Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Forward (+)

10037665 .. 10039189

Gene Structure 1525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG122200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAATCACATGTTGACCAATGGGTTGCAGCAAAAAGCGTGGATCACTCTTGCTGGATTACCCGGCAAGATATGGGCTTGTTACCTGATACCTCTTGGGGACGAATATATTGTTGTGGGAGGTTGGCCAAAATTCTTGCGGCATATTAGTGCAGGCAACTCCCACCTCCGACTTATTTTCCAATTCCATTCCACTACAATGACGTTCGTTGTTACTAGGTTTGATTCTTTCGGTCATCTACTGCGCTCCCCACCCGATCTACGCCACTGCAGTGTTCAACCCTCCATAGCTGGCTTGGATCAGCTTAAAGAAGAGTATGTACACAATATTGGAACACACAAGTGGTACGCGGTTGATGAACGGTTGATAATCAATGACGGTCCTTTCCTTCATCGTCTTCGTGAAGCAGGAATTCCATCTTCATACAACCTTCAGCTTGATACCCATCGTGATATATGTTGGACAATACAAGTGGAGAATTATGGTCTTGAAGCATTGCAGTTTGATGACGGCTGGCCCAATTTTGCACACCAAACGGGGTTAAATTCTTCCCACTGTATCAAGTTCAGGCTGCTGGAAGGTCGGCTCATTACGGCCGTCATTTTCCATCGTCGAAAGGGCCATTTGGTGACCCCCGTATTGAGTAATCCCAACCCCGCCACCAGCGGGCCATGGGTCGGTTCTTATCAATCTACTTCGACTGCCGGTCCTTCGAATGCGGGACCCTCCATTTCCCATGCACCTTCCTCCCCAATAGGCCCCAGCTCAGCTGAACTAGGTGCAGTTGATGAACCCGACTGTCCCGAACCATATGTAATTGGACGCGTTTGGCAAATGCAGGTGCATGACCTTATATTGCAGCAGCTCCCATCCTTTCCGACGTGTACCATGATTGTATACGATACTTTCGCTTACTTGCCTCAAAGTTTTGTCCATTCCCAGAACATTGCACTGCGCAAAGATGTGTTCCTGTTCCAGAGTTTTTCAGGAGTTGCAATGCTATTGAAGCTGACTCCGCACTGCGAAACCCTATTTGTCAGCGAGGGGTACCCAGCCTTCAAGCAGCATTTTCAGTTGACAACGAACTCCCCACTTTCACTCCATATGGTTGGAAACACTCATTTTCTTTTCAACGGCCCTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

381

Amino Acids

42.61

Weight (kDa)

6.71

Isoelectric Point (pI)

