Rroxscaffold_2G00129070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003970
Physical Location & Seq
Reverse (-)
64909403 .. 64914037
4635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00129070.1

Sequence Viewer

Length: 684 bp
ATGCCTTCTTCGCCGCAACTACGCGGTCGCGCCGACTTGTTTGTGGATGCAATCTCTTCGACGGCGCCGAGCAAAAAGCGTGGATCACTCTTCTTTGGATTACCGGCAAGATTTGGCCTTGTTACGATACCTCTTGGGGACGAATATATTGTTGTGGGAGGTTGGCCAAAATTCTTGCGGCATATTAGTGCAGGCCAATCCCACCTCCGACTTATTTTCCAATTCCATTCCACTACAATGACGTTCGTTGTTACCGGGTTTGATTCTTTCGGTTATCTCTTGCGCTCCCCACCCGATCTACTCCACTGCGGTGTTCAACCCTCCATAGCTGGCTTGGATCAGCTTAAAGAAGAGTATGTACACAATATTGGAACACACAAGTGGTACCCGGTTGATGAACGGTTGATAATCATTGACGGTCCTTTCCTTCATCGTCTTCGTGAAGCGAGAATTCCATCTTCATACAACCTTCGACTTGATACCCATCGTCATATATGTTGGACAATACAAGTGGAGAATTATGGTCTTCAAGCATTGCGGTTTGATGACGGGTGGCCCAATTTTGCACACCAAACCGGGTTAAATTCTTCCCATTGTATCAAGTTCGGTGCTGGAAGGTCGGCTCATTACGGCCGTCATTTTCCATCGTCGAAAGGGCCATTTGGTGACCCCCGTATTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

227

Amino Acids

25.59

Weight (kDa)

9.24

Isoelectric Point (pI)

