Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002798.1

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

8666 .. 11698

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002798.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atgagcaagttcagaggttcttcacggcaagaagatgacattgatgatgtcctaaagcccaagtcagcggcaaatcttcggctattcctgactcggggtaagaaaatggccccgccaaccgaaaaggttaaaccaatatgtacaaagaaactaaagacaacattagtatcggtcgaagatcatgaagctatcgcaaaaaccgatcagtctccgggcaatgtcaaccgcacttatgaggacggggttgaagaaggattcaacatgtttaagatattttccgcaaagacaaatccatgtggaggaagggccaaatgtacaatggccgaagcaagagatgctgttagaaaacacttggaaagccacctaacaaggaggtcagtgttgttgtttctaaatgggatatcggacccctcgttcggatgctctcttgttagagatggaacggaatattacttgggtaatggttggagtagatgtttgcactatattagtgagggaaaagaggagctaaatttggtgttcaatttccaagctgataccatgagattttatattacaagatttgacgaagaaggcaatatgattcgatcgattccatacctcggaaggggcacccatcctgtgcatgtatttggaatggaacagctgagcgtagagcaaatatattctgtgggtagtggtgtcaatgatcacgtggttatcataaggggtccttttcgtgaccgattacaagctgctggcattccagatttatttacaatgaagcttgaaactaaccctgaacttttttgggaaattaaagtgacatattatggcaaacacggggtcaagttccattatggatggtcaacgtttgtgtatgacacatcgctaacaactgcacactatgttaagttcaagttgcttcaaggcaaaacaatttcagctgtaatctttgatagcaccacaggggtagtagtcacgccttggttaatccctgtcaaccaagccaattcttccaatgctagtcattcgaatgcaggtccgtcaaacgtagttggtgatgggatagaggaactagttgaaggagcaaatgaagatgtgccgatggacgacgaagtgtggctggtagttagtcaaggctatagtgcagatgagcttgacggatacccatactgcaaatgcaatttgcaggctcatcatggtgtaagttcccttcttcacctcaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

45.02

Weight (kDa)

6.17

Isoelectric Point (pI)

