Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001224

Physical Location & Seq

Genomic Coordinates Reverse (-)

57702127 .. 57702670

Gene Structure 544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0416400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTGGAGTCGGTACGGTTGTACCGTACCAAGACTTCGGTTACCGAGTTTTCGGCTACCAATTCACTTGGCTCGGCTCGGATGCGGTTGGTACGGTTTGGTTCGGGAGAACTTGCCAGCCCTAGCTACTGCTGCCATGCATGACTCTGTTTCAGACAACAATGATGGCGCCAGGTTTACGTGGTCCAACAAGTTTACGAAGGAAAGATTGGATAGAGGCTTCCAATCAACACAGTGGAGAGACCGATACCCTTTAAGTCGAGTGATCACACTACCTCCCTCAGACTCTGACCATAATACAATTCTTGTGGAAGTCAAAACATATTGTCATCCATCTAGACACAGCCCTCGAAAATTTCGTTTTGAAGAAGGGTGGTTTGGCGAGGATCCATGTCATGAGATTATTCAAAGAAACTGGGCAAGACCTCTAACTGGAAACGCTTTGCAACAACTTGGCACAAAGATTCACATTGCCGGCCAACAACTCATGCAGTGGCACCAATTAGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

170

Amino Acids

19.81

Weight (kDa)

