Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003179.1

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

117868 .. 118475

Gene Structure 608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003179.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

atgcagaccaaccacagcaactccttatttatatttgatgtgcccatgttcttcgccgaggtcaccttggagaagcacatgacctttttaaaaattcctccggctttccgggtgagacatttgtcagcgaacggtacgccgctggaagcatggatgactctatctggcctccctgccaagatatggtcatgtagtcttatcccaatgggggacgaatatatgattgtgcgtggttggaaacaattcctggaaaatattagtggcggcaaatctgaactctgccttattttccaactccattctagtacagtgacgtttgtcgttactcagtttgatggattaggtcatctaatgcgaaccccacccgatctcgccgatttcaccattccaccttccgtagacggcttgacacagctaaaggaagagtatgtgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.25

Weight (kDa)

5.65

Isoelectric Point (pI)

28.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	183
AccI	GTMKAC	1 cut(s)	399
AciI	CCGC	2 cut(s)	140, 264
AcsI	RAATTY	1 cut(s)	93
AfaI	GTAC	2 cut(s)	136, 307
AfiI	CCNNNNNNNGG	2 cut(s)	183, 208
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	415
AluI	AGCT	1 cut(s)	415
Alw26I	GTCTC	1 cut(s)	109
AoxI	GGCC	1 cut(s)	166
ApoI	RAATTY	1 cut(s)	93
Asp700I	GAANNNNTTC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	3 cut(s)	55, 124, 373
BaeGI	GKGCMC	1 cut(s)	45
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	1 cut(s)	418
BciT130I	CCWGG	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	1 cut(s)	109
BfaI	CTAG	1 cut(s)	303
BisI	GCNGC	2 cut(s)	140, 265
BlsI	GCNGC	2 cut(s)	141, 266
Bme1390I	CCNGG	2 cut(s)	110, 248
BmrFI	CCNGG	2 cut(s)	110, 248
BoxI	GACNNNNGTC	2 cut(s)	121, 317
BpuMI	CCSGG	1 cut(s)	110
BsaJI	CCNNGG	2 cut(s)	57, 66
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 208
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	57, 66
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	183, 208
BseMII	CTCAG	1 cut(s)	341
BseSI	GKGCMC	1 cut(s)	45
BshFI	GGCC	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	101, 109
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	183, 208
BsmAI	GTCTC	1 cut(s)	109
BsmFI	GGGAC	1 cut(s)	224
BsnI	GGCC	1 cut(s)	168
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	2 cut(s)	140, 264
BspANI	GGCC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	340
BssECI	CCNNGG	2 cut(s)	57, 66
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	134, 310
Bst6I	CTCTTC	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	327
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	159
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	1 cut(s)	109
BstMBI	GATC	1 cut(s)	367
BstNI	CCWGG	1 cut(s)	248
BstPAI	GACNNNNGTC	2 cut(s)	121, 317
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	108, 246
BstSLI	GKGCMC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	168
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	135, 306
CviAII	CATG	4 cut(s)	46, 79, 150, 189
CviJI	RGCY	4 cut(s)	104, 168, 405, 415
CviKI_1	RGCY	4 cut(s)	104, 168, 405, 415
CviQI	GTAC	2 cut(s)	135, 306
DdeI	CTNAG	1 cut(s)	327
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraI	TTTAAA	1 cut(s)	90
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	66
Eco91I	GGTNACC	1 cut(s)	61
EcoO65I	GGTNACC	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	4 cut(s)	49, 82, 153, 192
FaiI	YATR	9 cut(s)	32, 47, 80, 151, 184, 190, 219, 221, 429
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	4 cut(s)	45, 78, 149, 188
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	2 cut(s)	140, 265
FokI	GGATG	1 cut(s)	166
Fsp4HI	GCNGC	2 cut(s)	140, 265
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	2 cut(s)	140, 265
HaeIII	GGCC	1 cut(s)	168
HapII	CCGG	2 cut(s)	101, 109
Hin1II	CATG	4 cut(s)	49, 82, 153, 192
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	2 cut(s)	101, 109
HphI	GGTGA	3 cut(s)	55, 124, 373
Hpy166II	GTNNAC	1 cut(s)	400
Hpy188I	TCNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	400
HpyAV	CCTTC	1 cut(s)	402
HpyCH4III	ACNGT	2 cut(s)	134, 310
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	4 cut(s)	49, 82, 153, 192
Kzo9I	GATC	1 cut(s)	367
LpnPI	CCDG	7 cut(s)	114, 122, 128, 150, 186, 233, 260
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	3 cut(s)	61, 310, 322
MalI	GATC	1 cut(s)	369
MboI	GATC	1 cut(s)	367
MboII	GAAGA	2 cut(s)	43, 434
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	93, 242
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	215, 316
MnlI	CCTC	3 cut(s)	52, 108, 179
MroXI	GAANNNNTTC	1 cut(s)	242
MseI	TTAA	1 cut(s)	89
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	2 cut(s)	101, 109
MspR9I	CCNGG	2 cut(s)	110, 248
MvaI	CCWGG	1 cut(s)	248
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	1 cut(s)	367
NlaIII	CATG	4 cut(s)	49, 82, 153, 192
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	2 cut(s)	61, 310
PdmI	GAANNNNTTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	183
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	2 cut(s)	141, 266
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PshAI	GACNNNNGTC	2 cut(s)	121, 317
Psp6I	CCWGG	1 cut(s)	246
PspEI	GGTNACC	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	246
RsaI	GTAC	2 cut(s)	136, 307
RsaNI	GTAC	2 cut(s)	135, 306
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	2 cut(s)	140, 265
Sau3AI	GATC	1 cut(s)	367
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	110, 248
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	7 cut(s)	63, 68, 86, 317, 346, 394, 417
Sse9I	AATT	2 cut(s)	93, 242
SsiI	CCGC	2 cut(s)	140, 264
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	108, 246
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	134, 310
TaiI	ACGT	1 cut(s)	317
TasI	AATT	2 cut(s)	93, 242
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	2 cut(s)	142, 267
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	2 cut(s)	61, 310
Tsp45I	GTSAC	2 cut(s)	61, 310
TspGWI	ACGGA	1 cut(s)	385
TspRI	CASTG	1 cut(s)	315
Van91I	CCANNNNNTGG	1 cut(s)	183
XapI	RAATTY	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	242
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.