34.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1010
AccB1I	GGYRCC	1 cut(s)	611
AciI	CCGC	4 cut(s)	68, 113, 226, 279
AclI	AACGTT	1 cut(s)	851
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	511
AcvI	CACGTG	1 cut(s)	694
AfaI	GTAC	2 cut(s)	142, 316
AfiI	CCNNNNNNNGG	5 cut(s)	94, 299, 416, 602, 607
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	7 cut(s)	248, 259, 523, 770, 898, 908, 1064
AhlI	ACTAGT	1 cut(s)	1057
AloI	GAACNNNNNNTCC	2 cut(s)	398, 430
AluBI	AGCT	8 cut(s)	188, 508, 533, 646, 734, 766, 926, 1138
AluI	AGCT	8 cut(s)	188, 508, 533, 646, 734, 766, 926, 1138
Alw26I	GTCTC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	93
AoxI	GGCC	3 cut(s)	108, 306, 321
ApeKI	GCWGC	1 cut(s)	734
ApoI	RAATTY	1 cut(s)	511
ArsI	GACNNNNNNTTYG	4 cut(s)	398, 430, 810, 842
AspS9I	GGNCC	5 cut(s)	109, 306, 406, 710, 1022
AsuC2I	CCSGG	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	1052, 1193
AsuII	TTCGAA	1 cut(s)	1013
AvaI	CYCGRG	1 cut(s)	93
AvaII	GGWCC	3 cut(s)	406, 710, 1022
BaeGI	GKGCMC	1 cut(s)	614
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BanI	GGYRCC	1 cut(s)	611
BarI	GAAGNNNNNNTAC	2 cut(s)	1179, 1211
BbrPI	CACGTG	1 cut(s)	694
BbvI	GCAGC	1 cut(s)	721
BccI	CCATC	5 cut(s)	431, 624, 837, 1037, 1081
BceAI	ACGGC	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	1139
BclI	TGATCA	1 cut(s)	688
BcnI	CCSGG	1 cut(s)	213
BcoDI	GTCTC	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	1057
BfaI	CTAG	2 cut(s)	1005, 1058
BfmI	CTRYAG	1 cut(s)	1123
BfuAI	ACCTGC	1 cut(s)	1010
BfuI	GTATCC	1 cut(s)	1139
BisI	GCNGC	2 cut(s)	69, 735
BlpI	GCTNAGC	1 cut(s)	647
BlsI	GCNGC	2 cut(s)	70, 736
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	3 cut(s)	406, 710, 1022
BmeT110I	CYCGRG	1 cut(s)	93
BmgT120I	GGNCC	5 cut(s)	109, 306, 406, 710, 1022
BmiI	GGNNCC	4 cut(s)	111, 408, 613, 711
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	2 cut(s)	325, 410
Bpu1102I	GCTNAGC	1 cut(s)	647
Bpu14I	TTCGAA	1 cut(s)	1013
BpuMI	CCSGG	1 cut(s)	213
Bsa29I	ATCGAT	1 cut(s)	590
BsaAI	YACGTR	1 cut(s)	694
BsaJI	CCNNGG	2 cut(s)	601, 965
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 299, 416, 602, 607
Bse3DI	GCAATG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	590
BseDI	CCNNGG	2 cut(s)	601, 965
BseGI	GGATG	3 cut(s)	425, 616, 848
BseLI	CCNNNNNNNGG	5 cut(s)	94, 299, 416, 602, 607
BseMI	GCAATG	1 cut(s)	223
BseMII	CTCAG	1 cut(s)	638
BseRI	GAGGAG	1 cut(s)	518
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	1 cut(s)	721
BsgI	GTGCAG	2 cut(s)	864, 1149
Bsh1285I	CGRYCG	2 cut(s)	174, 590
BshFI	GGCC	3 cut(s)	110, 308, 323
BshNI	GGYRCC	1 cut(s)	611
BshVI	ATCGAT	1 cut(s)	590
BsiEI	CGRYCG	2 cut(s)	174, 590
BsiHKCI	CYCGRG	1 cut(s)	93
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	5 cut(s)	94, 299, 416, 602, 607
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	2 cut(s)	741, 1021
BsnI	GGCC	3 cut(s)	110, 308, 323
BsoBI	CYCGRG	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	1013
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp1407I	TGTACA	2 cut(s)	140, 314
Bsp143I	GATC	4 cut(s)	178, 202, 587, 688
Bsp1720I	GCTNAGC	1 cut(s)	647
BspACI	CCGC	4 cut(s)	68, 113, 226, 279
BspANI	GGCC	3 cut(s)	110, 308, 323
