Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001152.1

Orthogroup ID

OG0001224

Physical Location & Seq

Genomic Coordinates Forward (+)

56137 .. 57324

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001152.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

atgtcttcctcatcaaaagctttccaatggttaagcctagtgggcatcatatggcttcaatccataaatggaacaaacacaaccttccctgcttactcatcccaactcaagaacactctctccatgtcccaaatacaaatcaacaatcttgtcttcgcctccgacgcagggaaactctttggttggttttccggcattgctgctatttaccttcccctttggctagtccttataatcggatcactcctcgggttgattggctacggcgtccaatttctattcgtaacaaaccaaatctcatctccagcatattggcaaatattcttgctcaccatggtggcaggcaatagcgtctgttggattaacaccgtttgctatgttgttagtattcgaaactttccgcttcaccaacaggttgctgtgggactaacaacaagttaccaaggattgagtgcaaaaatctacacagatattgtcagtgctgctttttcttcttcacctcataagagagcacaggcctatcttcttctaaactctctcctgcccttactagtctgtgctgtagtggcaccactggtgagaaacattgatgtgggaacaggggagccaagaaacatggcaacggggttcaatttaatattcgtgataaccattgccaccggaatctatgccgtcatcaccagtttaggatcaatgatcggcttagatagagtgataggcaccggagtattcctactgatgcccttggtaatcccaattgtggaaaaaatcagagaaaaaatatcaagaagatggagcctagacagagagaacagagtgtacaatgtcagcatagatgatcagaatggccttgagagcatagagagtggtgtagtgaaagaggaagaagaagaggaacatagtacagtgcaggttcataatgaggttggtgaagtacaggttcatcatgggattggtgttagagaggagattggagtgacgttgatggtgcaaaggatagatttctggttatatttcctagtttattttttcagtgcaacaattgggctcgtgttcttgaacaccttgggacagatagcagagtcaagaggctcatctaagacttcttctctggtttctttatcttcttccttcgggttctttggccgtctcatgccttcacttctggactatttcttctcaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Nodulin-like

Protein Analysis

395

Amino Acids

43.58

Weight (kDa)

6.31

Isoelectric Point (pI)

