Rh7CG386000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0003970
Physical Location & Seq
Forward (+)
48794884 .. 48797538
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG386000.1

Sequence Viewer

Length: 606 bp
ATGGATAGAATACCCCCCAACTTCATGGCTTGGACTTCTGTCAACGATACAAGTCGAGTGACCTATTTAGCTCTAAATGGTGTACCTGAAATGTCTTGGGAGTGTACTATAGTCGAATGCGGAACCGAGTCTTATTTTGTCAATGGTTGGGTTGCTTTTTGTATGGCAATTAATGATGGGAATTTAAGAGTACACTACATTTTCAAATACGAGGGCCCTAACATGCGGTTCACCATTACAAGGTATTCAGAAGAAGGGAATCTCATTAGATCTATTCCTAATTTGTCAGACATGGCTTATCTTATCACTATCCGTGGCCTCGAACTACTAGAGGATGAATTGTTTTACTATGTTGGAAGTGATGCCACTAACTCCGCGGCTCTCCCTCGAATATTTGTGGAATCTGAGCTACAGCATGATGAGGGGTGGTTTACAATCCAAACTATAGACGGAGTATCAACAATGGTGAAATTTCTTAAAGTGGAAGATACGTTGCATCTTATGGTTAATTATCTGCCTTTCAAAAAGTACTTTGCGTTTAGGAATGGATCAACCATCCGCGTGTACCTGGTCGCCTCCAAGCTGTTTGTCTTCCACCGTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

23.25

Weight (kDa)