BspCNI	CTCAG	1 cut(s)	639
BspDI	ATCGAT	1 cut(s)	590
BspHI	TCATGA	1 cut(s)	181
BspLI	GGNNCC	4 cut(s)	111, 408, 613, 711
BspMI	ACCTGC	1 cut(s)	1010
BspT104I	TTCGAA	1 cut(s)	1013
BspT107I	GGYRCC	1 cut(s)	611
BsrDI	GCAATG	1 cut(s)	223
BsrGI	TGTACA	2 cut(s)	140, 314
BssECI	CCNNGG	2 cut(s)	601, 965
BssMI	GATC	4 cut(s)	178, 202, 587, 688
BssT1I	CCWWGG	1 cut(s)	965
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstAUI	TGTACA	2 cut(s)	140, 314
BstBAI	YACGTR	1 cut(s)	694
BstBI	TTCGAA	1 cut(s)	1013
BstC8I	GCNNGC	2 cut(s)	739, 1173
BstDEI	CTNAG	1 cut(s)	647
BstF5I	GGATG	3 cut(s)	425, 616, 848
BstKTI	GATC	4 cut(s)	181, 205, 590, 691
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	4 cut(s)	178, 202, 587, 688
BstMCI	CGRYCG	2 cut(s)	174, 590
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNSI	RCATGY	2 cut(s)	265, 629
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	1123
BstSLI	GKGCMC	1 cut(s)	614
BstV1I	GCAGC	1 cut(s)	721
Bsu15I	ATCGAT	1 cut(s)	590
BsuI	GTATCC	1 cut(s)	1139
BsuRI	GGCC	3 cut(s)	110, 308, 323
BsuTUI	ATCGAT	1 cut(s)	590
BtgZI	GCGATG	1 cut(s)	852
BtsCI	GGATG	3 cut(s)	425, 616, 848
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	1010
Cac8I	GCNNGC	2 cut(s)	739, 1173
CciI	TCATGA	1 cut(s)	181
Cfr13I	GGNCC	5 cut(s)	109, 306, 406, 710, 1022
ClaI	ATCGAT	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	141, 315
CviAII	CATG	6 cut(s)	182, 262, 294, 541, 626, 1181
CviQI	GTAC	2 cut(s)	141, 315
DdeI	CTNAG	1 cut(s)	647
DpnI	GATC	4 cut(s)	180, 204, 589, 690
DpnII	GATC	4 cut(s)	178, 202, 587, 688
EaeI	YGGCCR	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	965
Eco32I	GATATC	1 cut(s)	402
Eco47I	GGWCC	3 cut(s)	406, 710, 1022
Eco72I	CACGTG	1 cut(s)	694
Eco88I	CYCGRG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	710
EcoRV	GATATC	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	965
ErhI	CCWWGG	1 cut(s)	965
FaeI	CATG	6 cut(s)	185, 265, 297, 544, 629, 1184
FalI	AAGNNNNNCTT	2 cut(s)	697, 729
FatI	CATG	6 cut(s)	181, 261, 293, 540, 625, 1180
FauI	CCCGC	1 cut(s)	120
FbaI	TGATCA	1 cut(s)	688
Fnu4HI	GCNGC	2 cut(s)	69, 735
FokI	GGATG	3 cut(s)	432, 603, 855
Fsp4HI	GCNGC	2 cut(s)	69, 735
FspBI	CTAG	2 cut(s)	1005, 1058
GluI	GCNGC	2 cut(s)	69, 735
HaeIII	GGCC	3 cut(s)	110, 308, 323
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	6 cut(s)	185, 265, 297, 544, 629, 1184
HincII	GTYRAC	3 cut(s)	223, 849, 982
HindII	GTYRAC	3 cut(s)	223, 849, 982
HindIII	AAGCTT	1 cut(s)	764
HinfI	GANTC	4 cut(s)	91, 255, 583, 592
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	2 cut(s)	1052, 1193
Hpy166II	GTNNAC	3 cut(s)	223, 849, 982
Hpy188I	TCNGA	4 cut(s)	14, 406, 419, 605
Hpy188III	TCNNGA	4 cut(s)	88, 182, 719, 746
Hpy8I	GTNNAC	3 cut(s)	223, 849, 982
Hpy99I	CGWCG	1 cut(s)	1097
HpyAV	CCTTC	6 cut(s)	245, 297, 566, 600, 1058, 1205
HpyCH4IV	ACGT	3 cut(s)	693, 851, 1032
HpyCH4V	TGCA	8 cut(s)	481, 625, 881, 1019, 1130, 1158, 1164, 1171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	1 cut(s)	647
HpySE526I	ACGT	3 cut(s)	693, 851, 1032
Hsp92II	CATG	6 cut(s)	185, 265, 297, 544, 629, 1184
Ksp22I	TGATCA	1 cut(s)	688
Kzo9I	GATC	4 cut(s)	178, 202, 587, 688
LmnI	GCTCC	2 cut(s)	505, 1067
