Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Forward (+)

52274247 .. 52275999

Gene Structure 1753 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG353700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCAGAACAACCACAGGAACTCCTTATTTATATTTGATGTGCCCATGTTCTTCGCCGAGGTCACCTTGGAGAAGCACAGGACCTTTTTAAAAATTCCTCCGGCTTTCCGGGTGAGACATTTGTCCGCGAACGGTACGCCGTTGGAAGCATGGATGACTCTATCTGGCCTCCCTGCCAAGATATGGTCCTGTAGTCTTATTCCAATGGGGGACGAATATATGATTGTGCGTGGTTGGAAACAATTCCTGCAAAATATTAGTGGCGGGAAATCTGAACTCTGCCTTATTTTCCAACTCCATTCTAGTACAATGACGTTTGTCGTTACTCGGTTTGATGGATTAGGTCATCTAATGCGAACCCCACCCGATCTCGCCGATTTCACCATTCCACCTTCCGTAGCCGGCTTGGCACAGCTAAAGGAAGAGTATGTGTACGAAGTTGGAAAACACAAGTGGTACCGTGTCGAAGAACAGTTGGTCATCTTTGACGGTCCATTTCTGACCCGTCTGTGGCAATCCGGAATTCCTTCATCTTACACCATTCAGCTTGAGACACACCGTCACATGTTGTGGAAGGTTCAGCTGGAAGCTTTTGGACTATCGTCATTGCAGTTTACCAGCCCTTCCAATTCTCCGGGGACCCCCTCCACCATAGCCACTAACTATCCAGTTGTAGGAGCCGTCGGTGTTCCGGAGCATGCGGAACCTTATGTAGTTGGATGCGTTTGGCAAATGCAAGTTCATGACCATATCATGCAGCACCTGCAATGGTATCCGGCATGCACCATTATGTGTAGTCACAATATGTCCAAGTCTGCGTTGATAAATTTCCCCTATTTTTGCTTGTCGTCCTCTGCAATCCTTGCCTCAGAGTTTTGTGCAGGCAGAAAACATTGCACTCTGCAAAGATGTTTTCCTTTTCCAAAGTTTGACCGGAGCGGCCATGCTAATAAAGTTGGTTCCTCATTGCAATACCCTCTTTATGACCGAAGGGTATTCAGCATTCAAGCAGCATTTTATGCTGCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

343

Amino Acids

38.92

Weight (kDa)

8.52

Isoelectric Point (pI)