43.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	829
Acc16I	TGCGCA	1 cut(s)	956
Acc36I	ACCTGC	1 cut(s)	829
Acc65I	GGTACC	1 cut(s)	1047
AccB1I	GGYRCC	1 cut(s)	1047
AccI	GTMKAC	1 cut(s)	897
AccII	CGCG	2 cut(s)	350, 825
AciI	CCGC	6 cut(s)	139, 350, 657, 666, 719, 1016
AclWI	GGATC	2 cut(s)	50, 306
AcoI	YGGCCR	2 cut(s)	125, 594
AcsI	RAATTY	3 cut(s)	131, 411, 544
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	4 cut(s)	321, 347, 886, 1049
AfiI	CCNNNNNNNGG	2 cut(s)	666, 677
AflIII	ACRYGT	3 cut(s)	9, 823, 881
AgsI	TTSAA	5 cut(s)	278, 491, 1006, 1060, 1132
AhdI	GACNNNNNGTC	1 cut(s)	705
AjiI	CACGTC	1 cut(s)	882
AleI	CACNNNNGTG	2 cut(s)	270, 340
AluBI	AGCT	7 cut(s)	290, 304, 436, 765, 770, 865, 1009
AluI	AGCT	7 cut(s)	290, 304, 436, 765, 770, 865, 1009
AlwI	GGATC	2 cut(s)	50, 306
AoxI	GGCC	7 cut(s)	125, 515, 594, 619, 668, 757, 1135
ApeKI	GCWGC	5 cut(s)	28, 571, 859, 862, 1063
ApoI	RAATTY	3 cut(s)	131, 411, 544
Asp718I	GGTACC	1 cut(s)	1047
AspLEI	GCGC	2 cut(s)	246, 957
AspS9I	GGNCC	8 cut(s)	380, 516, 619, 668, 707, 722, 758, 1136
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	640
AsuII	TTCGAA	1 cut(s)	713
AvaII	GGWCC	3 cut(s)	380, 707, 722
BalI	TGGCCA	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	1047
BarI	GAAGNNNNNNTAC	4 cut(s)	303, 335, 1040, 1072
BbsI	GAAGAC	1 cut(s)	389
BbvI	GCAGC	5 cut(s)	40, 558, 871, 874, 1075
BccI	CCATC	4 cut(s)	424, 453, 615, 877
BceAI	ACGGC	3 cut(s)	526, 581, 609
BcnI	CCSGG	1 cut(s)	63
BfaI	CTAG	2 cut(s)	216, 776
BfmI	CTRYAG	1 cut(s)	268
BfuAI	ACCTGC	1 cut(s)	829
BisI	GCNGC	6 cut(s)	29, 140, 572, 860, 863, 1064
BlpI	GCTNAGC	1 cut(s)	766
BlsI	GCNGC	6 cut(s)	30, 141, 573, 861, 864, 1065
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	3 cut(s)	380, 707, 722
BmeRI	GACNNNNNGTC	1 cut(s)	705
BmgBI	CACGTC	1 cut(s)	882
BmgT120I	GGNCC	8 cut(s)	380, 516, 619, 668, 707, 722, 758, 1136
BmiI	GGNNCC	4 cut(s)	723, 724, 760, 1049
BmrFI	CCNGG	1 cut(s)	63
BpiI	GAAGAC	1 cut(s)	389
Bpu1102I	GCTNAGC	1 cut(s)	766
Bpu14I	TTCGAA	1 cut(s)	713
BpuMI	CCSGG	1 cut(s)	63
BsaBI	GATNNNNATC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	671
BsaXI	ACNNNNNCTCC	2 cut(s)	1083, 1113
Bsc4I	CCNNNNNNNGG	2 cut(s)	666, 677
Bse118I	RCCGGY	1 cut(s)	704
Bse3DI	GCAATG	3 cut(s)	494, 945, 1002
Bse8I	GATNNNNATC	1 cut(s)	444
BseDI	CCNNGG	1 cut(s)	671
BseGI	GGATG	1 cut(s)	869
BseJI	GATNNNNATC	1 cut(s)	444
BseLI	CCNNNNNNNGG	2 cut(s)	666, 677
BseMI	GCAATG	3 cut(s)	494, 945, 1002
BseMII	CTCAG	1 cut(s)	780
BseX3I	CGGCCG	1 cut(s)	594
BseXI	GCAGC	5 cut(s)	40, 558, 871, 874, 1075
BseYI	CCCAGC	2 cut(s)	761, 1051
BsgI	GTGCAG	2 cut(s)	171, 801
Bsh1236I	CGCG	2 cut(s)	350, 825