56.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 384
AccB1I GGYRCC 2 cut(s) 64, 384
AccII CGCG 2 cut(s) 24, 30
AciI CCGC 5 cut(s) 14, 24, 178, 309, 538
AclWI GGATC 2 cut(s) 91, 345
AcoI YGGCCR 2 cut(s) 164, 631
AcsI RAATTY 3 cut(s) 170, 450, 583
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 2 cut(s) 360, 386
AgsI TTSAA 2 cut(s) 317, 530
AleI CACNNNNGTG 2 cut(s) 309, 379
AluBI AGCT 2 cut(s) 329, 343
AluI AGCT 2 cut(s) 329, 343
AlwI GGATC 2 cut(s) 91, 345
AoxI GGCC 6 cut(s) 115, 164, 193, 554, 631, 656
ApoI RAATTY 3 cut(s) 170, 450, 583
Asp718I GGTACC 1 cut(s) 384
AspLEI GCGC 3 cut(s) 32, 67, 285
AspS9I GGNCC 3 cut(s) 419, 555, 656
AsuC2I CCSGG 3 cut(s) 256, 389, 577
AsuHPI GGTGA 1 cut(s) 677
AvaII GGWCC 1 cut(s) 419
BalI TGGCCA 1 cut(s) 166
BanI GGYRCC 2 cut(s) 64, 384
BarI GAAGNNNNNNTAC 2 cut(s) 342, 374
BbsI GAAGAC 2 cut(s) 428, 518
BccI CCATC 3 cut(s) 463, 492, 652
BceAI ACGGC 3 cut(s) 78, 618, 646
BcgI CGANNNNNNTGC 2 cut(s) 39, 73
BcnI CCSGG 3 cut(s) 256, 389, 577
BfoI RGCGCY 1 cut(s) 68
BisI GCNGC 2 cut(s) 14, 179
BlsI GCNGC 2 cut(s) 15, 180
Bme1390I CCNGG 3 cut(s) 256, 389, 577
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 3 cut(s) 419, 555, 656
BmiI GGNNCC 2 cut(s) 66, 386
BmrFI CCNGG 3 cut(s) 256, 389, 577
BmsI GCATC 1 cut(s) 37
BpiI GAAGAC 2 cut(s) 428, 518
BpuMI CCSGG 3 cut(s) 256, 389, 577
BsaBI GATNNNNATC 1 cut(s) 483
BsaHI GRCGYC 1 cut(s) 65
Bse118I RCCGGY 1 cut(s) 103
Bse3DI GCAATG 1 cut(s) 533
Bse8I GATNNNNATC 1 cut(s) 483
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 1 cut(s) 483
BseMI GCAATG 1 cut(s) 533
BseX3I CGGCCG 1 cut(s) 631
BsgI GTGCAG 1 cut(s) 210
Bsh1236I CGCG 2 cut(s) 24, 30
Bsh1285I CGRYCG 2 cut(s) 28, 634
BshFI GGCC 6 cut(s) 117, 166, 195, 556, 633, 658
BshNI GGYRCC 2 cut(s) 64, 384
BsiEI CGRYCG 2 cut(s) 28, 634
BsiSI CCGG 4 cut(s) 104, 255, 389, 576
BslFI GGGAC 1 cut(s) 152
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 6 cut(s) 117, 166, 195, 556, 633, 658
Bsp1407I TGTACA 1 cut(s) 358
Bsp143I GATC 3 cut(s) 83, 295, 337
BspACI CCGC 5 cut(s) 14, 24, 178, 309, 538
BspANI GGCC 6 cut(s) 117, 166, 195, 556, 633, 658
BspFNI CGCG 2 cut(s) 24, 30
BspLI GGNNCC 2 cut(s) 66, 386
BspPI GGATC 2 cut(s) 91, 345
BspT107I GGYRCC 2 cut(s) 64, 384
BsrDI GCAATG 1 cut(s) 533
BsrFI RCCGGY 1 cut(s) 103
BsrGI TGTACA 1 cut(s) 358
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 3 cut(s) 83, 295, 337
BssNI GRCGYC 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 402, 419
Bst6I CTCTTC 3 cut(s) 61, 95, 345
BstACI GRCGYC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 358
BstC8I GCNNGC 2 cut(s) 193, 331
BstEII GGTNACC 1 cut(s) 665
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 2 cut(s) 24, 30
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 3 cut(s) 32, 67, 285
BstKTI GATC 3 cut(s) 86, 298, 340
BstMBI GATC 3 cut(s) 83, 295, 337
BstMCI CGRYCG 2 cut(s) 28, 634
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstPI GGTNACC 1 cut(s) 665
BstSCI CCNGG 3 cut(s) 254, 387, 575
BstUI CGCG 2 cut(s) 24, 30
BstV2I GAAGAC 2 cut(s) 428, 518
BstZI CGGCCG 1 cut(s) 631
BsuRI GGCC 6 cut(s) 117, 166, 195, 556, 633, 658
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 2 cut(s) 193, 331
CfoI GCGC 3 cut(s) 32, 67, 285
Cfr10I RCCGGY 1 cut(s) 103
Cfr13I GGNCC 3 cut(s) 419, 555, 656
Csp6I GTAC 2 cut(s) 359, 385
CspCI CAANNNNNGTGG 4 cut(s) 61, 96, 492, 527
CviQI GTAC 2 cut(s) 359, 385
DinI GGCGCC 1 cut(s) 66
DpnI GATC 3 cut(s) 85, 297, 339
DpnII GATC 3 cut(s) 83, 295, 337
EaeI YGGCCR 2 cut(s) 164, 631
EagI CGGCCG 1 cut(s) 631
Eam1104I CTCTTC 3 cut(s) 61, 95, 345
EarI CTCTTC 3 cut(s) 61, 95, 345
