RLG00000002092

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0003970
Physical Location & Seq
Forward (+)
25301936 .. 25303810
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002092

Sequence Viewer

Length: 627 bp
ATGACCAAGTTGACCATGAAAGTGGAGATGTTGGGAACCGTGGAAGAAGTTGATCATTGTCTTCATTTGGTCAGCATTCACGTGCAGGTGGGAAGAAGCAGTCAATTTGCTAAAGCATTAAGGGATTATGAAATACCCGTGGAGTACGAACTGTTGCTTGAAACCCACCCAGAAAAAACCTGGATCATTACGGTGGGTGCTGGATTGCGGGTGGAAGGTAGAAATTCAATCCAGCTCAAAGACGGTTGGTGGGATTTTGCTTCTGAATGTGAAGTTAGTGAGGTTAACTGTGTCCTGTTTAAGTTGTTGGAGGAAAAAGTGATGTCGGTGTTAATATTTAACCATGACAGTGGTGACTTGGTATTGCCTTCACTTGAGTTTCATTATGATGAAGATAATCCGTTTAAGCTTGGTCCCTCTAATACTAATGCGAATGAGCTAGCGCCATATGAGGCAGTATCGATTAAGCAAGAACCAAATGTGGAGGTGCCAACTCAGGGGTTTTACATGAGATTTGGGCAATCATTTCAATTGGAACAACTACAACACCTTCCAAGTTGCACGGCCACATTTTACGACCGATATGGGGTTAGTAGTAAGCATGAGAAGTTTTTTCACATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.91

Weight (kDa)