51.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	771
Acc36I	ACCTGC	1 cut(s)	771
Acc65I	GGTACC	1 cut(s)	456
AccB1I	GGYRCC	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	183
AccBSI	CCGCTC	1 cut(s)	939
AccII	CGCG	1 cut(s)	128
AccIII	TCCGGA	2 cut(s)	518, 691
AciI	CCGC	4 cut(s)	126, 264, 701, 939
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	3 cut(s)	93, 522, 826
AfaI	GTAC	4 cut(s)	136, 307, 434, 458
AfiI	CCNNNNNNNGG	3 cut(s)	183, 510, 674
AflIII	ACRYGT	1 cut(s)	564
AgsI	TTSAA	1 cut(s)	1007
AhdI	GACNNNNNGTC	1 cut(s)	558
AluBI	AGCT	4 cut(s)	415, 547, 583, 590
AluI	AGCT	4 cut(s)	415, 547, 583, 590
Alw26I	GTCTC	2 cut(s)	109, 545
AlwNI	CAGNNNCTG	1 cut(s)	763
Aor13HI	TCCGGA	2 cut(s)	518, 691
AoxI	GGCC	2 cut(s)	166, 940
ApeKI	GCWGC	3 cut(s)	757, 1010, 1022
ApoI	RAATTY	3 cut(s)	93, 522, 826
Asp700I	GAANNNNTTC	2 cut(s)	242, 526
Asp718I	GGTACC	1 cut(s)	456
AspS9I	GGNCC	4 cut(s)	81, 186, 491, 639
AsuC2I	CCSGG	2 cut(s)	110, 636
AsuHPI	GGTGA	3 cut(s)	55, 124, 373
AvaII	GGWCC	4 cut(s)	81, 186, 491, 639
BaeGI	GKGCMC	1 cut(s)	45
BanI	GGYRCC	1 cut(s)	456
BbvI	GCAGC	3 cut(s)	769, 1009, 1022
BccI	CCATC	1 cut(s)	329
BceAI	ACGGC	2 cut(s)	124, 665
BciVI	GTATCC	1 cut(s)	783
BcnI	CCSGG	2 cut(s)	110, 636
BcoDI	GTCTC	2 cut(s)	109, 545
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	190
BfuAI	ACCTGC	1 cut(s)	771
BfuI	GTATCC	1 cut(s)	783
BglI	GCCNNNNNGGC	1 cut(s)	407
BisI	GCNGC	4 cut(s)	758, 940, 1011, 1023
BlsI	GCNGC	4 cut(s)	759, 941, 1012, 1024
Bme1390I	CCNGG	2 cut(s)	110, 636
Bme18I	GGWCC	4 cut(s)	81, 186, 491, 639
BmeRI	GACNNNNNGTC	1 cut(s)	558
BmgT120I	GGNCC	4 cut(s)	81, 186, 491, 639
BmiI	GGNNCC	6 cut(s)	458, 640, 641, 679, 705, 961
BmrFI	CCNGG	2 cut(s)	110, 636
BmsI	GCATC	1 cut(s)	710
BoxI	GACNNNNGTC	3 cut(s)	121, 317, 601
BpuEI	CTTGAG	1 cut(s)	569
BpuMI	CCSGG	2 cut(s)	110, 636
BsaJI	CCNNGG	3 cut(s)	57, 66, 635
BsaWI	WCCGGW	3 cut(s)	518, 691, 933
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	3 cut(s)	183, 510, 674
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	1 cut(s)	668
Bse3DI	GCAATG	4 cut(s)	605, 773, 892, 965
BseAI	TCCGGA	2 cut(s)	518, 691
BseDI	CCNNGG	3 cut(s)	57, 66, 635
BseGI	GGATG	2 cut(s)	159, 725
BseLI	CCNNNNNNNGG	3 cut(s)	183, 510, 674
BseMI	GCAATG	4 cut(s)	605, 773, 892, 965
BseMII	CTCAG	1 cut(s)	882
BseNI	ACTGG	1 cut(s)	668
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	769, 1009, 1022
BsgI	GTGCAG	1 cut(s)	900
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	168, 942
BshNI	GGYRCC	1 cut(s)	456
BsiSI	CCGG	8 cut(s)	101, 109, 402, 519, 635, 692, 776, 934
BslFI	GGGAC	2 cut(s)	224, 652
BslI	CCNNNNNNNGG	3 cut(s)	183, 510, 674
BsmAI	GTCTC	2 cut(s)	109, 545
BsmFI	GGGAC	2 cut(s)	224, 652
BsmI	GAATGC	1 cut(s)	1002
BsnI	GGCC	2 cut(s)	168, 942
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	2 cut(s)	518, 691
Bsp143I	GATC	1 cut(s)	367
BspACI	CCGC	4 cut(s)	126, 264, 701, 939
BspANI	GGCC	2 cut(s)	168, 942
BspCNI	CTCAG	1 cut(s)	881
BspEI	TCCGGA	2 cut(s)	518, 691
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	742
BspLI	GGNNCC	6 cut(s)	458, 640, 641, 679, 705, 961
BspMI	ACCTGC	1 cut(s)	771
BspT107I	GGYRCC	1 cut(s)	456
BsrBI	CCGCTC	1 cut(s)	939
BsrDI	GCAATG	4 cut(s)	605, 773, 892, 965
