Rmu_sc0006198.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006198.1
OG0003970
Physical Location & Seq
Forward (+)
76096 .. 77909
1814 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006198.1_g000016.1.cds

Sequence Viewer

Length: 1278 bp
atggagaccagcatgaaccagccgttggttacatatgatctcccgctgttctttgccgaaatcacccgggataagcacaggagttttctaacaattccaccccaattccggatgaatcacatgttgaccaatgggttgcagcaaaaagcgtggatcactcttgctggattacccggcaagatatgggcttgttacctgatacctcttggggacgaatatattgttgtgggaggttggccaaaattcttgcggcatattagtgcaggcaactcccacctccgacttattttccaattccattccactacaatgacgttcgttgttactaggtttgattctttcggtcatctactgcgctccccacccgatctacgccactgcagtgttcaaccctccatagctggcttggatcagcttaaagaagagtatgtacacaatattggaacacacaagtggtacgcggttgatgaacggttgataatcaatgacggtcctttccttcatcgtcttcgtgaagcaggaattccatcttcatacaaccttcagcttgatacccatcgtgatatatgttggacaatacaagtggagaattatggtcttgaagcattgcagtttgatgacggctggcccaattttgcacaccaaacggggttaaattcttcccactgtatcaagttcaggctgctggaaggtcggctcattacggccgtcattttccatcgtcgaaagggccatttggtgacccccgtattgagtaatcccaaccccgccaccagcgggccatgggtcggttcttatcaatctacttcgactgccggtccttcgaatgcgggaccctccatttcccatgcaccttcctccccaataggccccagctcagctgaactaggtgcagttgatgaacccgactgtcccgaaccatatgtaattggacgcgtttggcaaatgcaggtgcatgaccttatattgcagcagctcccatcctttccgacgtgtaccatgattgtatacgatactttcgctgtaagaaatctctctcacatgtacttgcctcaaagttttgtccattcccagaacattgcactgcgcaaagatgtgttcctgttccagagtttttcaggagttgcaatgctattgaagctgactccgcactgcgaaaccctatttgtcagcgaggggtacccagccttcaagcagcattttcagttgacaacgaactccccactttcactccatatggttggaaacactcattttcttttcaacggccctgcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

47.87

Weight (kDa)

6.9

Isoelectric Point (pI)

44.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 940
Acc16I TGCGCA 1 cut(s) 1088
Acc36I ACCTGC 1 cut(s) 940
Acc65I GGTACC 1 cut(s) 1179
AccB1I GGYRCC 1 cut(s) 1179
AccB7I CCANNNNNTGG 1 cut(s) 25
AccI GTMKAC 1 cut(s) 1008
AccII CGCG 2 cut(s) 461, 936
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 7 cut(s) 44, 250, 461, 768, 777, 830, 1148
AclWI GGATC 2 cut(s) 161, 417
AcoI YGGCCR 2 cut(s) 236, 705
AcsI RAATTY 3 cut(s) 242, 522, 655
AcuI CTGAAG 1 cut(s) 527
AfaI GTAC 5 cut(s) 432, 458, 997, 1046, 1181
AfiI CCNNNNNNNGG 4 cut(s) 25, 108, 777, 788
AflIII ACRYGT 4 cut(s) 120, 934, 992, 1041
AgsI TTSAA 5 cut(s) 389, 602, 1138, 1192, 1264
AhdI GACNNNNNGTC 1 cut(s) 816
AjiI CACGTC 1 cut(s) 993
AjuI GAANNNNNNNTTGG 2 cut(s) 8, 40
AleI CACNNNNGTG 2 cut(s) 381, 451
AluBI AGCT 7 cut(s) 401, 415, 547, 876, 881, 976, 1141
AluI AGCT 7 cut(s) 401, 415, 547, 876, 881, 976, 1141
AlwI GGATC 2 cut(s) 161, 417
Ama87I CYCGRG 1 cut(s) 66
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 7 cut(s) 236, 626, 705, 730, 779, 868, 1267