EclXI CGGCCG 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 419
Eco52I CGGCCG 1 cut(s) 631
Eco91I GGTNACC 1 cut(s) 665
EcoO65I GGTNACC 1 cut(s) 665
EcoRI GAATTC 1 cut(s) 450
EgeI GGCGCC 1 cut(s) 66
EheI GGCGCC 1 cut(s) 66
FaiI YATR 9 cut(s) 147, 183, 326, 357, 463, 492, 494, 496, 522
FaqI GGGAC 1 cut(s) 152
Fnu4HI GCNGC 2 cut(s) 14, 179
FokI GGATG 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 14, 179
GlaI GCGC 3 cut(s) 31, 66, 284
GluI GCNGC 2 cut(s) 14, 179
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 6 cut(s) 117, 166, 195, 556, 633, 658
HapII CCGG 4 cut(s) 104, 255, 389, 576
HhaI GCGC 3 cut(s) 32, 67, 285
Hin1I GRCGYC 1 cut(s) 65
Hin6I GCGC 3 cut(s) 30, 65, 283
HinP1I GCGC 3 cut(s) 30, 65, 283
HinfI GANTC 1 cut(s) 263
HpaII CCGG 4 cut(s) 104, 255, 389, 576
HphI GGTGA 1 cut(s) 677
Hpy166II GTNNAC 1 cut(s) 361
Hpy188I TCNGA 1 cut(s) 209
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 1 cut(s) 361
Hpy99I CGWCG 2 cut(s) 64, 652
HpyAV CCTTC 4 cut(s) 15, 437, 479, 609
HpyCH4III ACNGT 2 cut(s) 402, 419
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 50, 191, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 65
HspAI GCGC 3 cut(s) 30, 65, 283
KasI GGCGCC 1 cut(s) 64
KpnI GGTACC 1 cut(s) 388
Kzo9I GATC 3 cut(s) 83, 295, 337
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 7 cut(s) 117, 177, 268, 315, 402, 589, 597
LweI GCATC 1 cut(s) 37
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 3 cut(s) 121, 250, 665
MalI GATC 3 cut(s) 85, 297, 339
MboI GATC 3 cut(s) 83, 295, 337
MboII GAAGA 7 cut(s) 48, 82, 362, 428, 450, 518, 579
MlsI TGGCCA 1 cut(s) 166
MluCI AATT 6 cut(s) 170, 221, 450, 517, 559, 583
MluNI TGGCCA 1 cut(s) 166
Mly113I GGCGCC 1 cut(s) 65
MmeI TCCRAC 2 cut(s) 232, 479
MnlI CCTC 4 cut(s) 141, 152, 215, 331
Mox20I TGGCCA 1 cut(s) 166
MscI TGGCCA 1 cut(s) 166
MseI TTAA 2 cut(s) 345, 581
MslI CAYNNNNRTG 4 cut(s) 186, 236, 309, 379
Msp20I TGGCCA 1 cut(s) 166
MspI CCGG 4 cut(s) 104, 255, 389, 576
MspR9I CCNGG 3 cut(s) 256, 389, 577
MvnI CGCG 2 cut(s) 24, 30
MwoI GCNNNNNNNGC 1 cut(s) 10
NarI GGCGCC 1 cut(s) 65
NciI CCSGG 3 cut(s) 256, 389, 577
NdeII GATC 3 cut(s) 83, 295, 337
NlaIV GGNNCC 2 cut(s) 66, 386
NmeAIII GCCGAG 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 665
OliI CACNNNNGTG 2 cut(s) 309, 379
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 15, 180
PluTI GGCGCC 1 cut(s) 68
PspEI GGTNACC 1 cut(s) 665
PspN4I GGNNCC 2 cut(s) 66, 386
PspPI GGNCC 3 cut(s) 419, 555, 656
RsaI GTAC 2 cut(s) 360, 386
RsaNI GTAC 2 cut(s) 359, 385
RseI CAYNNNNRTG 4 cut(s) 186, 236, 309, 379
SaqAI TTAA 2 cut(s) 345, 581
SatI GCNGC 2 cut(s) 14, 179
Sau3AI GATC 3 cut(s) 83, 295, 337
Sau96I GGNCC 3 cut(s) 419, 555, 656
ScrFI CCNGG 3 cut(s) 256, 389, 577
SetI ASST 8 cut(s) 133, 163, 207, 245, 331, 345, 471, 620
SfaNI GCATC 1 cut(s) 37
SfoI GGCGCC 1 cut(s) 66
SinI GGWCC 1 cut(s) 419
SmiMI CAYNNNNRTG 4 cut(s) 186, 236, 309, 379
Sse9I AATT 6 cut(s) 170, 221, 450, 517, 559, 583
SsiI CCGC 5 cut(s) 14, 24, 178, 309, 538
SspDI GGCGCC 1 cut(s) 64
SspI AATATT 1 cut(s) 367
StyD4I CCNGG 3 cut(s) 254, 387, 575
TaaI ACNGT 2 cut(s) 402, 419
TaiI ACGT 1 cut(s) 245
TaqI TCGA 3 cut(s) 59, 472, 650
TasI AATT 6 cut(s) 170, 221, 450, 517, 559, 583
TatI WGTACW 1 cut(s) 358
TauI GCSGC 2 cut(s) 16, 181
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 345, 581
Tru9I TTAA 2 cut(s) 345, 581
TscAI CASTG 1 cut(s) 311
TseFI GTSAC 1 cut(s) 665
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 3 cut(s) 411, 419, 450
TspRI CASTG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 3 cut(s) 170, 450, 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.