37.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30300
fragaria_vesca	FvH4_2g11110 FvH4_3g40010
malus_domestica	MD03G1058400.v1.1 MD11G1060600.v1.1
pyrus_communis	pycom03g04680 pycom11g05010
rosa_chinensis	RchiOBHm_Chr5g0062631 RchiOBHm_Chr5g0062641 RchiOBHm_Chr5g0072091 RchiOBHm_Chr5g0072101 RchiOBHm_Chr5g0072121 RchiOBHm_Chr5g0072131 RchiOBHm_Chr6g0269351 RchiOBHm_Chr6g0269361
rosa_laevigata	RLG00000013855 RLG00000013856 RLG00000036273 RLG00000036279
rosa_multiflora	Rmu_sc0001152.1_g000010 Rmu_sc0001152.1_g000038 Rmu_sc0003673.1_g000004 Rmu_sc0003673.1_g000010 Rmu_sc0003891.1_g000004 Rmu_sc0010048.1_g000001 Rmu_ssc0000291.1_g000009
rosa_roxburghii	Rroxscaffold_1G00009070 Rroxscaffold_1G00009110 Rroxscaffold_7G00198780 Rroxscaffold_7G00198800
rosa_rugosa	Rorug05G0416400 Rorug05G0416500 Rorug06G0047300
rosa_samantha	Rh5AG411500 Rh5AG472500 Rh5AG472700 Rh5BG425200 Rh5BG492100 Rh5BG492200 Rh5CG449100 Rh5CG515900 Rh5CG516000 Rh5DG439300 Rh5DG504400 Rh5DG504600 Rh6AG167700 Rh6BG172800 Rh6BG173000 Rh6CG166900 Rh6CG167100 Rh6DG158700 Rh6DG158900
rosa_wichuraiana	Rw5G038680 Rw5G038690 Rw5G043890 Rw5G043900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
Acc36I	ACCTGC	1 cut(s)	901
AccB1I	GGYRCC	2 cut(s)	568, 719
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	2 cut(s)	247, 697
AcoI	YGGCCR	1 cut(s)	1144
AcyI	GRCGYC	1 cut(s)	267
AfaI	GTAC	3 cut(s)	821, 904, 936
AfiI	CCNNNNNNNGG	2 cut(s)	168, 760
AgsI	TTSAA	3 cut(s)	59, 631, 1060
AhlI	ACTAGT	1 cut(s)	550
AleI	CACNNNNGTG	1 cut(s)	335
AloI	GAACNNNNNNTCC	2 cut(s)	104, 136
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	1154
AlwI	GGATC	2 cut(s)	247, 697
Ama87I	CYCGRG	1 cut(s)	248
AoxI	GGCC	3 cut(s)	516, 847, 1144
ApeKI	GCWGC	2 cut(s)	200, 482
AsuHPI	GGTGA	6 cut(s)	322, 398, 489, 589, 670, 941
AsuII	TTCGAA	1 cut(s)	391
AvaI	CYCGRG	1 cut(s)	248
BanI	GGYRCC	2 cut(s)	568, 719
BanII	GRGCYC	1 cut(s)	1050
BauI	CACGAG	1 cut(s)	1049
BbsI	GAAGAC	1 cut(s)	145
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	2 cut(s)	187, 469
BccI	CCATC	2 cut(s)	786, 979
BceAI	ACGGC	3 cut(s)	280, 656, 1131
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	1 cut(s)	1154
BcuI	ACTAGT	1 cut(s)	550
BfaI	CTAG	5 cut(s)	38, 224, 551, 800, 1019
BfmI	CTRYAG	1 cut(s)	561
BfuAI	ACCTGC	1 cut(s)	901
BglI	GCCNNNNNGGC	1 cut(s)	42
BisI	GCNGC	2 cut(s)	201, 483
BlsI	GCNGC	2 cut(s)	202, 484
BmeT110I	CYCGRG	1 cut(s)	248
BmiI	GGNNCC	4 cut(s)	570, 606, 721, 797
BmsI	GCATC	2 cut(s)	54, 729
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	1 cut(s)	288
Bpu14I	TTCGAA	1 cut(s)	391
BpuEI	CTTGAG	3 cut(s)	92, 872, 1165
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	5 cut(s)	247, 333, 442, 744, 1065
BsaWI	WCCGGW	2 cut(s)	659, 722
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 760
Bse1I	ACTGG	2 cut(s)	579, 681
Bse3DI	GCAATG	2 cut(s)	195, 651
BseDI	CCNNGG	5 cut(s)	247, 333, 442, 744, 1065
BseGI	GGATG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	168, 760
BseMI	GCAATG	2 cut(s)	195, 651
BseNI	ACTGG	2 cut(s)	579, 681
BseRI	GAGGAG	2 cut(s)	236, 980
BseXI	GCAGC	2 cut(s)	187, 469
BsgI	GTGCAG	1 cut(s)	929
BshFI	GGCC	3 cut(s)	518, 849, 1146