4.99

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 76
Acc36I ACCTGC 1 cut(s) 76
AccB1I GGYRCC 1 cut(s) 487
AciI CCGC 1 cut(s) 208
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 564
AcsI RAATTY 1 cut(s) 223
AcvI CACGTG 1 cut(s) 82
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 2 cut(s) 497, 586
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 3 cut(s) 161, 228, 530
AjnI CCWGG 1 cut(s) 179
AluBI AGCT 3 cut(s) 235, 409, 439
AluI AGCT 3 cut(s) 235, 409, 439
AlwI GGATC 1 cut(s) 191
AoxI GGCC 1 cut(s) 564
ApoI RAATTY 1 cut(s) 223
AspLEI GCGC 1 cut(s) 445
AspS9I GGNCC 1 cut(s) 413
AsuHPI GGTGA 1 cut(s) 365
AsuNHI GCTAGC 1 cut(s) 439
AvaII GGWCC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 487
BbrPI CACGTG 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 579
BciT130I CCWGG 1 cut(s) 181
BclI TGATCA 1 cut(s) 52
BfaI CTAG 1 cut(s) 440
BfoI RGCGCY 1 cut(s) 446
BfuAI ACCTGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 1 cut(s) 413
BmiI GGNNCC 3 cut(s) 37, 415, 489
BmrFI CCNGG 1 cut(s) 181
BmtI GCTAGC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 395
Bsa29I ATCGAT 1 cut(s) 461
BsaAI YACGTR 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 39, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 497, 586
BseBI CCWGG 1 cut(s) 181
BseCI ATCGAT 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 39, 138
BseLI CCNNNNNNNGG 2 cut(s) 497, 586
BseMII CTCAG 1 cut(s) 509
BsgI GTGCAG 1 cut(s) 104
Bsh1285I CGRYCG 1 cut(s) 580
BshFI GGCC 1 cut(s) 566
BshNI GGYRCC 1 cut(s) 487
BshVI ATCGAT 1 cut(s) 461
BsiEI CGRYCG 1 cut(s) 580
BslFI GGGAC 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 497, 586
BsmFI GGGAC 1 cut(s) 399
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 1 cut(s) 566
Bsp143I GATC 2 cut(s) 52, 183
BspACI CCGC 1 cut(s) 208
BspANI GGCC 1 cut(s) 566
BspCNI CTCAG 1 cut(s) 508
BspDI ATCGAT 1 cut(s) 461
BspLI GGNNCC 3 cut(s) 37, 415, 489
BspMI ACCTGC 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 443
BspPI GGATC 1 cut(s) 191
BspT107I GGYRCC 1 cut(s) 487
BssECI CCNNGG 2 cut(s) 39, 138
BssMI GATC 2 cut(s) 52, 183
Bst2UI CCWGG 1 cut(s) 181
Bst4CI ACNGT 6 cut(s) 40, 153, 193, 245, 290, 350
BstBAI YACGTR 1 cut(s) 82
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 1 cut(s) 495
BstDSI CCRYGG 2 cut(s) 39, 138
BstH2I RGCGCY 1 cut(s) 446
BstHHI GCGC 1 cut(s) 445
BstKTI GATC 2 cut(s) 55, 186
BstMBI GATC 2 cut(s) 52, 183
BstMCI CGRYCG 1 cut(s) 580
BstNI CCWGG 1 cut(s) 181
BstNSI RCATGY 1 cut(s) 622
BstSCI CCNGG 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 53
BstXI CCANNNNNNTGG 2 cut(s) 22, 350
Bsu15I ATCGAT 1 cut(s) 461
BsuRI GGCC 1 cut(s) 566
BsuTUI ATCGAT 1 cut(s) 461
BtgI CCRYGG 2 cut(s) 39, 138
BtsIMutI CAGTG 1 cut(s) 355
BveI ACCTGC 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 441
CfoI GCGC 1 cut(s) 445
Cfr13I GGNCC 1 cut(s) 413
ClaI ATCGAT 1 cut(s) 461
Csp6I GTAC 1 cut(s) 145
CviAII CATG 5 cut(s) 16, 344, 508, 602, 619
CviJI RGCY 4 cut(s) 235, 409, 439, 566
CviKI_1 RGCY 4 cut(s) 235, 409, 439, 566
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 495
DpnI GATC 2 cut(s) 54, 185
DpnII GATC 2 cut(s) 52, 183
EaeI YGGCCR 1 cut(s) 564
Eco47I GGWCC 1 cut(s) 413
Eco72I CACGTG 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 179
FaeI CATG 5 cut(s) 19, 347, 511, 605, 622
FaqI GGGAC 1 cut(s) 399
FatI CATG 5 cut(s) 15, 343, 507, 601, 618
FauI CCCGC 1 cut(s) 201
FauNDI CATATG 1 cut(s) 448
FbaI TGATCA 1 cut(s) 52
FspBI CTAG 1 cut(s) 440
GlaI GCGC 1 cut(s) 444
HaeII RGCGCY 1 cut(s) 446
HaeIII GGCC 1 cut(s) 566
HhaI GCGC 1 cut(s) 445
Hin1II CATG 5 cut(s) 19, 347, 511, 605, 622
Hin6I GCGC 1 cut(s) 443
HinP1I GCGC 1 cut(s) 443
HincII GTYRAC 2 cut(s) 12, 286
HindII GTYRAC 2 cut(s) 12, 286
HindIII AAGCTT 1 cut(s) 407
HpaI GTTAAC 1 cut(s) 286
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 2 cut(s) 12, 286
Hpy188I TCNGA 1 cut(s) 265
Hpy8I GTNNAC 2 cut(s) 12, 286
HpyAV CCTTC 3 cut(s) 209, 378, 560
HpyCH4III ACNGT 6 cut(s) 40, 153, 193, 245, 290, 350
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 85, 561
HpyF3I CTNAG 1 cut(s) 495
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 5 cut(s) 19, 347, 511, 605, 622
HspAI GCGC 1 cut(s) 443
Ksp22I TGATCA 1 cut(s) 52
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 52, 183
LpnPI CCDG 8 cut(s) 71, 166, 183, 186, 193, 245, 308, 482
MaeI CTAG 1 cut(s) 440
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 353
MalI GATC 2 cut(s) 54, 185
MboI GATC 2 cut(s) 52, 183
MboII GAAGA 4 cut(s) 53, 56, 105, 404
MfeI CAATTG 1 cut(s) 530
MluCI AATT 3 cut(s) 104, 223, 530
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 5 cut(s) 274, 304, 427, 445, 478
MseI TTAA 8 cut(s) 119, 285, 300, 332, 339, 405, 465, 625
MslI CAYNNNNRTG 5 cut(s) 20, 80, 191, 348, 387
MspR9I CCNGG 1 cut(s) 181
MunI CAATTG 1 cut(s) 530
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 181
NdeI CATATG 1 cut(s) 448
NdeII GATC 2 cut(s) 52, 183
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 5 cut(s) 19, 347, 511, 605, 622
NlaIV GGNNCC 3 cut(s) 37, 415, 489
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 622
PaqCI CACCTGC 1 cut(s) 76
PciI ACATGT 1 cut(s) 618
PctI GAATGC 1 cut(s) 75
PmaCI CACGTG 1 cut(s) 82
PmlI CACGTG 1 cut(s) 82
Ppu21I YACGTR 1 cut(s) 82
PscI ACATGT 1 cut(s) 618
Psp6I CCWGG 1 cut(s) 179
PspCI CACGTG 1 cut(s) 82
PspGI CCWGG 1 cut(s) 179
PspN4I GGNNCC 3 cut(s) 37, 415, 489
PspPI GGNCC 1 cut(s) 413
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 5 cut(s) 20, 80, 191, 348, 387
SaqAI TTAA 8 cut(s) 119, 285, 300, 332, 339, 405, 465, 625
Sau3AI GATC 2 cut(s) 52, 183
Sau96I GGNCC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 181
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 5 cut(s) 20, 80, 191, 348, 387
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 3 cut(s) 104, 223, 530
SsiI CCGC 1 cut(s) 208
SspI AATATT 1 cut(s) 336
SspMI CTAG 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 6 cut(s) 40, 153, 193, 245, 290, 350
TaiI ACGT 1 cut(s) 84
TaqI TCGA 1 cut(s) 461
TaqII GACCGA 1 cut(s) 594
TasI AATT 3 cut(s) 104, 223, 530
Tru1I TTAA 8 cut(s) 119, 285, 300, 332, 339, 405, 465, 625
Tru9I TTAA 8 cut(s) 119, 285, 300, 332, 339, 405, 465, 625
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 1 cut(s) 353
Tsp45I GTSAC 1 cut(s) 353
TspDTI ATGAA 5 cut(s) 32, 53, 144, 371, 405
TspGWI ACGGA 1 cut(s) 390
TspRI CASTG 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 413
XapI RAATTY 1 cut(s) 223
XceI RCATGY 1 cut(s) 622
XcmI CCANNNNNNNNNTGG 1 cut(s) 177
XspI CTAG 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.