ApeKI GCWGC 5 cut(s) 139, 682, 970, 973, 1195
ApoI RAATTY 3 cut(s) 242, 522, 655
Asp718I GGTACC 1 cut(s) 1179
AspLEI GCGC 2 cut(s) 357, 1089
AspS9I GGNCC 8 cut(s) 491, 627, 730, 779, 818, 833, 869, 1268
AsuC2I CCSGG 3 cut(s) 67, 68, 174
AsuHPI GGTGA 2 cut(s) 55, 751
AsuII TTCGAA 1 cut(s) 824
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 3 cut(s) 491, 818, 833
BalI TGGCCA 1 cut(s) 238
BanI GGYRCC 1 cut(s) 1179
BarI GAAGNNNNNNTAC 4 cut(s) 414, 446, 1172, 1204
BbsI GAAGAC 1 cut(s) 500
BbvI GCAGC 5 cut(s) 151, 669, 982, 985, 1207
BccI CCATC 4 cut(s) 535, 564, 726, 988
BceAI ACGGC 4 cut(s) 7, 637, 692, 720
BcnI CCSGG 3 cut(s) 67, 68, 174
BfaI CTAG 2 cut(s) 327, 887
BfmI CTRYAG 1 cut(s) 379
BfuAI ACCTGC 1 cut(s) 940
BisI GCNGC 6 cut(s) 140, 251, 683, 971, 974, 1196
BlpI GCTNAGC 1 cut(s) 877
BlsI GCNGC 6 cut(s) 141, 252, 684, 972, 975, 1197
Bme1390I CCNGG 3 cut(s) 67, 68, 174
Bme18I GGWCC 3 cut(s) 491, 818, 833
BmeRI GACNNNNNGTC 1 cut(s) 816
BmeT110I CYCGRG 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 993
BmgT120I GGNCC 8 cut(s) 491, 627, 730, 779, 818, 833, 869, 1268
BmiI GGNNCC 4 cut(s) 834, 835, 871, 1181
BmrFI CCNGG 3 cut(s) 67, 68, 174
BpiI GAAGAC 1 cut(s) 500
Bpu1102I GCTNAGC 1 cut(s) 877
Bpu14I TTCGAA 1 cut(s) 824
BpuMI CCSGG 3 cut(s) 67, 68, 174
BsaBI GATNNNNATC 1 cut(s) 555
BsaJI CCNNGG 2 cut(s) 66, 782
BsaWI WCCGGW 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 1215, 1245
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 108, 777, 788
Bse118I RCCGGY 1 cut(s) 815
Bse3DI GCAATG 3 cut(s) 605, 1077, 1134
Bse8I GATNNNNATC 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 66, 782
BseGI GGATG 2 cut(s) 117, 980
BseJI GATNNNNATC 1 cut(s) 555
BseLI CCNNNNNNNGG 4 cut(s) 25, 108, 777, 788
BseMI GCAATG 3 cut(s) 605, 1077, 1134
BseMII CTCAG 1 cut(s) 891
BseX3I CGGCCG 1 cut(s) 705
BseXI GCAGC 5 cut(s) 151, 669, 982, 985, 1207
BseYI CCCAGC 2 cut(s) 872, 1183
BsgI GTGCAG 2 cut(s) 282, 912
Bsh1236I CGCG 2 cut(s) 461, 936
Bsh1285I CGRYCG 1 cut(s) 708
BshFI GGCC 7 cut(s) 238, 628, 707, 732, 781, 870, 1269
BshNI GGYRCC 1 cut(s) 1179
BsiEI CGRYCG 1 cut(s) 708
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 4 cut(s) 67, 109, 174, 816
BslFI GGGAC 3 cut(s) 224, 846, 897
BslI CCNNNNNNNGG 4 cut(s) 25, 108, 777, 788
BsmFI GGGAC 3 cut(s) 224, 846, 897
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 7 cut(s) 238, 628, 707, 732, 781, 870, 1269
BsoBI CYCGRG 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 824
Bsp13I TCCGGA 1 cut(s) 108
Bsp1407I TGTACA 1 cut(s) 430
Bsp143I GATC 4 cut(s) 37, 153, 367, 409
Bsp1720I GCTNAGC 1 cut(s) 877
Bsp19I CCATGG 1 cut(s) 782