Lsp1109I	GCAGC	1 cut(s)	721
LweI	GCATC	2 cut(s)	325, 410
MaeI	CTAG	2 cut(s)	1005, 1058
MaeII	ACGT	3 cut(s)	693, 851, 1032
MaeIII	GTNAC	3 cut(s)	719, 802, 958
MalI	GATC	4 cut(s)	180, 204, 589, 690
MboI	GATC	4 cut(s)	178, 202, 587, 688
MboII	GAAGA	9 cut(s)	12, 44, 68, 188, 260, 581, 987, 1088, 1190
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	6 cut(s)	511, 523, 795, 918, 991, 1165
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	446
MnlI	CCTC	9 cut(s)	8, 229, 293, 366, 421, 487, 496, 611, 1045
MseI	TTAA	5 cut(s)	129, 267, 798, 891, 971
MslI	CAYNNNNRTG	2 cut(s)	1014, 1182
MspA1I	CMGCKG	3 cut(s)	68, 646, 926
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	213
Mva1269I	GAATGC	2 cut(s)	741, 1021
MwoI	GCNNNNNNNGC	1 cut(s)	335
NciI	CCSGG	1 cut(s)	213
NdeII	GATC	4 cut(s)	178, 202, 587, 688
NlaIII	CATG	6 cut(s)	185, 265, 297, 544, 629, 1184
NlaIV	GGNNCC	4 cut(s)	111, 408, 613, 711
NmuCI	GTSAC	3 cut(s)	719, 802, 958
NspI	RCATGY	2 cut(s)	265, 629
NspV	TTCGAA	1 cut(s)	1013
PagI	TCATGA	1 cut(s)	181
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 410
PctI	GAATGC	2 cut(s)	741, 1021
PfeI	GAWTC	3 cut(s)	255, 583, 592
PkrI	GCNGC	2 cut(s)	70, 736
Ple19I	CGATCG	1 cut(s)	590
PleI	GAGTC	1 cut(s)	85
PmaCI	CACGTG	1 cut(s)	694
PmlI	CACGTG	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	694
PpuMI	RGGWCCY	1 cut(s)	710
PscI	ACATGT	1 cut(s)	261
Psp1406I	AACGTT	1 cut(s)	851
Psp5II	RGGWCCY	1 cut(s)	710
PspCI	CACGTG	1 cut(s)	694
PspN4I	GGNNCC	4 cut(s)	111, 408, 613, 711
PspPI	GGNCC	5 cut(s)	109, 306, 406, 710, 1022
PspPPI	RGGWCCY	1 cut(s)	710
PvuI	CGATCG	1 cut(s)	590
PvuII	CAGCTG	2 cut(s)	646, 926
RsaI	GTAC	2 cut(s)	142, 316
RsaNI	GTAC	2 cut(s)	141, 315
RseI	CAYNNNNRTG	2 cut(s)	1014, 1182
SaqAI	TTAA	5 cut(s)	129, 267, 798, 891, 971
SatI	GCNGC	2 cut(s)	69, 735
Sau3AI	GATC	4 cut(s)	178, 202, 587, 688
Sau96I	GGNCC	5 cut(s)	109, 306, 406, 710, 1022
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	1 cut(s)	213
SduI	GDGCHC	1 cut(s)	614
SfaNI	GCATC	2 cut(s)	325, 410
SfcI	CTRYAG	1 cut(s)	1123
SfuI	TTCGAA	1 cut(s)	1013
SinI	GGWCC	3 cut(s)	406, 710, 1022
SmiMI	CAYNNNNRTG	2 cut(s)	1014, 1182
SpeI	ACTAGT	1 cut(s)	1057
Sse9I	AATT	6 cut(s)	511, 523, 795, 918, 991, 1165
SsiI	CCGC	4 cut(s)	68, 113, 226, 279
SspI	AATATT	1 cut(s)	449
SspMI	CTAG	2 cut(s)	1005, 1058
StyD4I	CCNGG	1 cut(s)	211
StyI	CCWWGG	1 cut(s)	965
TaiI	ACGT	3 cut(s)	696, 854, 1035
TaqI	TCGA	4 cut(s)	174, 586, 590, 1013
TaqII	GACCGA	2 cut(s)	160, 738
TasI	AATT	6 cut(s)	511, 523, 795, 918, 991, 1165
TatI	WGTACW	2 cut(s)	140, 314
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	3 cut(s)	255, 583, 592
Tru1I	TTAA	5 cut(s)	129, 267, 798, 891, 971
Tru9I	TTAA	5 cut(s)	129, 267, 798, 891, 971
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	3 cut(s)	719, 802, 958
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	3 cut(s)	719, 802, 958
TspDTI	ATGAA	3 cut(s)	198, 776, 1089
TspGWI	ACGGA	3 cut(s)	458, 1014, 1158
TspRI	CASTG	1 cut(s)	384
VpaK11BI	GGWCC	3 cut(s)	406, 710, 1022
XapI	RAATTY	1 cut(s)	511
XceI	RCATGY	2 cut(s)	265, 629
XcmI	CCANNNNNNNNNTGG	1 cut(s)	316
XspI	CTAG	2 cut(s)	1005, 1058

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.