Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr6g0270511 |
| rosa_laevigata | RLG00000002092 RLG00000013784 |
| rosa_multiflora | Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016 |
| rosa_roxburghii | Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700 |
| rosa_samantha | Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000 |
| rosa_wichuraiana | Rw2G031700 Rw6G016580 Rw6G017120 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 199 |
| AccII | CGCG | 1 cut(s) | 550 |
| AciI | CCGC | 1 cut(s) | 400 |
| AclWI | GGATC | 1 cut(s) | 274 |
| AcsI | RAATTY | 1 cut(s) | 320 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AfaI | GTAC | 1 cut(s) | 530 |
| AgsI | TTSAA | 4 cut(s) | 248, 424, 545, 557 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 212, 244, 364, 396 |
| AlwI | GGATC | 1 cut(s) | 274 |
| ApeKI | GCWGC | 1 cut(s) | 257 |
| ApoI | RAATTY | 1 cut(s) | 320 |
| AseI | ATTAAT | 1 cut(s) | 264 |
| AspLEI | GCGC | 4 cut(s) | 200, 210, 526, 552 |
| AspS9I | GGNCC | 1 cut(s) | 216 |
| AsuHPI | GGTGA | 2 cut(s) | 110, 196 |
| AsuII | TTCGAA | 1 cut(s) | 231 |
| AvaII | GGWCC | 1 cut(s) | 216 |
| BbsI | GAAGAC | 2 cut(s) | 281, 372 |
| BbvI | GCAGC | 1 cut(s) | 244 |
| BccI | CCATC | 3 cut(s) | 263, 370, 492 |
| BciVI | GTATCC | 1 cut(s) | 443 |
| BfaI | CTAG | 1 cut(s) | 565 |
| BfuI | GTATCC | 1 cut(s) | 443 |
| BisI | GCNGC | 1 cut(s) | 258 |
| BlsI | GCNGC | 1 cut(s) | 259 |
| Bme18I | GGWCC | 1 cut(s) | 216 |
| BmgT120I | GGNCC | 1 cut(s) | 216 |
| BmiI | GGNNCC | 1 cut(s) | 217 |
| BpiI | GAAGAC | 2 cut(s) | 281, 372 |
| Bpu14I | TTCGAA | 1 cut(s) | 231 |
| BpuEI | CTTGAG | 1 cut(s) | 151 |
| Bsa29I | ATCGAT | 1 cut(s) | 487 |
| BsaAI | YACGTR | 1 cut(s) | 480 |
| Bse118I | RCCGGY | 1 cut(s) | 520 |
| Bse1I | ACTGG | 1 cut(s) | 510 |
| Bse3DI | GCAATG | 1 cut(s) | 217 |
| BseCI | ATCGAT | 1 cut(s) | 487 |
| BseMI | GCAATG | 1 cut(s) | 217 |
| BseNI | ACTGG | 1 cut(s) | 510 |
| BseXI | GCAGC | 1 cut(s) | 244 |
| Bsh1236I | CGCG | 1 cut(s) | 550 |
| BshVI | ATCGAT | 1 cut(s) | 487 |
| BsiSI | CCGG | 1 cut(s) | 521 |
| BslFI | GGGAC | 1 cut(s) | 229 |
| BsmFI | GGGAC | 1 cut(s) | 229 |
| Bsp119I | TTCGAA | 1 cut(s) | 231 |
| Bsp143I | GATC | 2 cut(s) | 279, 286 |
| BspACI | CCGC | 1 cut(s) | 400 |
| BspDI | ATCGAT | 1 cut(s) | 487 |
| BspFNI | CGCG | 1 cut(s) | 550 |
| BspLI | GGNNCC | 1 cut(s) | 217 |
| BspPI | GGATC | 1 cut(s) | 274 |
| BspT104I | TTCGAA | 1 cut(s) | 231 |
| BsrDI | GCAATG | 1 cut(s) | 217 |
| BsrFI | RCCGGY | 1 cut(s) | 520 |
