Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

35173326 .. 35175657

Gene Structure 2332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG195800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCCGAAGCAAGGGATGCTGTCAGTAAGAACGGCAACGCTATTCCAAAAGTGTTTGCAGAAAAACACTTGGAAAGCCACCTAACAAGGAGGTTGGTGTTGTTGTTTCTAAATGGAATACCGGACCCCTCGTTTGGATGCTCCCTTGTTAGACATGAGACGGAATATTACTTGGGTAATAGTTGGAGTAGATGTTTGCACTATATTAATGAGGGAAAAGATGAGCTCAATTTGGTTTTCAATTTCGACGCTGATACCATGAGATTTTATATTACAAGATTTGACGAAGAAGACAATATGATTCGATCTGTTCCATACCTCGGAATGGGCACCCATCCTGTGCATGTATTTGGAATGGAACAGATGAGCGTAGAGCAAATATATTCTGTGGATAGTGGTGTCAATGATCACGTGGTTATCATAAGGGGTCTTTTTCGTGACCGATTACAAGCTGTTGGAATTCCAGATTACTTTACAATGAAGCTTGAAACTAACCCTGAAATGTTTTGGGAAATTAAAGTGGCATATGTTGGCAAACACGGGGGTCAAGTTCTATTATGGATGGTCGACATTTGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

22.22

Weight (kDa)

5.43

Isoelectric Point (pI)

28.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	329
AccI	GTMKAC	1 cut(s)	567
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	459
AcvI	CACGTG	1 cut(s)	412
AfiI	CCNNNNNNNGG	4 cut(s)	12, 134, 320, 325
AgsI	TTSAA	2 cut(s)	241, 488
AluBI	AGCT	3 cut(s)	226, 452, 484
AluI	AGCT	3 cut(s)	226, 452, 484
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	152
AoxI	GGCC	1 cut(s)	3
ApoI	RAATTY	1 cut(s)	459
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AseI	ATTAAT	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	124
AvaII	GGWCC	1 cut(s)	124
BaeGI	GKGCMC	1 cut(s)	332
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	228
BbrPI	CACGTG	1 cut(s)	412
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	228
BccI	CCATC	2 cut(s)	342, 556
BceAI	ACGGC	1 cut(s)	49
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	2 cut(s)	126, 331
BmsI	GCATC	2 cut(s)	7, 128
BpiI	GAAGAC	1 cut(s)	297
BsaAI	YACGTR	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	319
BsaWI	WCCGGW	1 cut(s)	121
BsaXI	ACNNNNNCTCC	2 cut(s)	178, 208
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 134, 320, 325
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	4 cut(s)	22, 143, 334, 567
BseLI	CCNNNNNNNGG	4 cut(s)	12, 134, 320, 325
BseSI	GKGCMC	1 cut(s)	332
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	329
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	1 cut(s)	122
BslI	CCNNNNNNNGG	4 cut(s)	12, 134, 320, 325
BsmAI	GTCTC	1 cut(s)	152
BsmBI	CGTCTC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	2 cut(s)	228, 332
Bsp143I	GATC	2 cut(s)	305, 406
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	2 cut(s)	126, 331
BspT107I	GGYRCC	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	2 cut(s)	305, 406
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstBAI	YACGTR	1 cut(s)	412
BstF5I	GGATG	4 cut(s)	22, 143, 334, 567
BstKTI	GATC	2 cut(s)	308, 409
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	2 cut(s)	305, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	347
BstSLI	GKGCMC	1 cut(s)	332
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	4 cut(s)	22, 143, 334, 567
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	257
CviAII	CATG	3 cut(s)	155, 259, 344
CviJI	RGCY	5 cut(s)	5, 78, 226, 452, 484
CviKI_1	RGCY	5 cut(s)	5, 78, 226, 452, 484
DpnI	GATC	2 cut(s)	307, 408
DpnII	GATC	2 cut(s)	305, 406
EaeI	YGGCCR	1 cut(s)	3
Ecl136II	GAGCTC	1 cut(s)	226
Eco24I	GRGCYC	1 cut(s)	228
Eco47I	GGWCC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	226
Eco72I	CACGTG	1 cut(s)	412
EcoICRI	GAGCTC	1 cut(s)	226
EcoRI	GAATTC	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	228
Esp3I	CGTCTC	1 cut(s)	152
FaeI	CATG	3 cut(s)	158, 262, 347
FatI	CATG	3 cut(s)	154, 258, 343
FauNDI	CATATG	1 cut(s)	526
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	567
FokI	GGATG	4 cut(s)	29, 150, 321, 574
FriOI	GRGCYC	1 cut(s)	228
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	1 cut(s)	257
Hin1II	CATG	3 cut(s)	158, 262, 347
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	122
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	1 cut(s)	323
Hpy188III	TCNNGA	2 cut(s)	437, 464
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	3 cut(s)	59, 199, 343
HpyF10VI	GCNNNNNNNGC	1 cut(s)	17
HpySE526I	ACGT	1 cut(s)	411
Hsp92II	CATG	3 cut(s)	158, 262, 347
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	305, 406
LmnI	GCTCC	1 cut(s)	146
LpnPI	CCDG	4 cut(s)	135, 351, 477, 510
LweI	GCATC	2 cut(s)	7, 128
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	2 cut(s)	307, 408
MboI	GATC	2 cut(s)	305, 406
MboII	GAAGA	2 cut(s)	299, 302
MhlI	GDGCHC	2 cut(s)	228, 332
MluCI	AATT	4 cut(s)	229, 241, 459, 513
MmeI	TCCRAC	2 cut(s)	164, 436
MnlI	CCTC	4 cut(s)	84, 139, 205, 329
MseI	TTAA	2 cut(s)	207, 516
MspI	CCGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	17
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	2 cut(s)	305, 406
NlaIII	CATG	3 cut(s)	158, 262, 347
NlaIV	GGNNCC	2 cut(s)	126, 331
NmuCI	GTSAC	1 cut(s)	437
NspI	RCATGY	1 cut(s)	347
PfeI	GAWTC	1 cut(s)	301
PmaCI	CACGTG	1 cut(s)	412
PmlI	CACGTG	1 cut(s)	412
Ppu21I	YACGTR	1 cut(s)	412
PshBI	ATTAAT	1 cut(s)	207
Psp124BI	GAGCTC	1 cut(s)	228
PspCI	CACGTG	1 cut(s)	412
PspN4I	GGNNCC	2 cut(s)	126, 331
PspPI	GGNCC	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	566
SaqAI	TTAA	2 cut(s)	207, 516
Sau3AI	GATC	2 cut(s)	305, 406
Sau96I	GGNCC	1 cut(s)	124
SduI	GDGCHC	2 cut(s)	228, 332
SetI	ASST	7 cut(s)	84, 95, 228, 321, 414, 454, 486
SfaNI	GCATC	2 cut(s)	7, 128
SinI	GGWCC	1 cut(s)	124
Sse9I	AATT	4 cut(s)	229, 241, 459, 513
SspI	AATATT	1 cut(s)	167
SstI	GAGCTC	1 cut(s)	228
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	3 cut(s)	246, 304, 567
TaqII	GACCGA	1 cut(s)	456
TasI	AATT	4 cut(s)	229, 241, 459, 513
TfiI	GAWTC	1 cut(s)	301
Tru1I	TTAA	2 cut(s)	207, 516
Tru9I	TTAA	2 cut(s)	207, 516
TseFI	GTSAC	1 cut(s)	437
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	494
TspGWI	ACGGA	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	124
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	1 cut(s)	459
XceI	RCATGY	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.