BspACI CCGC 7 cut(s) 44, 250, 461, 768, 777, 830, 1148
BspANI GGCC 7 cut(s) 238, 628, 707, 732, 781, 870, 1269
BspCNI CTCAG 1 cut(s) 890
BspEI TCCGGA 1 cut(s) 108
BspFNI CGCG 2 cut(s) 461, 936
BspLI GGNNCC 4 cut(s) 834, 835, 871, 1181
BspMAI CTGCAG 1 cut(s) 383
BspMI ACCTGC 1 cut(s) 940
BspPI GGATC 2 cut(s) 161, 417
BspT104I TTCGAA 1 cut(s) 824
BspT107I GGYRCC 1 cut(s) 1179
BsrDI GCAATG 3 cut(s) 605, 1077, 1134
BsrFI RCCGGY 1 cut(s) 815
BsrGI TGTACA 1 cut(s) 430
BssAI RCCGGY 1 cut(s) 815
BssECI CCNNGG 2 cut(s) 66, 782
BssMI GATC 4 cut(s) 37, 153, 367, 409
BssNAI GTATAC 1 cut(s) 1009
BssT1I CCWWGG 1 cut(s) 782
Bst1107I GTATAC 1 cut(s) 1009
Bst4CI ACNGT 4 cut(s) 474, 491, 668, 911
Bst6I CTCTTC 1 cut(s) 417
BstAUI TGTACA 1 cut(s) 430
BstBI TTCGAA 1 cut(s) 824
BstC8I GCNNGC 4 cut(s) 265, 403, 626, 779
BstDEI CTNAG 1 cut(s) 877
BstDSI CCRYGG 1 cut(s) 782
BstEII GGTNACC 1 cut(s) 739
BstF5I GGATG 2 cut(s) 117, 980
BstFNI CGCG 2 cut(s) 461, 936
BstHHI GCGC 2 cut(s) 357, 1089
BstKTI GATC 4 cut(s) 40, 156, 370, 412
BstMBI GATC 4 cut(s) 37, 153, 367, 409
BstMCI CGRYCG 1 cut(s) 708
BstMWI GCNNNNNNNGC 2 cut(s) 1138, 1147
BstNSI RCATGY 2 cut(s) 124, 1045
BstPI GGTNACC 1 cut(s) 739
BstSCI CCNGG 3 cut(s) 65, 66, 172
BstSFI CTRYAG 1 cut(s) 379
BstUI CGCG 2 cut(s) 461, 936
BstV1I GCAGC 5 cut(s) 151, 669, 982, 985, 1207
BstV2I GAAGAC 1 cut(s) 500
BstXI CCANNNNNNTGG 1 cut(s) 1241
BstZ17I GTATAC 1 cut(s) 1009
BstZI CGGCCG 1 cut(s) 705
BsuRI GGCC 7 cut(s) 238, 628, 707, 732, 781, 870, 1269
BtgI CCRYGG 1 cut(s) 782
BtrI CACGTC 1 cut(s) 993
BtsCI GGATG 2 cut(s) 117, 980
BtsI GCAGTG 4 cut(s) 376, 388, 1082, 1150
BtsIMutI CAGTG 5 cut(s) 376, 388, 664, 1082, 1150
BveI ACCTGC 1 cut(s) 940
Cac8I GCNNGC 4 cut(s) 265, 403, 626, 779
CfoI GCGC 2 cut(s) 357, 1089
Cfr10I RCCGGY 1 cut(s) 815
Cfr13I GGNCC 8 cut(s) 491, 627, 730, 779, 818, 833, 869, 1268
Cfr9I CCCGGG 1 cut(s) 66
CseI GACGC 1 cut(s) 942
Csp6I GTAC 5 cut(s) 431, 457, 996, 1045, 1180
CspCI CAANNNNNGTGG 4 cut(s) 131, 166, 564, 599
CviAII CATG 7 cut(s) 13, 121, 783, 848, 956, 1000, 1042
CviQI GTAC 5 cut(s) 431, 457, 996, 1045, 1180
DdeI CTNAG 1 cut(s) 877
DpnI GATC 4 cut(s) 39, 155, 369, 411
DpnII GATC 4 cut(s) 37, 153, 367, 409
DriI GACNNNNNGTC 1 cut(s) 816
EaeI YGGCCR 2 cut(s) 236, 705
EagI CGGCCG 1 cut(s) 705
Eam1104I CTCTTC 1 cut(s) 417
Eam1105I GACNNNNNGTC 1 cut(s) 816
EarI CTCTTC 1 cut(s) 417
EclXI CGGCCG 1 cut(s) 705
Eco130I CCWWGG 1 cut(s) 782
Eco47I GGWCC 3 cut(s) 491, 818, 833
Eco52I CGGCCG 1 cut(s) 705
Eco57I CTGAAG 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 66
Eco91I GGTNACC 1 cut(s) 739
EcoO109I RGGNCCY 2 cut(s) 833, 869
EcoO65I GGTNACC 1 cut(s) 739