| BsrI | ACTGG | 1 cut(s) | 510 |
| BssAI | RCCGGY | 1 cut(s) | 520 |
| BssMI | GATC | 2 cut(s) | 279, 286 |
| Bst4CI | ACNGT | 1 cut(s) | 537 |
| BstBAI | YACGTR | 1 cut(s) | 480 |
| BstBI | TTCGAA | 1 cut(s) | 231 |
| BstC8I | GCNNGC | 1 cut(s) | 87 |
| BstDEI | CTNAG | 1 cut(s) | 458 |
| BstFNI | CGCG | 1 cut(s) | 550 |
| BstHHI | GCGC | 4 cut(s) | 200, 210, 526, 552 |
| BstKTI | GATC | 2 cut(s) | 282, 289 |
| BstMBI | GATC | 2 cut(s) | 279, 286 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 41 |
| BstUI | CGCG | 1 cut(s) | 550 |
| BstV1I | GCAGC | 1 cut(s) | 244 |
| BstV2I | GAAGAC | 2 cut(s) | 281, 372 |
| Bsu15I | ATCGAT | 1 cut(s) | 487 |
| BsuI | GTATCC | 1 cut(s) | 443 |
| BsuTUI | ATCGAT | 1 cut(s) | 487 |
| BtsIMutI | CAGTG | 2 cut(s) | 390, 533 |
| Cac8I | GCNNGC | 1 cut(s) | 87 |
| CfoI | GCGC | 4 cut(s) | 200, 210, 526, 552 |
| Cfr10I | RCCGGY | 1 cut(s) | 520 |
| Cfr13I | GGNCC | 1 cut(s) | 216 |
| ClaI | ATCGAT | 1 cut(s) | 487 |
| Csp6I | GTAC | 1 cut(s) | 529 |
| CviAII | CATG | 1 cut(s) | 95 |
| CviJI | RGCY | 4 cut(s) | 19, 35, 89, 257 |
| CviKI_1 | RGCY | 4 cut(s) | 19, 35, 89, 257 |
| CviQI | GTAC | 1 cut(s) | 529 |
| DdeI | CTNAG | 1 cut(s) | 458 |
| DpnI | GATC | 2 cut(s) | 281, 288 |
| DpnII | GATC | 2 cut(s) | 279, 286 |
| DraI | TTTAAA | 2 cut(s) | 168, 298 |
| Eco47I | GGWCC | 1 cut(s) | 216 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| FaeI | CATG | 1 cut(s) | 98 |
| FaiI | YATR | 9 cut(s) | 16, 39, 67, 96, 190, 224, 303, 317, 404 |
| FaqI | GGGAC | 1 cut(s) | 229 |
| FatI | CATG | 1 cut(s) | 94 |
| Fnu4HI | GCNGC | 1 cut(s) | 258 |
| Fsp4HI | GCNGC | 1 cut(s) | 258 |
| FspBI | CTAG | 1 cut(s) | 565 |
| FspI | TGCGCA | 1 cut(s) | 199 |
| GlaI | GCGC | 4 cut(s) | 199, 209, 525, 551 |
| GluI | GCNGC | 1 cut(s) | 258 |
| HapII | CCGG | 1 cut(s) | 521 |
| HhaI | GCGC | 4 cut(s) | 200, 210, 526, 552 |
| Hin1II | CATG | 1 cut(s) | 98 |
| Hin6I | GCGC | 4 cut(s) | 198, 208, 524, 550 |
| HinP1I | GCGC | 4 cut(s) | 198, 208, 524, 550 |
| HinfI | GANTC | 1 cut(s) | 60 |
| HpaII | CCGG | 1 cut(s) | 521 |
| HphI | GGTGA | 2 cut(s) | 110, 196 |
| Hpy166II | GTNNAC | 1 cut(s) | 531 |
| Hpy8I | GTNNAC | 1 cut(s) | 531 |
| HpyAV | CCTTC | 2 cut(s) | 159, 299 |
| HpyCH4III | ACNGT | 1 cut(s) | 537 |
| HpyCH4IV | ACGT | 2 cut(s) | 441, 479 |
| HpyCH4V | TGCA | 5 cut(s) | 44, 72, 78, 85, 144 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 41 |
| HpyF3I | CTNAG | 1 cut(s) | 458 |
| HpySE526I | ACGT | 2 cut(s) | 441, 479 |
