861
MboI	GATC	5 cut(s)	237, 366, 681, 695, 859
MfeI	CAATTG	3 cut(s)	657, 777, 1062
MhlI	GDGCHC	3 cut(s)	119, 615, 843
MluCI	AATT	7 cut(s)	275, 638, 657, 777, 800, 960, 1062
MmeI	TCCRAC	2 cut(s)	189, 344
MroXI	GAANNNNTTC	1 cut(s)	1085
MslI	CAYNNNNRTG	2 cut(s)	341, 596
MspA1I	CMGCKG	1 cut(s)	629
MspI	CCGG	2 cut(s)	195, 348
MspR9I	CCNGG	1 cut(s)	449
MunI	CAATTG	3 cut(s)	657, 777, 1062
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	2 cut(s)	45, 167
NcoI	CCATGG	1 cut(s)	339
NdeI	CATATG	1 cut(s)	53
NdeII	GATC	5 cut(s)	237, 366, 681, 695, 859
NlaIII	CATG	5 cut(s)	238, 343, 935, 971, 1119
NlaIV	GGNNCC	3 cut(s)	612, 742, 818
NspI	RCATGY	1 cut(s)	935
NspV	TTCGAA	1 cut(s)	397
OliI	CACNNNNGTG	1 cut(s)	341
PagI	TCATGA	1 cut(s)	234
PceI	AGGCCT	2 cut(s)	524, 870
PctI	GAATGC	1 cut(s)	393
PdmI	GAANNNNTTC	1 cut(s)	1085
PfeI	GAWTC	3 cut(s)	297, 669, 1103
PkrI	GCNGC	3 cut(s)	205, 490, 628
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	614
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	3 cut(s)	612, 742, 818
RsaI	GTAC	2 cut(s)	742, 925
RsaNI	GTAC	2 cut(s)	741, 924
RseI	CAYNNNNRTG	2 cut(s)	341, 596
SatI	GCNGC	3 cut(s)	204, 489, 627
Sau3AI	GATC	5 cut(s)	237, 366, 681, 695, 859
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	3 cut(s)	119, 615, 843
SfaNI	GCATC	3 cut(s)	57, 584, 750
SfuI	TTCGAA	1 cut(s)	397
SmiMI	CAYNNNNRTG	2 cut(s)	341, 596
SmlI	CTYRAG	3 cut(s)	110, 872, 1201
SmoI	CTYRAG	3 cut(s)	110, 872, 1201
SpeI	ACTAGT	1 cut(s)	556
Sse9I	AATT	7 cut(s)	275, 638, 657, 777, 800, 960, 1062
SseBI	AGGCCT	2 cut(s)	524, 870
SsiI	CCGC	2 cut(s)	629, 744
SspI	AATATT	1 cut(s)	327
SspMI	CTAG	4 cut(s)	227, 557, 821, 1040
StuI	AGGCCT	2 cut(s)	524, 870
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	3 cut(s)	339, 519, 765
TaaI	ACNGT	4 cut(s)	269, 376, 731, 928
TaqI	TCGA	1 cut(s)	397
TasI	AATT	7 cut(s)	275, 638, 657, 777, 800, 960, 1062
TatI	WGTACW	1 cut(s)	923
TfiI	GAWTC	3 cut(s)	297, 669, 1103
TscAI	CASTG	3 cut(s)	736, 933, 1060
TseI	GCWGC	3 cut(s)	203, 488, 626
TspDTI	ATGAA	2 cut(s)	926, 1140
TspGWI	ACGGA	2 cut(s)	87, 396
TspRI	CASTG	3 cut(s)	736, 933, 1060
XapI	RAATTY	1 cut(s)	960
XceI	RCATGY	1 cut(s)	935
XmnI	GAANNNNTTC	1 cut(s)	1085
XspI	CTAG	4 cut(s)	227, 557, 821, 1040

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.