BsrFI	RCCGGY	1 cut(s)	401
BsrI	ACTGG	1 cut(s)	668
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	3 cut(s)	57, 66, 635
BssMI	GATC	1 cut(s)	367
BssT1I	CCWWGG	1 cut(s)	66
Bst4CI	ACNGT	5 cut(s)	134, 461, 474, 491, 560
Bst6I	CTCTTC	1 cut(s)	417
BstAPI	GCANNNNNTGC	3 cut(s)	763, 863, 1019
BstC8I	GCNNGC	4 cut(s)	403, 699, 781, 883
BstDEI	CTNAG	1 cut(s)	868
BstEII	GGTNACC	1 cut(s)	61
BstF5I	GGATG	2 cut(s)	159, 725
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	1 cut(s)	370
BstMAI	GTCTC	2 cut(s)	109, 545
BstMBI	GATC	1 cut(s)	367
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 763, 863, 1019
BstNSI	RCATGY	3 cut(s)	568, 701, 783
BstPAI	GACNNNNGTC	3 cut(s)	121, 317, 601
BstPI	GGTNACC	1 cut(s)	61
BstSCI	CCNGG	2 cut(s)	108, 634
BstSFI	CTRYAG	1 cut(s)	190
BstSLI	GKGCMC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	769, 1009, 1022
BsuI	GTATCC	1 cut(s)	783
BsuRI	GGCC	2 cut(s)	168, 942
BtsCI	GGATG	2 cut(s)	159, 725
BveI	ACCTGC	1 cut(s)	771
Cac8I	GCNNGC	4 cut(s)	403, 699, 781, 883
CaiI	CAGNNNCTG	1 cut(s)	763
CciI	TCATGA	1 cut(s)	742
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	4 cut(s)	81, 186, 491, 639
Csp6I	GTAC	4 cut(s)	135, 306, 433, 457
CviAII	CATG	8 cut(s)	46, 150, 565, 698, 743, 754, 780, 944
CviQI	GTAC	4 cut(s)	135, 306, 433, 457
DdeI	CTNAG	1 cut(s)	868
DpnI	GATC	1 cut(s)	369
DpnII	GATC	1 cut(s)	367
DraI	TTTAAA	1 cut(s)	90
DriI	GACNNNNNGTC	1 cut(s)	558
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	417
Eam1105I	GACNNNNNGTC	1 cut(s)	558
EarI	CTCTTC	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	4 cut(s)	81, 186, 491, 639
Eco91I	GGTNACC	1 cut(s)	61
EcoO109I	RGGNCCY	2 cut(s)	81, 639
EcoO65I	GGTNACC	1 cut(s)	61
EcoRI	GAATTC	1 cut(s)	522
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	8 cut(s)	49, 153, 568, 701, 746, 757, 783, 947
FaqI	GGGAC	2 cut(s)	224, 652
FatI	CATG	8 cut(s)	45, 149, 564, 697, 742, 753, 779, 943
FauI	CCCGC	1 cut(s)	257
Fnu4HI	GCNGC	4 cut(s)	758, 940, 1011, 1023
FokI	GGATG	2 cut(s)	166, 732
Fsp4HI	GCNGC	4 cut(s)	758, 940, 1011, 1023
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	4 cut(s)	758, 940, 1011, 1023
HaeIII	GGCC	2 cut(s)	168, 942
HapII	CCGG	8 cut(s)	101, 109, 402, 519, 635, 692, 776, 934
Hin1II	CATG	8 cut(s)	49, 153, 568, 701, 746, 757, 783, 947
HindIII	AAGCTT	1 cut(s)	588
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	8 cut(s)	101, 109, 402, 519, 635, 692, 776, 934
HphI	GGTGA	3 cut(s)	55, 124, 373
Hpy166II	GTNNAC	2 cut(s)	433, 615
Hpy188I	TCNGA	3 cut(s)	274, 501, 871
Hpy188III	TCNNGA	3 cut(s)	519, 692, 743
Hpy8I	GTNNAC	2 cut(s)	433, 615
Hpy99I	CGWCG	1 cut(s)	686
HpyAV	CCTTC	5 cut(s)	402, 537, 568, 633, 984
HpyCH4III	ACNGT	5 cut(s)	134, 461, 474, 491, 560
HpyCH4IV	ACGT	1 cut(s)	314
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 763, 863, 1019
HpyF3I	CTNAG	1 cut(s)	868
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	8 cut(s)	49, 153, 568, 701, 746, 757, 783, 947
KflI	GGGWCCC	1 cut(s)	639
Kpn2I	TCCGGA	2 cut(s)	518, 691
KpnI	GGTACC	1 cut(s)	460
KroI	GCCGGC	1 cut(s)	401
KroNI	GCCGGC	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	367
LmnI	GCTCC	3 cut(s)	677, 694, 936
Lsp1109I	GCAGC	3 cut(s)	769, 1009, 1022
LweI	GCATC	1 cut(s)	710