9.46

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30300
fragaria_vesca	FvH4_2g11110 FvH4_3g40010
malus_domestica	MD03G1058400.v1.1 MD11G1060600.v1.1
pyrus_communis	pycom03g04680 pycom11g05010
rosa_chinensis	RchiOBHm_Chr5g0062631 RchiOBHm_Chr5g0062641 RchiOBHm_Chr5g0072091 RchiOBHm_Chr5g0072101 RchiOBHm_Chr5g0072121 RchiOBHm_Chr5g0072131 RchiOBHm_Chr6g0269351 RchiOBHm_Chr6g0269361
rosa_laevigata	RLG00000013855 RLG00000013856 RLG00000036273 RLG00000036279
rosa_multiflora	Rmu_sc0001152.1_g000010 Rmu_sc0001152.1_g000038 Rmu_sc0003673.1_g000004 Rmu_sc0003673.1_g000010 Rmu_sc0003891.1_g000004 Rmu_sc0010048.1_g000001 Rmu_ssc0000291.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009070 Rroxscaffold_1G00009110 Rroxscaffold_7G00198780 Rroxscaffold_7G00198800
rosa_rugosa	Rorug05G0416400 Rorug05G0416500 Rorug06G0047300
rosa_samantha	Rh5AG411500 Rh5AG472500 Rh5AG472700 Rh5BG425200 Rh5BG492100 Rh5BG492200 Rh5CG449100 Rh5CG515900 Rh5CG516000 Rh5DG439300 Rh5DG504400 Rh5DG504600 Rh6AG167700 Rh6BG172800 Rh6BG173000 Rh6CG166900 Rh6CG167100 Rh6DG158700 Rh6DG158900
rosa_wichuraiana	Rw5G038680 Rw5G038690 Rw5G043890 Rw5G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	167, 495
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	2 cut(s)	380, 393
AcoI	YGGCCR	1 cut(s)	475
AcsI	RAATTY	1 cut(s)	353
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	4 cut(s)	14, 22, 27, 92
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	365, 407
AjnI	CCWGG	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	4 cut(s)	191, 223, 360, 392
AluBI	AGCT	1 cut(s)	125
AluI	AGCT	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	234
AlwI	GGATC	2 cut(s)	380, 393
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	353
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	183
AvaII	GGWCC	1 cut(s)	183
BaeI	ACNNNNGTAYC	2 cut(s)	37, 37
BamHI	GGATCC	1 cut(s)	385
BanI	GGYRCC	2 cut(s)	167, 495
BarI	GAAGNNNNNNTAC	2 cut(s)	18, 50
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	158, 340
BciT130I	CCWGG	1 cut(s)	172
BclI	TGATCA	1 cut(s)	264
BcoDI	GTCTC	1 cut(s)	234
BfaI	CTAG	2 cut(s)	122, 336
BfoI	RGCGCY	1 cut(s)	171
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	172
Bme18I	GGWCC	1 cut(s)	183
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	169, 387, 497
BmrFI	CCNGG	1 cut(s)	172
BmrI	ACTGGG	1 cut(s)	424
BmsI	GCATC	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	424
BsaAI	YACGTR	1 cut(s)	180
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	234
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse118I	RCCGGY	1 cut(s)	473
Bse1I	ACTGG	2 cut(s)	419, 436
Bse3DI	GCAATG	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	86, 328
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	468
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	419, 436
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	477
BshNI	GGYRCC	2 cut(s)	167, 495
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	477
Bso31I	GGTCTC	1 cut(s)	234
Bsp143I	GATC	2 cut(s)	264, 385
BspACI	CCGC	1 cut(s)	84
BspANI	GGCC	1 cut(s)	477
BspCNI	CTCAG	1 cut(s)	293
BspHI	TCATGA	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	169, 387, 497
BspPI	GGATC	2 cut(s)	380, 393
BspT107I	GGYRCC	2 cut(s)	167, 495
BspTNI	GGTCTC	1 cut(s)	234
BsrDI	GCAATG	1 cut(s)	468
BsrFI	RCCGGY	1 cut(s)	473
BsrI	ACTGG	2 cut(s)	419, 436
BssAI	RCCGGY	1 cut(s)	473
BssMI	GATC	2 cut(s)	264, 385
BssNI	GRCGYC	1 cut(s)	168
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	4 cut(s)	17, 25, 95, 234
BstACI	GRCGYC	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	180
BstC8I	GCNNGC	2 cut(s)	117, 475
BstDEI	CTNAG	1 cut(s)	280
BstEII	GGTNACC	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	86, 328
BstH2I	RGCGCY	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	2 cut(s)	267, 388
BstMAI	GTCTC	1 cut(s)	234
BstMBI	GATC	2 cut(s)	264, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	172
BstPI	GGTNACC	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	170
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	477
BtsCI	GGATG	2 cut(s)	86, 328
BtsI	GCAGTG	1 cut(s)	497
BtsIMutI	CAGTG	2 cut(s)	239, 497
Cac8I	GCNNGC	2 cut(s)	117, 475
CaiI	CAGNNNCTG	1 cut(s)	287
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	1 cut(s)	170
Cfr10I	RCCGGY	1 cut(s)	473
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	4 cut(s)	13, 21, 26, 91