BshNI	GGYRCC	2 cut(s)	568, 719
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	248
BsiSI	CCGG	3 cut(s)	192, 660, 723
BslFI	GGGAC	3 cut(s)	112, 438, 1083
BslI	CCNNNNNNNGG	2 cut(s)	168, 760
BsmAI	GTCTC	1 cut(s)	1154
BsmBI	CGTCTC	1 cut(s)	1154
BsmFI	GGGAC	3 cut(s)	112, 438, 1083
BsnI	GGCC	3 cut(s)	518, 849, 1146
BsoBI	CYCGRG	1 cut(s)	248
Bsp119I	TTCGAA	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	514, 1050
Bsp1407I	TGTACA	1 cut(s)	819
Bsp143I	GATC	4 cut(s)	239, 689, 696, 838
Bsp19I	CCATGG	1 cut(s)	333
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	3 cut(s)	518, 849, 1146
BspLI	GGNNCC	4 cut(s)	570, 606, 721, 797
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	2 cut(s)	247, 697
BspT104I	TTCGAA	1 cut(s)	391
BspT107I	GGYRCC	2 cut(s)	568, 719
BsrDI	GCAATG	2 cut(s)	195, 651
BsrGI	TGTACA	1 cut(s)	819
BsrI	ACTGG	2 cut(s)	579, 681
BssECI	CCNNGG	5 cut(s)	247, 333, 442, 744, 1065
BssMI	GATC	4 cut(s)	239, 689, 696, 838
BssNI	GRCGYC	1 cut(s)	267
BssSI	CACGAG	1 cut(s)	1049
BssT1I	CCWWGG	4 cut(s)	333, 442, 744, 1065
Bst2BI	CACGAG	1 cut(s)	1049
Bst4CI	ACNGT	2 cut(s)	370, 907
Bst6I	CTCTTC	1 cut(s)	885
BstACI	GRCGYC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	819
BstBI	TTCGAA	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	2 cut(s)	703, 1098
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	1 cut(s)	98
BstKTI	GATC	4 cut(s)	242, 692, 699, 841
BstMAI	GTCTC	1 cut(s)	1154
BstMBI	GATC	4 cut(s)	239, 689, 696, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	42, 164, 566, 855
BstSFI	CTRYAG	1 cut(s)	561
BstV1I	GCAGC	2 cut(s)	187, 469
BstV2I	GAAGAC	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	518, 849, 1146
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	98
BtsIMutI	CAGTG	4 cut(s)	484, 572, 912, 1039
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	1 cut(s)	343
CseI	GACGC	3 cut(s)	173, 256, 340
Csp6I	GTAC	3 cut(s)	820, 903, 935
CviAII	CATG	5 cut(s)	124, 334, 616, 947, 1153
CviQI	GTAC	3 cut(s)	820, 903, 935
DdeI	CTNAG	2 cut(s)	703, 1098
DpnI	GATC	4 cut(s)	241, 691, 698, 840
DpnII	GATC	4 cut(s)	239, 689, 696, 838
EaeI	YGGCCR	1 cut(s)	1144
Eam1104I	CTCTTC	1 cut(s)	885
EarI	CTCTTC	1 cut(s)	885
Eco130I	CCWWGG	4 cut(s)	333, 442, 744, 1065
Eco147I	AGGCCT	1 cut(s)	518
Eco24I	GRGCYC	1 cut(s)	1050
Eco88I	CYCGRG	1 cut(s)	248
EcoT14I	CCWWGG	4 cut(s)	333, 442, 744, 1065
EcoT38I	GRGCYC	1 cut(s)	1050
ErhI	CCWWGG	4 cut(s)	333, 442, 744, 1065
Esp3I	CGTCTC	1 cut(s)	1154
FaeI	CATG	5 cut(s)	127, 337, 619, 950, 1156
FaqI	GGGAC	3 cut(s)	112, 438, 1083
FatI	CATG	5 cut(s)	123, 333, 615, 946, 1152
FauNDI	CATATG	1 cut(s)	50
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	2 cut(s)	201, 483
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	1 cut(s)	1050
Fsp4HI	GCNGC	2 cut(s)	201, 483
FspBI	CTAG	5 cut(s)	38, 224, 551, 800, 1019
GluI	GCNGC	2 cut(s)	201, 483
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	518, 849, 1146
HapII	CCGG	3 cut(s)	192, 660, 723
HgaI	GACGC	3 cut(s)	173, 256, 340
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	5 cut(s)	127, 337, 619, 950, 1156
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	2 cut(s)	663, 1082