MaeI	CTAG	1 cut(s)	303
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	4 cut(s)	61, 322, 560, 797
MalI	GATC	1 cut(s)	369
MbiI	CCGCTC	1 cut(s)	939
MboI	GATC	1 cut(s)	367
MboII	GAAGA	3 cut(s)	43, 434, 479
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	5 cut(s)	93, 242, 522, 628, 826
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	5 cut(s)	123, 215, 316, 421, 697
MnlI	CCTC	8 cut(s)	52, 108, 179, 655, 862, 877, 973, 987
MroI	TCCGGA	2 cut(s)	518, 691
MroNI	GCCGGC	1 cut(s)	401
MroXI	GAANNNNTTC	2 cut(s)	242, 526
MseI	TTAA	1 cut(s)	89
MslI	CAYNNNNRTG	1 cut(s)	788
MspA1I	CMGCKG	1 cut(s)	583
MspI	CCGG	8 cut(s)	101, 109, 402, 519, 635, 692, 776, 934
MspR9I	CCNGG	2 cut(s)	110, 636
Mva1269I	GAATGC	1 cut(s)	1002
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	407, 763, 863, 1019
NaeI	GCCGGC	1 cut(s)	403
NciI	CCSGG	2 cut(s)	110, 636
NdeII	GATC	1 cut(s)	367
NgoMIV	GCCGGC	1 cut(s)	401
NlaIII	CATG	8 cut(s)	49, 153, 568, 701, 746, 757, 783, 947
NlaIV	GGNNCC	6 cut(s)	458, 640, 641, 679, 705, 961
NmeAIII	GCCGAG	1 cut(s)	82
NmuCI	GTSAC	3 cut(s)	61, 560, 797
NspI	RCATGY	3 cut(s)	568, 701, 783
PaeI	GCATGC	2 cut(s)	701, 783
PagI	TCATGA	1 cut(s)	742
PaqCI	CACCTGC	1 cut(s)	771
PciI	ACATGT	1 cut(s)	564
PctI	GAATGC	1 cut(s)	1002
PdiI	GCCGGC	1 cut(s)	403
PdmI	GAANNNNTTC	2 cut(s)	242, 526
PflMI	CCANNNNNTGG	1 cut(s)	183
PkrI	GCNGC	4 cut(s)	759, 941, 1012, 1024
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
PpuMI	RGGWCCY	2 cut(s)	81, 639
PscI	ACATGT	1 cut(s)	564
PshAI	GACNNNNGTC	3 cut(s)	121, 317, 601
Psp5II	RGGWCCY	2 cut(s)	81, 639
PspEI	GGTNACC	1 cut(s)	61
PspN4I	GGNNCC	6 cut(s)	458, 640, 641, 679, 705, 961
PspPI	GGNCC	4 cut(s)	81, 186, 491, 639
PspPPI	RGGWCCY	2 cut(s)	81, 639
PstNI	CAGNNNCTG	1 cut(s)	763
PvuII	CAGCTG	1 cut(s)	583
RsaI	GTAC	4 cut(s)	136, 307, 434, 458
RsaNI	GTAC	4 cut(s)	135, 306, 433, 457
RseI	CAYNNNNRTG	1 cut(s)	788
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	4 cut(s)	758, 940, 1011, 1023
Sau3AI	GATC	1 cut(s)	367
Sau96I	GGNCC	4 cut(s)	81, 186, 491, 639
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	2 cut(s)	110, 636
SduI	GDGCHC	1 cut(s)	45
SfaNI	GCATC	1 cut(s)	710
SfcI	CTRYAG	1 cut(s)	190
SinI	GGWCC	4 cut(s)	81, 186, 491, 639
SmiMI	CAYNNNNRTG	1 cut(s)	788
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	2 cut(s)	701, 783
Sse9I	AATT	5 cut(s)	93, 242, 522, 628, 826
SsiI	CCGC	4 cut(s)	126, 264, 701, 939
SspI	AATATT	1 cut(s)	256
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	2 cut(s)	108, 634
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	5 cut(s)	134, 461, 474, 491, 560
TaiI	ACGT	1 cut(s)	317
TaqI	TCGA	1 cut(s)	465
TaqII	GACCGA	1 cut(s)	1002
TasI	AATT	5 cut(s)	93, 242, 522, 628, 826
TatI	WGTACW	1 cut(s)	305
TauI	GCSGC	1 cut(s)	942
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	3 cut(s)	61, 560, 797
TseI	GCWGC	3 cut(s)	757, 1010, 1022
Tsp45I	GTSAC	3 cut(s)	61, 560, 797
TspDTI	ATGAA	2 cut(s)	519, 731
TspGWI	ACGGA	1 cut(s)	385
Van91I	CCANNNNNTGG	1 cut(s)	183
VpaK11BI	GGWCC	4 cut(s)	81, 186, 491, 639
XapI	RAATTY	3 cut(s)	93, 522, 826
XceI	RCATGY	3 cut(s)	568, 701, 783
XmnI	GAANNNNTTC	2 cut(s)	242, 526
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.