Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

34389128 .. 34389412

Gene Structure 285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG191600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGAGCAAGTTCGGAGGTTCTTCACAGCAAGAAGATGACATTGATGATGTGTGGACGCCAAAGTCAGCGGCAAATCTTCGGGTATTCCTGACTCGGGGTAAGAAAACTGCCTCGCCAACCGAAAAGGTTAAACCAAGATGTGCCAAAAAACTAAAGACAAAATTAGTATCGGTCGAAGATCATGAAGCTATCGAAAAAACCGATCAGTCTCTAGGCAATGTTAGCCACATTTATGAAGACAGGGTTGAAGAAGGATTCAACATGTTCATGATATTTTTCGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

94

Amino Acids

10.64

Weight (kDa)

6.73

Isoelectric Point (pI)

45.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	61
AccII	CGCG	1 cut(s)	281
AciI	CCGC	1 cut(s)	68
AcyI	GRCGYC	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	94
AflIII	ACRYGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	248, 259
AluBI	AGCT	1 cut(s)	188
AluI	AGCT	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	93
AvaI	CYCGRG	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	243
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	212
BisI	GCNGC	1 cut(s)	69
BlsI	GCNGC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	56
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse3DI	GCAATG	1 cut(s)	223
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMI	GCAATG	1 cut(s)	223
Bsh1236I	CGCG	1 cut(s)	281
Bsh1285I	CGRYCG	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	93
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmAI	GTCTC	1 cut(s)	213
BsoBI	CYCGRG	1 cut(s)	93
Bsp143I	GATC	2 cut(s)	178, 202
BspACI	CCGC	1 cut(s)	68
BspFNI	CGCG	1 cut(s)	281
BspHI	TCATGA	2 cut(s)	181, 267
BsrDI	GCAATG	1 cut(s)	223
BssMI	GATC	2 cut(s)	178, 202
BssNI	GRCGYC	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	181, 205
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	178, 202
BstMCI	CGRYCG	1 cut(s)	174
BstMWI	GCNNNNNNNGC	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	265
BstUI	CGCG	1 cut(s)	281
BstV2I	GAAGAC	1 cut(s)	243
CciI	TCATGA	2 cut(s)	181, 267
CseI	GACGC	1 cut(s)	64
CviAII	CATG	3 cut(s)	182, 262, 268
CviJI	RGCY	2 cut(s)	188, 225
CviKI_1	RGCY	2 cut(s)	188, 225
DpnI	GATC	2 cut(s)	180, 204
DpnII	GATC	2 cut(s)	178, 202
DrdI	GACNNNNNNGTC	1 cut(s)	61
DseDI	GACNNNNNNGTC	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	93
FaeI	CATG	3 cut(s)	185, 265, 271
FaiI	YATR	4 cut(s)	183, 234, 263, 269
FatI	CATG	3 cut(s)	181, 261, 267
Fnu4HI	GCNGC	1 cut(s)	69
Fsp4HI	GCNGC	1 cut(s)	69
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	69
HgaI	GACGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	185, 265, 271
HinfI	GANTC	2 cut(s)	91, 255
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	3 cut(s)	88, 182, 268
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	185, 265, 271
Kzo9I	GATC	2 cut(s)	178, 202
LpnPI	CCDG	2 cut(s)	101, 226
MaeI	CTAG	1 cut(s)	212
MalI	GATC	2 cut(s)	180, 204
MboI	GATC	2 cut(s)	178, 202
MboII	GAAGA	6 cut(s)	12, 44, 68, 188, 248, 260
MluCI	AATT	1 cut(s)	161
MlyI	GAGTC	1 cut(s)	85
MnlI	CCTC	2 cut(s)	8, 121
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	2 cut(s)	231, 266
MspA1I	CMGCKG	1 cut(s)	68
MvnI	CGCG	1 cut(s)	281
MwoI	GCNNNNNNNGC	1 cut(s)	222
NdeII	GATC	2 cut(s)	178, 202
NlaIII	CATG	3 cut(s)	185, 265, 271
NspI	RCATGY	1 cut(s)	265
PagI	TCATGA	2 cut(s)	181, 267
PciI	ACATGT	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	1 cut(s)	70
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PscI	ACATGT	1 cut(s)	261
RseI	CAYNNNNRTG	2 cut(s)	231, 266
SaqAI	TTAA	1 cut(s)	129
SatI	GCNGC	1 cut(s)	69
Sau3AI	GATC	2 cut(s)	178, 202
SchI	GAGTC	1 cut(s)	85
SetI	ASST	3 cut(s)	19, 129, 190
SmiMI	CAYNNNNRTG	2 cut(s)	231, 266
Sse9I	AATT	1 cut(s)	161
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	212
TaqI	TCGA	2 cut(s)	174, 192
TaqII	GACCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	161
TauI	GCSGC	1 cut(s)	71
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TspDTI	ATGAA	3 cut(s)	198, 249, 256
XceI	RCATGY	1 cut(s)	265
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.