EcoRI GAATTC 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 782
ErhI CCWWGG 1 cut(s) 782
FaeI CATG 7 cut(s) 16, 124, 786, 851, 959, 1003, 1045
FaqI GGGAC 3 cut(s) 224, 846, 897
FatI CATG 7 cut(s) 12, 120, 782, 847, 955, 999, 1041
FauI CCCGC 4 cut(s) 51, 770, 775, 823
FauNDI CATATG 3 cut(s) 34, 922, 1236
FblI GTMKAC 1 cut(s) 1008
Fnu4HI GCNGC 6 cut(s) 140, 251, 683, 971, 974, 1196
FokI GGATG 2 cut(s) 124, 967
Fsp4HI GCNGC 6 cut(s) 140, 251, 683, 971, 974, 1196
FspBI CTAG 2 cut(s) 327, 887
FspI TGCGCA 1 cut(s) 1088
GlaI GCGC 2 cut(s) 356, 1088
GluI GCNGC 6 cut(s) 140, 251, 683, 971, 974, 1196
GsaI CCCAGC 2 cut(s) 876, 1187
HaeIII GGCC 7 cut(s) 238, 628, 707, 732, 781, 870, 1269
HapII CCGG 4 cut(s) 67, 109, 174, 816
HgaI GACGC 1 cut(s) 942
HhaI GCGC 2 cut(s) 357, 1089
Hin1II CATG 7 cut(s) 16, 124, 786, 851, 959, 1003, 1045
Hin6I GCGC 2 cut(s) 355, 1087
HinP1I GCGC 2 cut(s) 355, 1087
HincII GTYRAC 2 cut(s) 126, 1209
HindII GTYRAC 2 cut(s) 126, 1209
HinfI GANTC 3 cut(s) 115, 335, 1144
HpaII CCGG 4 cut(s) 67, 109, 174, 816
HphI GGTGA 2 cut(s) 55, 751
Hpy166II GTNNAC 5 cut(s) 126, 433, 996, 1009, 1209
Hpy188I TCNGA 2 cut(s) 281, 990
Hpy188III TCNNGA 7 cut(s) 109, 512, 560, 599, 914, 1108, 1119
Hpy8I GTNNAC 5 cut(s) 126, 433, 996, 1009, 1209
Hpy99I CGWCG 2 cut(s) 726, 994
HpyAV CCTTC 6 cut(s) 509, 551, 683, 831, 864, 1198
HpyCH4III ACNGT 4 cut(s) 474, 491, 668, 911
HpyCH4IV ACGT 2 cut(s) 314, 992
HpyF10VI GCNNNNNNNGC 2 cut(s) 1138, 1147
HpyF3I CTNAG 1 cut(s) 877
HpySE526I ACGT 2 cut(s) 314, 992
Hsp92II CATG 7 cut(s) 16, 124, 786, 851, 959, 1003, 1045
HspAI GCGC 2 cut(s) 355, 1087
KflI GGGWCCC 1 cut(s) 833
Kpn2I TCCGGA 1 cut(s) 108
KpnI GGTACC 1 cut(s) 1183
Kzo9I GATC 4 cut(s) 37, 153, 367, 409
LmnI GCTCC 2 cut(s) 362, 981
Lsp1109I GCAGC 5 cut(s) 151, 669, 982, 985, 1207
MaeI CTAG 2 cut(s) 327, 887
MaeII ACGT 2 cut(s) 314, 992
MaeIII GTNAC 4 cut(s) 28, 191, 322, 739
MalI GATC 4 cut(s) 39, 155, 369, 411
MboI GATC 4 cut(s) 37, 153, 367, 409
MboII GAAGA 4 cut(s) 434, 500, 522, 651
MlsI TGGCCA 1 cut(s) 238
MluCI AATT 9 cut(s) 93, 104, 242, 293, 522, 589, 631, 655, 927
MluI ACGCGT 1 cut(s) 934
MluNI TGGCCA 1 cut(s) 238
MlyI GAGTC 1 cut(s) 1138
MmeI TCCRAC 4 cut(s) 304, 551, 1013, 1222
MnlI CCTC 8 cut(s) 213, 224, 287, 403, 847, 868, 1062, 1168
Mox20I TGGCCA 1 cut(s) 238
MroI TCCGGA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 238
MseI TTAA 2 cut(s) 417, 653
MslI CAYNNNNRTG 4 cut(s) 258, 308, 381, 451
Msp20I TGGCCA 1 cut(s) 238
MspA1I CMGCKG 3 cut(s) 46, 777, 881
MspI CCGG 4 cut(s) 67, 109, 174, 816
MspR9I CCNGG 3 cut(s) 67, 68, 174
Mva1269I GAATGC 1 cut(s) 832
MvnI CGCG 2 cut(s) 461, 936
