Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

39772177 .. 39772539

Gene Structure 363 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG311400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGTCGGTATTGATTTTCAATGCATACACTGGTGCAGCGACGTTGCCAGATTTTGACCGGGGGGGGAGGGGACCTGCTTACGCGATTCATCTGCAAACCCCGGCCACAGTTCATCGTGCAATAGACATGGCCGGCAGTAGTAATGAGTCTGCAATTGATGAGGACGTAAACGATGACGAAGTTTGGCAAGTGCTTGGAGAACTTCCTTTGAGCAAAAACCTACAAGGTTTTACCAATTGCACATGCGTGGTGTACTTTAGCTTCGGGGTTAGTAATCGTGTTGTTATGTGCACCAATATCATGAAACATGCGCAAATAGCAGTATATTGTCATATGAATATTCTTCAATATTGGTTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.32

Weight (kDa)

5.35

Isoelectric Point (pI)

42.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	312
Acc36I	ACCTGC	1 cut(s)	82
AccII	CGCG	1 cut(s)	83
AcoI	YGGCCR	2 cut(s)	102, 129
AfaI	GTAC	1 cut(s)	254
AgsI	TTSAA	2 cut(s)	19, 347
AleI	CACNNNNGTG	1 cut(s)	245
AluBI	AGCT	1 cut(s)	261
AluI	AGCT	1 cut(s)	261
Alw21I	GWGCWC	1 cut(s)	293
Alw44I	GTGCAC	1 cut(s)	289
AoxI	GGCC	2 cut(s)	102, 129
ApaLI	GTGCAC	1 cut(s)	289
ApeKI	GCWGC	1 cut(s)	35
AspLEI	GCGC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	2 cut(s)	59, 101
AvaII	GGWCC	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	293
BarI	GAAGNNNNNNTAC	2 cut(s)	245, 277
Bbv12I	GWGCWC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BcnI	CCSGG	2 cut(s)	59, 101
BfuAI	ACCTGC	1 cut(s)	82
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
Bme1390I	CCNGG	2 cut(s)	59, 101
Bme18I	GGWCC	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	59, 101
BpuMI	CCSGG	2 cut(s)	59, 101
BsaJI	CCNNGG	2 cut(s)	58, 99
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	58, 99
BseNI	ACTGG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	47
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	2 cut(s)	104, 131
BsiHKAI	GWGCWC	1 cut(s)	293
BsiSI	CCGG	3 cut(s)	58, 101, 132
BslFI	GGGAC	1 cut(s)	84
BsmFI	GGGAC	1 cut(s)	84
BsnI	GGCC	2 cut(s)	104, 131
Bsp1286I	GDGCHC	1 cut(s)	293
BspANI	GGCC	2 cut(s)	104, 131
BspFNI	CGCG	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	72
BspMI	ACCTGC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	34
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	58, 99
Bst4CI	ACNGT	1 cut(s)	109
BstC8I	GCNNGC	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	313
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstNSI	RCATGY	2 cut(s)	246, 311
BstSCI	CCNGG	2 cut(s)	57, 99
BstSLI	GKGCMC	1 cut(s)	293
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	47
BsuRI	GGCC	2 cut(s)	104, 131
BtsIMutI	CAGTG	1 cut(s)	27
BveI	ACCTGC	1 cut(s)	82
Cac8I	GCNNGC	1 cut(s)	133
CciI	TCATGA	1 cut(s)	300
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	4 cut(s)	127, 243, 301, 308
CviJI	RGCY	3 cut(s)	104, 131, 261
CviKI_1	RGCY	3 cut(s)	104, 131, 261
CviQI	GTAC	1 cut(s)	253
EaeI	YGGCCR	2 cut(s)	102, 129
Eco47I	GGWCC	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	71
EcoT22I	ATGCAT	1 cut(s)	25
FaeI	CATG	4 cut(s)	130, 246, 304, 311
FaiI	YATR	9 cut(s)	25, 128, 244, 287, 302, 309, 325, 333, 335
FaqI	GGGAC	1 cut(s)	84
FatI	CATG	4 cut(s)	126, 242, 300, 307
FauNDI	CATATG	1 cut(s)	333
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
FspI	TGCGCA	1 cut(s)	312
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	36
HaeIII	GGCC	2 cut(s)	104, 131
HapII	CCGG	3 cut(s)	58, 101, 132
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	4 cut(s)	130, 246, 304, 311
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	2 cut(s)	85, 146
HpaII	CCGG	3 cut(s)	58, 101, 132
Hpy166II	GTNNAC	3 cut(s)	169, 253, 291
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	3 cut(s)	169, 253, 291
Hpy99I	CGWCG	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	2 cut(s)	41, 165
HpyCH4V	TGCA	7 cut(s)	23, 35, 94, 119, 152, 240, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpySE526I	ACGT	2 cut(s)	41, 165
Hsp92II	CATG	4 cut(s)	130, 246, 304, 311
HspAI	GCGC	1 cut(s)	311
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
LpnPI	CCDG	6 cut(s)	15, 60, 71, 87, 114, 145
Lsp1109I	GCAGC	1 cut(s)	47
MaeII	ACGT	2 cut(s)	41, 165
MboII	GAAGA	1 cut(s)	335
MfeI	CAATTG	2 cut(s)	153, 235
MhlI	GDGCHC	1 cut(s)	293
MluCI	AATT	2 cut(s)	153, 235
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	2 cut(s)	60, 154
Mph1103I	ATGCAT	1 cut(s)	25
MroNI	GCCGGC	1 cut(s)	131
MseI	TTAA	1 cut(s)	357
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	3 cut(s)	58, 101, 132
MspR9I	CCNGG	2 cut(s)	59, 101
MunI	CAATTG	2 cut(s)	153, 235
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	317
NaeI	GCCGGC	1 cut(s)	133
NciI	CCSGG	2 cut(s)	59, 101
NdeI	CATATG	1 cut(s)	333
NgoMIV	GCCGGC	1 cut(s)	131
NlaIII	CATG	4 cut(s)	130, 246, 304, 311
NlaIV	GGNNCC	1 cut(s)	72
NsbI	TGCGCA	1 cut(s)	312
NsiI	ATGCAT	1 cut(s)	25
NspI	RCATGY	2 cut(s)	246, 311
OliI	CACNNNNGTG	1 cut(s)	245
PagI	TCATGA	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	133
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	37
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	71
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	71
PspPPI	RGGWCCY	1 cut(s)	71
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
RseI	CAYNNNNRTG	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	357
SatI	GCNGC	1 cut(s)	36
Sau96I	GGNCC	1 cut(s)	71
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	59, 101
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	6 cut(s)	44, 76, 168, 222, 229, 263
SinI	GGWCC	1 cut(s)	71
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	153, 235
SspI	AATATT	2 cut(s)	340, 350
StyD4I	CCNGG	2 cut(s)	57, 99
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	2 cut(s)	44, 168
TasI	AATT	2 cut(s)	153, 235
TatI	WGTACW	1 cut(s)	252
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	357
Tru9I	TTAA	1 cut(s)	357
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	35
TspDTI	ATGAA	4 cut(s)	77, 101, 317, 350
TspRI	CASTG	1 cut(s)	34
VneI	GTGCAC	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	71
XceI	RCATGY	2 cut(s)	246, 311
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.