Bsh1285I	CGRYCG	1 cut(s)	597
BshFI	GGCC	7 cut(s)	127, 517, 596, 621, 670, 759, 1137
BshNI	GGYRCC	1 cut(s)	1047
BsiEI	CGRYCG	1 cut(s)	597
BsiSI	CCGG	2 cut(s)	63, 705
BslFI	GGGAC	3 cut(s)	113, 735, 786
BslI	CCNNNNNNNGG	2 cut(s)	666, 677
BsmFI	GGGAC	3 cut(s)	113, 735, 786
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	7 cut(s)	127, 517, 596, 621, 670, 759, 1137
Bsp119I	TTCGAA	1 cut(s)	713
Bsp1407I	TGTACA	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	42, 256, 298
Bsp1720I	GCTNAGC	1 cut(s)	766
Bsp19I	CCATGG	1 cut(s)	671
BspACI	CCGC	6 cut(s)	139, 350, 657, 666, 719, 1016
BspANI	GGCC	7 cut(s)	127, 517, 596, 621, 670, 759, 1137
BspCNI	CTCAG	1 cut(s)	779
BspFNI	CGCG	2 cut(s)	350, 825
BspLI	GGNNCC	4 cut(s)	723, 724, 760, 1049
BspMAI	CTGCAG	1 cut(s)	272
BspMI	ACCTGC	1 cut(s)	829
BspPI	GGATC	2 cut(s)	50, 306
BspT104I	TTCGAA	1 cut(s)	713
BspT107I	GGYRCC	1 cut(s)	1047
BsrDI	GCAATG	3 cut(s)	494, 945, 1002
BsrFI	RCCGGY	1 cut(s)	704
BsrGI	TGTACA	1 cut(s)	319
BssAI	RCCGGY	1 cut(s)	704
BssECI	CCNNGG	1 cut(s)	671
BssMI	GATC	3 cut(s)	42, 256, 298
BssNAI	GTATAC	1 cut(s)	898
BssT1I	CCWWGG	1 cut(s)	671
Bst1107I	GTATAC	1 cut(s)	898
Bst4CI	ACNGT	4 cut(s)	363, 380, 557, 800
Bst6I	CTCTTC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	319
BstBI	TTCGAA	1 cut(s)	713
BstC8I	GCNNGC	4 cut(s)	154, 292, 515, 668
BstDEI	CTNAG	1 cut(s)	766
BstDSI	CCRYGG	1 cut(s)	671
BstEII	GGTNACC	1 cut(s)	628
BstF5I	GGATG	1 cut(s)	869
BstFNI	CGCG	2 cut(s)	350, 825
BstHHI	GCGC	2 cut(s)	246, 957
BstKTI	GATC	3 cut(s)	45, 259, 301
BstMBI	GATC	3 cut(s)	42, 256, 298
BstMCI	CGRYCG	1 cut(s)	597
BstMWI	GCNNNNNNNGC	2 cut(s)	1006, 1015
BstNSI	RCATGY	1 cut(s)	13
BstPI	GGTNACC	1 cut(s)	628
BstSCI	CCNGG	1 cut(s)	61
BstSFI	CTRYAG	1 cut(s)	268
BstUI	CGCG	2 cut(s)	350, 825
BstV1I	GCAGC	5 cut(s)	40, 558, 871, 874, 1075
BstV2I	GAAGAC	1 cut(s)	389
BstXI	CCANNNNNNTGG	1 cut(s)	1109
BstZ17I	GTATAC	1 cut(s)	898
BstZI	CGGCCG	1 cut(s)	594
BsuRI	GGCC	7 cut(s)	127, 517, 596, 621, 670, 759, 1137
BtgI	CCRYGG	1 cut(s)	671
BtrI	CACGTC	1 cut(s)	882
BtsCI	GGATG	1 cut(s)	869
BtsI	GCAGTG	4 cut(s)	265, 277, 950, 1018
BtsIMutI	CAGTG	5 cut(s)	265, 277, 553, 950, 1018
BveI	ACCTGC	1 cut(s)	829
Cac8I	GCNNGC	4 cut(s)	154, 292, 515, 668
CfoI	GCGC	2 cut(s)	246, 957
Cfr10I	RCCGGY	1 cut(s)	704
Cfr13I	GGNCC	8 cut(s)	380, 516, 619, 668, 707, 722, 758, 1136
CseI	GACGC	1 cut(s)	831
Csp6I	GTAC	4 cut(s)	320, 346, 885, 1048
CspCI	CAANNNNNGTGG	4 cut(s)	20, 55, 453, 488
CviAII	CATG	5 cut(s)	10, 672, 737, 845, 889
CviQI	GTAC	4 cut(s)	320, 346, 885, 1048
DdeI	CTNAG	1 cut(s)	766
DpnI	GATC	3 cut(s)	44, 258, 300
DpnII	GATC	3 cut(s)	42, 256, 298
DriI	GACNNNNNGTC	1 cut(s)	705