MwoI GCNNNNNNNGC 2 cut(s) 1138, 1147
NciI CCSGG 3 cut(s) 67, 68, 174
NcoI CCATGG 1 cut(s) 782
NdeI CATATG 3 cut(s) 34, 922, 1236
NdeII GATC 4 cut(s) 37, 153, 367, 409
NlaIII CATG 7 cut(s) 16, 124, 786, 851, 959, 1003, 1045
NlaIV GGNNCC 4 cut(s) 834, 835, 871, 1181
NmuCI GTSAC 1 cut(s) 739
NsbI TGCGCA 1 cut(s) 1088
NspI RCATGY 2 cut(s) 124, 1045
NspV TTCGAA 1 cut(s) 824
OliI CACNNNNGTG 2 cut(s) 381, 451
PaqCI CACCTGC 1 cut(s) 940
PciI ACATGT 2 cut(s) 120, 1041
PctI GAATGC 1 cut(s) 832
PfeI GAWTC 2 cut(s) 115, 335
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 6 cut(s) 141, 252, 684, 972, 975, 1197
PleI GAGTC 1 cut(s) 1138
PpsI GAGTC 1 cut(s) 1138
PpuMI RGGWCCY 1 cut(s) 833
PscI ACATGT 2 cut(s) 120, 1041
Psp5II RGGWCCY 1 cut(s) 833
PspEI GGTNACC 1 cut(s) 739
PspFI CCCAGC 2 cut(s) 872, 1183
PspN4I GGNNCC 4 cut(s) 834, 835, 871, 1181
PspPI GGNCC 8 cut(s) 491, 627, 730, 779, 818, 833, 869, 1268
PspPPI RGGWCCY 1 cut(s) 833
PstI CTGCAG 1 cut(s) 383
PvuII CAGCTG 1 cut(s) 881
RsaI GTAC 5 cut(s) 432, 458, 997, 1046, 1181
RsaNI GTAC 5 cut(s) 431, 457, 996, 1045, 1180
RseI CAYNNNNRTG 4 cut(s) 258, 308, 381, 451
SaqAI TTAA 2 cut(s) 417, 653
SatI GCNGC 6 cut(s) 140, 251, 683, 971, 974, 1196
Sau3AI GATC 4 cut(s) 37, 153, 367, 409
Sau96I GGNCC 8 cut(s) 491, 627, 730, 779, 818, 833, 869, 1268
SchI GAGTC 1 cut(s) 1138
ScrFI CCNGG 3 cut(s) 67, 68, 174
SfcI CTRYAG 1 cut(s) 379
SfuI TTCGAA 1 cut(s) 824
SinI GGWCC 3 cut(s) 491, 818, 833
SmaI CCCGGG 1 cut(s) 68
SmiMI CAYNNNNRTG 4 cut(s) 258, 308, 381, 451
Sse9I AATT 9 cut(s) 93, 104, 242, 293, 522, 589, 631, 655, 927
SsiI CCGC 7 cut(s) 44, 250, 461, 768, 777, 830, 1148
SspI AATATT 1 cut(s) 439
SspMI CTAG 2 cut(s) 327, 887
StyD4I CCNGG 3 cut(s) 65, 66, 172
StyI CCWWGG 1 cut(s) 782
TaaI ACNGT 4 cut(s) 474, 491, 668, 911
TaiI ACGT 2 cut(s) 317, 995
TaqI TCGA 3 cut(s) 724, 809, 824
TaqII GACCGA 1 cut(s) 332
TasI AATT 9 cut(s) 93, 104, 242, 293, 522, 589, 631, 655, 927
TatI WGTACW 2 cut(s) 430, 1044
TauI GCSGC 1 cut(s) 253
TfiI GAWTC 2 cut(s) 115, 335
Tru1I TTAA 2 cut(s) 417, 653
Tru9I TTAA 2 cut(s) 417, 653
TscAI CASTG 5 cut(s) 383, 388, 671, 1089, 1157
TseFI GTSAC 1 cut(s) 739
TseI GCWGC 5 cut(s) 139, 682, 970, 973, 1195
Tsp45I GTSAC 1 cut(s) 739
TspDTI ATGAA 6 cut(s) 29, 128, 483, 491, 522, 915
TspMI CCCGGG 1 cut(s) 66
TspRI CASTG 5 cut(s) 383, 388, 671, 1089, 1157
Van91I CCANNNNNTGG 1 cut(s) 25
VpaK11BI GGWCC 3 cut(s) 491, 818, 833
XapI RAATTY 3 cut(s) 242, 522, 655
XceI RCATGY 2 cut(s) 124, 1045
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XmaI CCCGGG 1 cut(s) 66
XmiI GTMKAC 1 cut(s) 1008
XspI CTAG 2 cut(s) 327, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.