5.22

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 377, 561
AciI CCGC 5 cut(s) 120, 226, 375, 377, 559
AclWI GGATC 1 cut(s) 556
AcsI RAATTY 2 cut(s) 181, 470
AfaI GTAC 5 cut(s) 84, 106, 192, 530, 566
AfiI CCNNNNNNNGG 1 cut(s) 240
AgsI TTSAA 2 cut(s) 205, 523
AjnI CCWGG 1 cut(s) 567
AluBI AGCT 3 cut(s) 71, 409, 583
AluI AGCT 3 cut(s) 71, 409, 583
AlwI GGATC 1 cut(s) 556
AoxI GGCC 2 cut(s) 214, 316
ApaI GGGCCC 1 cut(s) 218
ApoI RAATTY 2 cut(s) 181, 470
AseI ATTAAT 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 214, 215
AsuHPI GGTGA 2 cut(s) 223, 478
BaeGI GKGCMC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 583
BccI CCATC 2 cut(s) 170, 563
BciT130I CCWGG 1 cut(s) 569
BfaI CTAG 1 cut(s) 329
BfmI CTRYAG 3 cut(s) 108, 410, 444
BglII AGATCT 1 cut(s) 269
BisI GCNGC 1 cut(s) 378
BlsI GCNGC 1 cut(s) 379
BmcAI AGTACT 1 cut(s) 530
Bme1390I CCNGG 1 cut(s) 569
BmgT120I GGNCC 2 cut(s) 214, 215
BmiI GGNNCC 2 cut(s) 124, 216
BmrFI CCNGG 1 cut(s) 569
BmsI GCATC 2 cut(s) 352, 505
BoxI GACNNNNGTC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 583
BsaJI CCNNGG 2 cut(s) 313, 375
Bsc4I CCNNNNNNNGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 2 cut(s) 313, 375
BseGI GGATG 2 cut(s) 340, 555
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 396
BseSI GKGCMC 1 cut(s) 218
Bsh1236I CGCG 2 cut(s) 377, 561
BshFI GGCC 2 cut(s) 216, 318
BslI CCNNNNNNNGG 1 cut(s) 240
BsmI GAATGC 1 cut(s) 122
BsnI GGCC 2 cut(s) 216, 318
Bsp120I GGGCCC 1 cut(s) 214
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 2 cut(s) 269, 548
BspACI CCGC 5 cut(s) 120, 226, 375, 377, 559
BspANI GGCC 2 cut(s) 216, 318
BspCNI CTCAG 1 cut(s) 397
BspFNI CGCG 2 cut(s) 377, 561
BspLI GGNNCC 2 cut(s) 124, 216
BspPI GGATC 1 cut(s) 556
BssECI CCNNGG 2 cut(s) 313, 375
BssMI GATC 2 cut(s) 269, 548
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 1 cut(s) 599
BstDEI CTNAG 1 cut(s) 405
BstDSI CCRYGG 2 cut(s) 313, 375
BstF5I GGATG 2 cut(s) 340, 555
BstFNI CGCG 2 cut(s) 377, 561
BstKTI GATC 2 cut(s) 272, 551
BstMBI GATC 2 cut(s) 269, 548
BstNI CCWGG 1 cut(s) 569
BstNSI RCATGY 1 cut(s) 226
BstPAI GACNNNNGTC 1 cut(s) 38
BstSCI CCNGG 1 cut(s) 567
BstSFI CTRYAG 3 cut(s) 108, 410, 444
BstSLI GKGCMC 1 cut(s) 218
BstUI CGCG 2 cut(s) 377, 561
BstV2I GAAGAC 1 cut(s) 583
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 25
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 2 cut(s) 216, 318
BtgI CCRYGG 2 cut(s) 313, 375
BtsCI GGATG 2 cut(s) 340, 555
Cfr13I GGNCC 2 cut(s) 214, 215
Cfr42I CCGCGG 1 cut(s) 378
CsiI ACCWGGT 1 cut(s) 567
Csp6I GTAC 5 cut(s) 83, 105, 191, 529, 565
CspCI CAANNNNNGTGG 1 cut(s) 584
CviAII CATG 4 cut(s) 25, 223, 292, 416
CviJI RGCY 8 cut(s) 29, 71, 216, 296, 318, 380, 409, 583
CviKI_1 RGCY 8 cut(s) 29, 71, 216, 296, 318, 380, 409, 583
CviQI GTAC 5 cut(s) 83, 105, 191, 529, 565
DdeI CTNAG 1 cut(s) 405
DpnI GATC 2 cut(s) 271, 550
DpnII GATC 2 cut(s) 269, 548
Eco24I GRGCYC 1 cut(s) 218
EcoO109I RGGNCCY 2 cut(s) 214, 215
EcoRII CCWGG 1 cut(s) 567
EcoT38I GRGCYC 1 cut(s) 218
FaeI CATG 4 cut(s) 28, 226, 295, 419
FaiI YATR 9 cut(s) 26, 110, 164, 224, 293, 351, 417, 446, 503
FatI CATG 4 cut(s) 24, 222, 291, 415
Fnu4HI GCNGC 1 cut(s) 378
FokI GGATG 2 cut(s) 347, 542
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 378
FspBI CTAG 1 cut(s) 329
GluI GCNGC 1 cut(s) 378
HaeIII GGCC 2 cut(s) 216, 318
Hin1II CATG 4 cut(s) 28, 226, 295, 419
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HinfI GANTC 3 cut(s) 128, 259, 401
HphI GGTGA 2 cut(s) 223, 478
Hpy166II GTNNAC 7 cut(s) 43, 83, 105, 193, 231, 432, 565
Hpy188I TCNGA 3 cut(s) 250, 289, 406
Hpy8I GTNNAC 7 cut(s) 43, 83, 105, 193, 231, 432, 565
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 1 cut(s) 496
HpyF3I CTNAG 1 cut(s) 405
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 4 cut(s) 28, 226, 295, 419
KspI CCGCGG 1 cut(s) 378
Kzo9I GATC 2 cut(s) 269, 548
LpnPI CCDG 3 cut(s) 99, 554, 581
LweI GCATC 2 cut(s) 352, 505
MabI ACCWGGT 1 cut(s) 567
MaeI CTAG 1 cut(s) 329
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 1 cut(s) 58
MalI GATC 2 cut(s) 271, 550
MboI GATC 2 cut(s) 269, 548
MboII GAAGA 3 cut(s) 263, 497, 583
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 6 cut(s) 168, 181, 280, 338, 470, 508
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 6 cut(s) 205, 325, 329, 396, 415, 586
MseI TTAA 4 cut(s) 171, 185, 477, 507
MslI CAYNNNNRTG 1 cut(s) 560
MspA1I CMGCKG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 569
Mva1269I GAATGC 1 cut(s) 122
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 2 cut(s) 377, 561
NdeII GATC 2 cut(s) 269, 548
NlaIII CATG 4 cut(s) 28, 226, 295, 419
NlaIV GGNNCC 2 cut(s) 124, 216
NmuCI GTSAC 1 cut(s) 58
NspI RCATGY 1 cut(s) 226
PctI GAATGC 1 cut(s) 122
PfeI GAWTC 2 cut(s) 259, 401
PkrI GCNGC 1 cut(s) 379
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PshAI GACNNNNGTC 1 cut(s) 38
PshBI ATTAAT 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 567
PspGI CCWGG 1 cut(s) 567
PspN4I GGNNCC 2 cut(s) 124, 216
PspOMI GGGCCC 1 cut(s) 214
PspPI GGNCC 2 cut(s) 214, 215
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 5 cut(s) 84, 106, 192, 530, 566
RsaNI GTAC 5 cut(s) 83, 105, 191, 529, 565
RseI CAYNNNNRTG 1 cut(s) 560
SacII CCGCGG 1 cut(s) 378
SaqAI TTAA 4 cut(s) 171, 185, 477, 507
SatI GCNGC 1 cut(s) 378
Sau3AI GATC 2 cut(s) 269, 548
Sau96I GGNCC 2 cut(s) 214, 215
ScaI AGTACT 1 cut(s) 530
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 569
SduI GDGCHC 1 cut(s) 218
SetI ASST 8 cut(s) 65, 73, 88, 245, 411, 494, 570, 585
SexAI ACCWGGT 1 cut(s) 567
SfaNI GCATC 2 cut(s) 352, 505
SfcI CTRYAG 3 cut(s) 108, 410, 444
Sfr303I CCGCGG 1 cut(s) 378
SgrBI CCGCGG 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 560
Sse9I AATT 6 cut(s) 168, 181, 280, 338, 470, 508
SsiI CCGC 5 cut(s) 120, 226, 375, 377, 559
SspI AATATT 1 cut(s) 393
SspMI CTAG 1 cut(s) 329
StyD4I CCNGG 1 cut(s) 567
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 1 cut(s) 494
TaqI TCGA 4 cut(s) 55, 114, 321, 388
TasI AATT 6 cut(s) 168, 181, 280, 338, 470, 508
TatI WGTACW 3 cut(s) 104, 190, 528
TauI GCSGC 1 cut(s) 380
TfiI GAWTC 2 cut(s) 259, 401
Tru1I TTAA 4 cut(s) 171, 185, 477, 507
Tru9I TTAA 4 cut(s) 171, 185, 477, 507
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 13, 351
TspGWI ACGGA 2 cut(s) 302, 465
VspI ATTAAT 1 cut(s) 171
XapI RAATTY 2 cut(s) 181, 470
XceI RCATGY 1 cut(s) 226
XspI CTAG 1 cut(s) 329
ZrmI AGTACT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.