EaeI	YGGCCR	2 cut(s)	125, 594
EagI	CGGCCG	1 cut(s)	594
Eam1104I	CTCTTC	1 cut(s)	306
Eam1105I	GACNNNNNGTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	306
EclXI	CGGCCG	1 cut(s)	594
Eco130I	CCWWGG	1 cut(s)	671
Eco47I	GGWCC	3 cut(s)	380, 707, 722
Eco52I	CGGCCG	1 cut(s)	594
Eco57I	CTGAAG	1 cut(s)	416
Eco91I	GGTNACC	1 cut(s)	628
EcoO109I	RGGNCCY	2 cut(s)	722, 758
EcoO65I	GGTNACC	1 cut(s)	628
EcoRI	GAATTC	1 cut(s)	411
EcoT14I	CCWWGG	1 cut(s)	671
ErhI	CCWWGG	1 cut(s)	671
FaeI	CATG	5 cut(s)	13, 675, 740, 848, 892
FaqI	GGGAC	3 cut(s)	113, 735, 786
FatI	CATG	5 cut(s)	9, 671, 736, 844, 888
FauI	CCCGC	3 cut(s)	659, 664, 712
FauNDI	CATATG	2 cut(s)	811, 1104
FblI	GTMKAC	1 cut(s)	897
Fnu4HI	GCNGC	6 cut(s)	29, 140, 572, 860, 863, 1064
FokI	GGATG	1 cut(s)	856
Fsp4HI	GCNGC	6 cut(s)	29, 140, 572, 860, 863, 1064
FspBI	CTAG	2 cut(s)	216, 776
FspI	TGCGCA	1 cut(s)	956
GlaI	GCGC	2 cut(s)	245, 956
GluI	GCNGC	6 cut(s)	29, 140, 572, 860, 863, 1064
GsaI	CCCAGC	2 cut(s)	765, 1055
HaeIII	GGCC	7 cut(s)	127, 517, 596, 621, 670, 759, 1137
HapII	CCGG	2 cut(s)	63, 705
HgaI	GACGC	1 cut(s)	831
HhaI	GCGC	2 cut(s)	246, 957
Hin1II	CATG	5 cut(s)	13, 675, 740, 848, 892
Hin6I	GCGC	2 cut(s)	244, 955
HinP1I	GCGC	2 cut(s)	244, 955
HincII	GTYRAC	2 cut(s)	15, 1077
HindII	GTYRAC	2 cut(s)	15, 1077
HinfI	GANTC	3 cut(s)	4, 224, 1012
HpaII	CCGG	2 cut(s)	63, 705
HphI	GGTGA	1 cut(s)	640
Hpy166II	GTNNAC	5 cut(s)	15, 322, 885, 898, 1077
Hpy188I	TCNGA	2 cut(s)	170, 879
Hpy188III	TCNNGA	6 cut(s)	401, 449, 488, 803, 976, 987
Hpy8I	GTNNAC	5 cut(s)	15, 322, 885, 898, 1077
Hpy99I	CGWCG	2 cut(s)	615, 883
HpyAV	CCTTC	6 cut(s)	398, 440, 572, 720, 753, 1066
HpyCH4III	ACNGT	4 cut(s)	363, 380, 557, 800
HpyCH4IV	ACGT	2 cut(s)	203, 881
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1006, 1015
HpyF3I	CTNAG	1 cut(s)	766
HpySE526I	ACGT	2 cut(s)	203, 881
Hsp92II	CATG	5 cut(s)	13, 675, 740, 848, 892
HspAI	GCGC	2 cut(s)	244, 955
KflI	GGGWCCC	1 cut(s)	722
KpnI	GGTACC	1 cut(s)	1051
Kzo9I	GATC	3 cut(s)	42, 256, 298
LmnI	GCTCC	2 cut(s)	251, 870
Lsp1109I	GCAGC	5 cut(s)	40, 558, 871, 874, 1075
MaeI	CTAG	2 cut(s)	216, 776
MaeII	ACGT	2 cut(s)	203, 881
MaeIII	GTNAC	3 cut(s)	80, 211, 628
MalI	GATC	3 cut(s)	44, 258, 300
MboI	GATC	3 cut(s)	42, 256, 298
MboII	GAAGA	4 cut(s)	323, 389, 411, 540
MlsI	TGGCCA	1 cut(s)	127
MluCI	AATT	7 cut(s)	131, 182, 411, 478, 520, 544, 816
MluI	ACGCGT	1 cut(s)	823
MluNI	TGGCCA	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	1006
MmeI	TCCRAC	4 cut(s)	193, 440, 902, 1090
MnlI	CCTC	8 cut(s)	102, 113, 176, 292, 736, 757, 930, 1036
Mox20I	TGGCCA	1 cut(s)	127
MscI	TGGCCA	1 cut(s)	127
MseI	TTAA	2 cut(s)	306, 542
