Rh6CG200700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0003970
Physical Location & Seq
Reverse (-)
33506568 .. 33506852
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG200700.1

Sequence Viewer

Length: 285 bp
ATGAGCAAGTTCGGAGGTTCTTCACGGCAAGAAGATGACATTGATGATGTGTGGACGCCAAAGTCAGCGGCAAATCTTCAGGTGTTCCTGACTCGGGGTAAGAAAACGGCCTCGCCAACAGAAAAGGTTAAACCAAGATGTGCCAAAAAACTAAAGACAAAATTAGTATCGGTCGAAGATCATGAAGCTATCGCAAAAACTGATCAGTCTCTAGGCAATGTTAGCCGCATTTATGAAGACGGAGTTGAAGAAGGATTCAACATGTTCAAAATATTTGCCGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.42

Weight (kDa)

8.73

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 61
AccII CGCG 1 cut(s) 281
AciI CCGC 3 cut(s) 68, 226, 279
AcuI CTGAAG 1 cut(s) 62
AcyI GRCGYC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 261
AgsI TTSAA 3 cut(s) 248, 259, 268
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 213
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 1 cut(s) 108
AvaI CYCGRG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 243
BceAI ACGGC 2 cut(s) 41, 123
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 212
BisI GCNGC 3 cut(s) 69, 226, 279
BlsI GCNGC 3 cut(s) 70, 227, 280
BmeT110I CYCGRG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 281
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 1 cut(s) 110
BsiEI CGRYCG 1 cut(s) 174
BsiHKCI CYCGRG 1 cut(s) 93
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 93
Bsp143I GATC 2 cut(s) 178, 202
BspACI CCGC 3 cut(s) 68, 226, 279
BspANI GGCC 1 cut(s) 110
BspFNI CGCG 1 cut(s) 281
BspHI TCATGA 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 223
BssMI GATC 2 cut(s) 178, 202
BssNI GRCGYC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 56
BstFNI CGCG 1 cut(s) 281
BstKTI GATC 2 cut(s) 181, 205
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 2 cut(s) 178, 202
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 1 cut(s) 222
BstNSI RCATGY 1 cut(s) 265
BstUI CGCG 1 cut(s) 281
BstV2I GAAGAC 1 cut(s) 243
BsuRI GGCC 1 cut(s) 110
CciI TCATGA 1 cut(s) 181
CseI GACGC 1 cut(s) 64
CviAII CATG 2 cut(s) 182, 262
CviJI RGCY 3 cut(s) 110, 188, 225
CviKI_1 RGCY 3 cut(s) 110, 188, 225
DpnI GATC 2 cut(s) 180, 204
DpnII GATC 2 cut(s) 178, 202
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 93
FaeI CATG 2 cut(s) 185, 265
FaiI YATR 3 cut(s) 183, 234, 263
FatI CATG 2 cut(s) 181, 261
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 3 cut(s) 69, 226, 279
Fsp4HI GCNGC 3 cut(s) 69, 226, 279
FspBI CTAG 1 cut(s) 212
GluI GCNGC 3 cut(s) 69, 226, 279
HaeIII GGCC 1 cut(s) 110
HgaI GACGC 1 cut(s) 64
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 2 cut(s) 185, 265
HinfI GANTC 2 cut(s) 91, 255
Hpy166II GTNNAC 1 cut(s) 54
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 2 cut(s) 88, 182
Hpy8I GTNNAC 1 cut(s) 54
HpyAV CCTTC 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 2 cut(s) 185, 265
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 2 cut(s) 178, 202
LpnPI CCDG 2 cut(s) 65, 101
MaeI CTAG 1 cut(s) 212
MalI GATC 2 cut(s) 180, 204
MboI GATC 2 cut(s) 178, 202
MboII GAAGA 6 cut(s) 12, 44, 68, 188, 248, 260
MluCI AATT 1 cut(s) 161
MlyI GAGTC 1 cut(s) 85
MnlI CCTC 2 cut(s) 8, 121
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 68
MvnI CGCG 1 cut(s) 281
MwoI GCNNNNNNNGC 1 cut(s) 222
NdeII GATC 2 cut(s) 178, 202
NlaIII CATG 2 cut(s) 185, 265
NspI RCATGY 1 cut(s) 265
PagI TCATGA 1 cut(s) 181
PciI ACATGT 1 cut(s) 261
PfeI GAWTC 1 cut(s) 255
PkrI GCNGC 3 cut(s) 70, 227, 280
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
PscI ACATGT 1 cut(s) 261
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 3 cut(s) 69, 226, 279
Sau3AI GATC 2 cut(s) 178, 202
SchI GAGTC 1 cut(s) 85
SetI ASST 4 cut(s) 19, 84, 129, 190
Sse9I AATT 1 cut(s) 161
SsiI CCGC 3 cut(s) 68, 226, 279
SspI AATATT 1 cut(s) 273
SspMI CTAG 1 cut(s) 212
TaqI TCGA 1 cut(s) 174
TaqII GACCGA 1 cut(s) 160
TasI AATT 1 cut(s) 161
TauI GCSGC 3 cut(s) 71, 228, 281
TfiI GAWTC 1 cut(s) 255
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TspDTI ATGAA 2 cut(s) 198, 249
TspGWI ACGGA 1 cut(s) 255
XceI RCATGY 1 cut(s) 265
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.