| Hsp92II | CATG | 1 cut(s) | 98 |
| HspAI | GCGC | 4 cut(s) | 198, 208, 524, 550 |
| Kzo9I | GATC | 2 cut(s) | 279, 286 |
| LpnPI | CCDG | 5 cut(s) | 5, 71, 167, 491, 534 |
| Lsp1109I | GCAGC | 1 cut(s) | 244 |
| MaeI | CTAG | 1 cut(s) | 565 |
| MaeII | ACGT | 2 cut(s) | 441, 479 |
| MaeIII | GTNAC | 3 cut(s) | 328, 461, 501 |
| MalI | GATC | 2 cut(s) | 281, 288 |
| MboI | GATC | 2 cut(s) | 279, 286 |
| MboII | GAAGA | 3 cut(s) | 286, 357, 372 |
| MluCI | AATT | 7 cut(s) | 79, 201, 248, 291, 320, 431, 474 |
| MmeI | TCCRAC | 1 cut(s) | 393 |
| MseI | TTAA | 3 cut(s) | 167, 264, 297 |
| MspI | CCGG | 1 cut(s) | 521 |
| MvnI | CGCG | 1 cut(s) | 550 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 41 |
| NdeII | GATC | 2 cut(s) | 279, 286 |
| NlaIII | CATG | 1 cut(s) | 98 |
| NlaIV | GGNNCC | 1 cut(s) | 217 |
| NmuCI | GTSAC | 1 cut(s) | 461 |
| NsbI | TGCGCA | 1 cut(s) | 199 |
| NspV | TTCGAA | 1 cut(s) | 231 |
| PfeI | GAWTC | 1 cut(s) | 60 |
| PkrI | GCNGC | 1 cut(s) | 259 |
| Ppu21I | YACGTR | 1 cut(s) | 480 |
| PshBI | ATTAAT | 1 cut(s) | 264 |
| PspN4I | GGNNCC | 1 cut(s) | 217 |
| PspPI | GGNCC | 1 cut(s) | 216 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 521, 553 |
| RsaI | GTAC | 1 cut(s) | 530 |
| RsaNI | GTAC | 1 cut(s) | 529 |
| SaqAI | TTAA | 3 cut(s) | 167, 264, 297 |
| SatI | GCNGC | 1 cut(s) | 258 |
| Sau3AI | GATC | 2 cut(s) | 279, 286 |
| Sau96I | GGNCC | 1 cut(s) | 216 |
| SetI | ASST | 9 cut(s) | 186, 241, 397, 422, 444, 459, 468, 482, 566 |
| SfuI | TTCGAA | 1 cut(s) | 231 |
| SinI | GGWCC | 1 cut(s) | 216 |
| SmlI | CTYRAG | 1 cut(s) | 130 |
| SmoI | CTYRAG | 1 cut(s) | 130 |
| Sse9I | AATT | 7 cut(s) | 79, 201, 248, 291, 320, 431, 474 |
| SsiI | CCGC | 1 cut(s) | 400 |
| SspMI | CTAG | 1 cut(s) | 565 |
| TaaI | ACNGT | 1 cut(s) | 537 |
| TaiI | ACGT | 2 cut(s) | 444, 482 |
| TaqI | TCGA | 2 cut(s) | 231, 487 |
| TaqII | GACCGA | 2 cut(s) | 72, 366 |
| TasI | AATT | 7 cut(s) | 79, 201, 248, 291, 320, 431, 474 |
| TatI | WGTACW | 1 cut(s) | 528 |
| TfiI | GAWTC | 1 cut(s) | 60 |
| Tru1I | TTAA | 3 cut(s) | 167, 264, 297 |
| Tru9I | TTAA | 3 cut(s) | 167, 264, 297 |
| TscAI | CASTG | 2 cut(s) | 390, 540 |
| TseFI | GTSAC | 1 cut(s) | 461 |
| TseI | GCWGC | 1 cut(s) | 257 |
| Tsp45I | GTSAC | 1 cut(s) | 461 |
| TspDTI | ATGAA | 4 cut(s) | 318, 332, 357, 528 |
| TspRI | CASTG | 2 cut(s) | 390, 540 |
| VpaK11BI | GGWCC | 1 cut(s) | 216 |
| VspI | ATTAAT | 1 cut(s) | 264 |
| XapI | RAATTY | 1 cut(s) | 320 |
| XspI | CTAG | 1 cut(s) | 565 |