HpaII	CCGG	3 cut(s)	192, 660, 723
HphI	GGTGA	6 cut(s)	322, 398, 489, 589, 670, 941
Hpy166II	GTNNAC	1 cut(s)	820
Hpy188I	TCNGA	4 cut(s)	163, 239, 773, 843
Hpy188III	TCNNGA	6 cut(s)	109, 643, 786, 1057, 1086, 1166
Hpy8I	GTNNAC	1 cut(s)	820
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	4 cut(s)	94, 221, 1141, 1167
HpyCH4III	ACNGT	2 cut(s)	370, 907
HpyCH4IV	ACGT	1 cut(s)	980
HpyCH4V	TGCA	4 cut(s)	455, 910, 991, 1037
HpyF10VI	GCNNNNNNNGC	4 cut(s)	42, 164, 566, 855
HpyF3I	CTNAG	2 cut(s)	703, 1098
HpySE526I	ACGT	1 cut(s)	980
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	5 cut(s)	127, 337, 619, 950, 1156
Ksp22I	TGATCA	1 cut(s)	838
Kzo9I	GATC	4 cut(s)	239, 689, 696, 838
LmnI	GCTCC	2 cut(s)	604, 795
Lsp1109I	GCAGC	2 cut(s)	187, 469
LweI	GCATC	2 cut(s)	54, 729
MaeI	CTAG	5 cut(s)	38, 224, 551, 800, 1019
MaeII	ACGT	1 cut(s)	980
MaeIII	GTNAC	3 cut(s)	283, 437, 976
MalI	GATC	4 cut(s)	241, 691, 698, 840
MboI	GATC	4 cut(s)	239, 689, 696, 838
MfeI	CAATTG	2 cut(s)	756, 1041
MhlI	GDGCHC	2 cut(s)	514, 1050
MluCI	AATT	4 cut(s)	272, 631, 756, 1041
MlyI	GAGTC	1 cut(s)	1091
MmeI	TCCRAC	2 cut(s)	186, 338
MnlI	CCTC	9 cut(s)	19, 169, 257, 510, 874, 886, 916, 958, 1082
MseI	TTAA	3 cut(s)	32, 363, 635
MslI	CAYNNNNRTG	2 cut(s)	335, 590
MspI	CCGG	3 cut(s)	192, 660, 723
MunI	CAATTG	2 cut(s)	756, 1041
MwoI	GCNNNNNNNGC	4 cut(s)	42, 164, 566, 855
NcoI	CCATGG	1 cut(s)	333
NdeI	CATATG	1 cut(s)	50
NdeII	GATC	4 cut(s)	239, 689, 696, 838
NlaIII	CATG	5 cut(s)	127, 337, 619, 950, 1156
NlaIV	GGNNCC	4 cut(s)	570, 606, 721, 797
NmuCI	GTSAC	1 cut(s)	976
NspV	TTCGAA	1 cut(s)	391
OliI	CACNNNNGTG	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	663
PkrI	GCNGC	2 cut(s)	202, 484
PleI	GAGTC	1 cut(s)	1090
PpsI	GAGTC	1 cut(s)	1090
PsiI	TTATAA	1 cut(s)	233
PspN4I	GGNNCC	4 cut(s)	570, 606, 721, 797
PsrI	GAACNNNNNNTAC	2 cut(s)	803, 835
RsaI	GTAC	3 cut(s)	821, 904, 936
RsaNI	GTAC	3 cut(s)	820, 903, 935
RseI	CAYNNNNRTG	2 cut(s)	335, 590
SaqAI	TTAA	3 cut(s)	32, 363, 635
SatI	GCNGC	2 cut(s)	201, 483
Sau3AI	GATC	4 cut(s)	239, 689, 696, 838
SchI	GAGTC	1 cut(s)	1091
SduI	GDGCHC	2 cut(s)	514, 1050
SfaNI	GCATC	2 cut(s)	54, 729
SfcI	CTRYAG	1 cut(s)	561
SfuI	TTCGAA	1 cut(s)	391
SmiMI	CAYNNNNRTG	2 cut(s)	335, 590
SmlI	CTYRAG	3 cut(s)	107, 851, 1180
SmoI	CTYRAG	3 cut(s)	107, 851, 1180
SpeI	ACTAGT	1 cut(s)	550
Sse9I	AATT	4 cut(s)	272, 631, 756, 1041
SseBI	AGGCCT	1 cut(s)	518
SsiI	CCGC	1 cut(s)	401
SspI	AATATT	2 cut(s)	321, 639
SspMI	CTAG	5 cut(s)	38, 224, 551, 800, 1019
StuI	AGGCCT	1 cut(s)	518
StyI	CCWWGG	4 cut(s)	333, 442, 744, 1065
TaaI	ACNGT	2 cut(s)	370, 907
TaiI	ACGT	1 cut(s)	983
TaqI	TCGA	1 cut(s)	391
TasI	AATT	4 cut(s)	272, 631, 756, 1041
TatI	WGTACW	3 cut(s)	819, 902, 934
TfiI	GAWTC	1 cut(s)	663
Tru1I	TTAA	3 cut(s)	32, 363, 635
Tru9I	TTAA	3 cut(s)	32, 363, 635
TscAI	CASTG	4 cut(s)	484, 579, 912, 1039
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	2 cut(s)	200, 482
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	2 cut(s)	905, 932
TspRI	CASTG	4 cut(s)	484, 579, 912, 1039
XspI	CTAG	5 cut(s)	38, 224, 551, 800, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.