MslI	CAYNNNNRTG	4 cut(s)	147, 197, 270, 340
Msp20I	TGGCCA	1 cut(s)	127
MspA1I	CMGCKG	2 cut(s)	666, 770
MspI	CCGG	2 cut(s)	63, 705
MspR9I	CCNGG	1 cut(s)	63
Mva1269I	GAATGC	1 cut(s)	721
MvnI	CGCG	2 cut(s)	350, 825
MwoI	GCNNNNNNNGC	2 cut(s)	1006, 1015
NciI	CCSGG	1 cut(s)	63
NcoI	CCATGG	1 cut(s)	671
NdeI	CATATG	2 cut(s)	811, 1104
NdeII	GATC	3 cut(s)	42, 256, 298
NlaIII	CATG	5 cut(s)	13, 675, 740, 848, 892
NlaIV	GGNNCC	4 cut(s)	723, 724, 760, 1049
NmuCI	GTSAC	1 cut(s)	628
NsbI	TGCGCA	1 cut(s)	956
NspI	RCATGY	1 cut(s)	13
NspV	TTCGAA	1 cut(s)	713
OliI	CACNNNNGTG	2 cut(s)	270, 340
PaqCI	CACCTGC	1 cut(s)	829
PciI	ACATGT	1 cut(s)	9
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	2 cut(s)	4, 224
PkrI	GCNGC	6 cut(s)	30, 141, 573, 861, 864, 1065
PleI	GAGTC	1 cut(s)	1006
PpsI	GAGTC	1 cut(s)	1006
PpuMI	RGGWCCY	1 cut(s)	722
PscI	ACATGT	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	722
PspEI	GGTNACC	1 cut(s)	628
PspFI	CCCAGC	2 cut(s)	761, 1051
PspN4I	GGNNCC	4 cut(s)	723, 724, 760, 1049
PspPI	GGNCC	8 cut(s)	380, 516, 619, 668, 707, 722, 758, 1136
PspPPI	RGGWCCY	1 cut(s)	722
PstI	CTGCAG	1 cut(s)	272
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	4 cut(s)	321, 347, 886, 1049
RsaNI	GTAC	4 cut(s)	320, 346, 885, 1048
RseI	CAYNNNNRTG	4 cut(s)	147, 197, 270, 340
SaqAI	TTAA	2 cut(s)	306, 542
SatI	GCNGC	6 cut(s)	29, 140, 572, 860, 863, 1064
Sau3AI	GATC	3 cut(s)	42, 256, 298
Sau96I	GGNCC	8 cut(s)	380, 516, 619, 668, 707, 722, 758, 1136
SchI	GAGTC	1 cut(s)	1006
ScrFI	CCNGG	1 cut(s)	63
SfcI	CTRYAG	1 cut(s)	268
SfuI	TTCGAA	1 cut(s)	713
SinI	GGWCC	3 cut(s)	380, 707, 722
SmiMI	CAYNNNNRTG	4 cut(s)	147, 197, 270, 340
Sse9I	AATT	7 cut(s)	131, 182, 411, 478, 520, 544, 816
SsiI	CCGC	6 cut(s)	139, 350, 657, 666, 719, 1016
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	216, 776
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	671
TaaI	ACNGT	4 cut(s)	363, 380, 557, 800
TaiI	ACGT	2 cut(s)	206, 884
TaqI	TCGA	3 cut(s)	613, 698, 713
TaqII	GACCGA	1 cut(s)	221
TasI	AATT	7 cut(s)	131, 182, 411, 478, 520, 544, 816
TatI	WGTACW	1 cut(s)	319
TauI	GCSGC	1 cut(s)	142
TfiI	GAWTC	2 cut(s)	4, 224
Tru1I	TTAA	2 cut(s)	306, 542
Tru9I	TTAA	2 cut(s)	306, 542
TscAI	CASTG	5 cut(s)	272, 277, 560, 957, 1025
TseFI	GTSAC	1 cut(s)	628
TseI	GCWGC	5 cut(s)	28, 571, 859, 862, 1063
Tsp45I	GTSAC	1 cut(s)	628
TspDTI	ATGAA	5 cut(s)	17, 372, 380, 411, 804
TspRI	CASTG	5 cut(s)	272, 277, 560, 957, 1025
VpaK11BI	GGWCC	3 cut(s)	380, 707, 722
XapI	RAATTY	3 cut(s)	131, 411, 544
XceI	RCATGY	1 cut(s)	13
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	897
XspI	CTAG	2 cut(s)	216, 776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.