CspCI	CAANNNNNGTGG	2 cut(s)	288, 323
CviAII	CATG	5 cut(s)	136, 140, 390, 395, 487
CviJI	RGCY	8 cut(s)	55, 71, 76, 119, 125, 219, 345, 477
CviKI_1	RGCY	8 cut(s)	55, 71, 76, 119, 125, 219, 345, 477
CviQI	GTAC	4 cut(s)	13, 21, 26, 91
DdeI	CTNAG	1 cut(s)	280
DinI	GGCGCC	1 cut(s)	169
DpnI	GATC	2 cut(s)	266, 387
DpnII	GATC	2 cut(s)	264, 385
EaeI	YGGCCR	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	234
Eco47I	GGWCC	1 cut(s)	183
Eco91I	GGTNACC	1 cut(s)	39
EcoO65I	GGTNACC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	170
EcoT22I	ATGCAT	1 cut(s)	141
EgeI	GGCGCC	1 cut(s)	169
EheI	GGCGCC	1 cut(s)	169
FaeI	CATG	5 cut(s)	139, 143, 393, 398, 490
FaiI	YATR	7 cut(s)	137, 141, 294, 322, 391, 396, 488
FatI	CATG	5 cut(s)	135, 139, 389, 394, 486
FbaI	TGATCA	1 cut(s)	264
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	2 cut(s)	93, 315
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	2 cut(s)	122, 336
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	1 cut(s)	132
HaeII	RGCGCY	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	477
HapII	CCGG	1 cut(s)	474
HhaI	GCGC	1 cut(s)	170
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	139, 143, 393, 398, 490
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HinfI	GANTC	4 cut(s)	7, 143, 284, 463
HpaII	CCGG	1 cut(s)	474
Hpy166II	GTNNAC	2 cut(s)	177, 195
Hpy188I	TCNGA	4 cut(s)	80, 154, 283, 289
Hpy188III	TCNNGA	3 cut(s)	104, 336, 395
Hpy8I	GTNNAC	2 cut(s)	177, 195
HpyAV	CCTTC	2 cut(s)	193, 362
HpyCH4III	ACNGT	4 cut(s)	17, 25, 95, 234
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	3 cut(s)	139, 445, 490
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	280
HpySE526I	ACGT	1 cut(s)	179
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	139, 143, 393, 398, 490
HspAI	GCGC	1 cut(s)	168
KasI	GGCGCC	1 cut(s)	167
KroI	GCCGGC	1 cut(s)	473
KroNI	GCCGGC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	264
Kzo9I	GATC	2 cut(s)	264, 385
LpnPI	CCDG	6 cut(s)	129, 157, 184, 400, 417, 487
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	71
MaeI	CTAG	2 cut(s)	122, 336
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	1 cut(s)	39
MalI	GATC	2 cut(s)	266, 387
MboI	GATC	2 cut(s)	264, 385
MboII	GAAGA	1 cut(s)	377
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	4 cut(s)	60, 300, 353, 500
Mly113I	GGCGCC	1 cut(s)	168
MlyI	GAGTC	3 cut(s)	16, 137, 278
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	6 cut(s)	209, 285, 289, 357, 376, 435
Mph1103I	ATGCAT	1 cut(s)	141
MroNI	GCCGGC	1 cut(s)	473
MseI	TTAA	1 cut(s)	254
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	131
NaeI	GCCGGC	1 cut(s)	475
NarI	GGCGCC	1 cut(s)	168
NdeII	GATC	2 cut(s)	264, 385
NgoMIV	GCCGGC	1 cut(s)	473
NlaIII	CATG	5 cut(s)	139, 143, 393, 398, 490
NlaIV	GGNNCC	3 cut(s)	169, 387, 497
NmeAIII	GCCGAG	1 cut(s)	52
NsiI	ATGCAT	1 cut(s)	141
PagI	TCATGA	1 cut(s)	394
PcsI	WCGNNNNNNNCGW	2 cut(s)	21, 355
PdiI	GCCGGC	1 cut(s)	475
PfeI	GAWTC	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	3 cut(s)	15, 137, 278
PluTI	GGCGCC	1 cut(s)	171
PpsI	GAGTC	3 cut(s)	15, 137, 278
Ppu21I	YACGTR	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	170
PspEI	GGTNACC	1 cut(s)	39
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	3 cut(s)	169, 387, 497
PspPI	GGNCC	1 cut(s)	183
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	4 cut(s)	14, 22, 27, 92
RsaNI	GTAC	4 cut(s)	13, 21, 26, 91
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	264, 385
Sau96I	GGNCC	1 cut(s)	183
SchI	GAGTC	3 cut(s)	16, 137, 278
ScrFI	CCNGG	1 cut(s)	172
SetI	ASST	5 cut(s)	127, 176, 182, 277, 427
SfaNI	GCATC	1 cut(s)	71
SfoI	GGCGCC	1 cut(s)	169
SinI	GGWCC	1 cut(s)	183
Sse9I	AATT	4 cut(s)	60, 300, 353, 500
SsiI	CCGC	1 cut(s)	84
SspDI	GGCGCC	1 cut(s)	167
SspMI	CTAG	2 cut(s)	122, 336
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	4 cut(s)	17, 25, 95, 234
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	259, 349
TaqII	GACCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	60, 300, 353, 500
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	2 cut(s)	239, 497
TseI	GCWGC	1 cut(s)	131
TspRI	CASTG	2 cut(s)	239, 497
VpaK11BI	GGWCC	1 cut(s)	183
XapI	RAATTY	1 cut(s)	353
XbaI	TCTAGA	1 cut(s)	335
XspI	CTAG	2 cut(s)	122, 336
Zsp2I	ATGCAT	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.