Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003970

Physical Location & Seq

Genomic Coordinates Reverse (-)

43148528 .. 43150216

Gene Structure 1689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG335700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCATGTCATTGGATATCATTATGCAGGGCAGATGGCATTGAACAACAACAACCCTGTGAGGAGTTACAAGTTGCCTATGTTCTATGCCAACATCGACAACAATGATCACACTGCACGCCCAAGAATTTCAAGAGAGTTCTGGAAGGCAAACTTGTTACATGACAAGTCGAAGTTAGCTTTGCTGAGTCTAAATGGGTTCCCTCAGTGGGCTTGGGAGTGTCAAGTTGTTCATTTTGAGAACGACATATATTTCGGTACACACTTTTATAAGTTTTATGGTGTTGTTAGTGAAGGAAACAGAAACATCCATCTTGTTTTCAACTACGAAGGTAGTCTCATGCGGTTCACGGTGACAAGATTTGATTGTAATGGACATACGCTGCGATCCCCGCCAAACCTATATTCATACCAGGGACCTCCGCTCATTTACGACGGTTTGAAACATCTAAAAAAGGAGTTGTTATGCGTTAACACACTTGCAATAGAGAACCACATGAAGATGCCCCAGCAGTTTGTCCGAAAAGAAAAACTGAATGCAAACTGGTATGTTCTACAATCCATGGAGGGAACTGCGATGAATGTATTTTTCAAGAAAGTCGGCAAGACACTACATCTGACAACACGGTACACGAAGTTCTTGAGAGTATTTGACATTGATCCCGATCAGAAAATATGCATGTATCTTGTTGGGCAGGATCCTTTCATTTTCCACCCCACTTATCAACTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

28.79

Weight (kDa)

9.3

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003970)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr6g0270511
rosa_laevigata	RLG00000002092 RLG00000013784
rosa_multiflora	Rmu_sc0000317.1_g000005 Rmu_sc0000361.1_g000005 Rmu_sc0000894.1_g000064 Rmu_sc0002045.1_g000027 Rmu_sc0002798.1_g000001 Rmu_sc0003179.1_g000026 Rmu_sc0005712.1_g000017 Rmu_sc0006198.1_g000016
rosa_roxburghii	Rroxscaffold_1G00068960 Rroxscaffold_2G00129070 Rroxscaffold_4G00309340 Rroxscaffold_7G00162700
rosa_samantha	Rh2AG311400 Rh2AG353700 Rh2BG394400 Rh2DG335700 Rh3BG122200 Rh3BG264900 Rh4BG133000 Rh6AG174200 Rh6AG195800 Rh6CG151600 Rh6CG200500 Rh6CG200600 Rh6CG200700 Rh6DG191600 Rh7AG367700 Rh7CG386000
rosa_wichuraiana	Rw2G031700 Rw6G016580 Rw6G017120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
AccBSI	CCGCTC	1 cut(s)	424
AciI	CCGC	3 cut(s)	343, 392, 422
AclWI	GGATC	4 cut(s)	381, 653, 692, 705
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	2 cut(s)	259, 629
AfiI	CCNNNNNNNGG	1 cut(s)	208
AflII	CTTAAG	1 cut(s)	728
AgsI	TTSAA	5 cut(s)	43, 132, 322, 442, 592
AjnI	CCWGG	1 cut(s)	411
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AluBI	AGCT	1 cut(s)	179
AluI	AGCT	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	4 cut(s)	381, 653, 692, 705
ApeKI	GCWGC	1 cut(s)	382
ApoI	RAATTY	1 cut(s)	126
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AspS9I	GGNCC	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	364
AvaII	GGWCC	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	697
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	2 cut(s)	28, 318
BciT130I	CCWGG	1 cut(s)	413
BclI	TGATCA	1 cut(s)	106
BcoDI	GTCTC	1 cut(s)	341
BfrI	CTTAAG	1 cut(s)	728
BisI	GCNGC	1 cut(s)	383
BlsI	GCNGC	1 cut(s)	384
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	1 cut(s)	416
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	3 cut(s)	200, 417, 699
BmrFI	CCNGG	1 cut(s)	413
BmsI	GCATC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	661
BsaBI	GATNNNNATC	1 cut(s)	663
BsaJI	CCNNGG	2 cut(s)	412, 561
Bsc4I	CCNNNNNNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	548
Bse8I	GATNNNNATC	1 cut(s)	663
BseBI	CCWGG	1 cut(s)	413
BseDI	CCNNGG	2 cut(s)	412, 561
BseGI	GGATG	1 cut(s)	306
BseJI	GATNNNNATC	1 cut(s)	663
BseLI	CCNNNNNNNGG	1 cut(s)	208
BseMII	CTCAG	2 cut(s)	176, 218
BseNI	ACTGG	1 cut(s)	548
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	369
BseYI	CCCAGC	1 cut(s)	507
BsgI	GTGCAG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	429
BslI	CCNNNNNNNGG	1 cut(s)	208
BsmAI	GTCTC	1 cut(s)	341
BsmFI	GGGAC	1 cut(s)	429
BsmI	GAATGC	1 cut(s)	541
Bsp143I	GATC	5 cut(s)	106, 386, 658, 664, 697
Bsp19I	CCATGG	1 cut(s)	561
BspACI	CCGC	3 cut(s)	343, 392, 422
BspCNI	CTCAG	2 cut(s)	177, 217
BspLI	GGNNCC	3 cut(s)	200, 417, 699
BspPI	GGATC	4 cut(s)	381, 653, 692, 705
BspTI	CTTAAG	1 cut(s)	728
BsrBI	CCGCTC	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	548
BssECI	CCNNGG	2 cut(s)	412, 561
BssMI	GATC	5 cut(s)	106, 386, 658, 664, 697
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	352, 437, 627
BstAFI	CTTAAG	1 cut(s)	728
BstC8I	GCNNGC	1 cut(s)	118
BstDEI	CTNAG	2 cut(s)	185, 204
BstDSI	CCRYGG	1 cut(s)	561
BstF5I	GGATG	1 cut(s)	306
BstKTI	GATC	5 cut(s)	109, 389, 661, 667, 700
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	5 cut(s)	106, 386, 658, 664, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	413
BstNSI	RCATGY	2 cut(s)	8, 682
BstSCI	CCNGG	1 cut(s)	411
BstV1I	GCAGC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	697
BstYI	RGATCY	1 cut(s)	697
BtgI	CCRYGG	1 cut(s)	561
BtgZI	GCGATG	1 cut(s)	590
BtsCI	GGATG	1 cut(s)	306
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 212
Cac8I	GCNNGC	1 cut(s)	118
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	258, 628
CviAII	CATG	6 cut(s)	5, 161, 340, 496, 562, 679
CviJI	RGCY	2 cut(s)	179, 212
CviKI_1	RGCY	2 cut(s)	179, 212
CviQI	GTAC	2 cut(s)	258, 628
DdeI	CTNAG	2 cut(s)	185, 204
DpnI	GATC	5 cut(s)	108, 388, 660, 666, 699
DpnII	GATC	5 cut(s)	106, 386, 658, 664, 697
Eco130I	CCWWGG	1 cut(s)	561
Eco32I	GATATC	1 cut(s)	17
Eco47I	GGWCC	1 cut(s)	416
EcoO109I	RGGNCCY	1 cut(s)	416
EcoRII	CCWGG	1 cut(s)	411
EcoRV	GATATC	1 cut(s)	17
EcoT14I	CCWWGG	1 cut(s)	561
EcoT22I	ATGCAT	2 cut(s)	6, 680
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	6 cut(s)	8, 164, 343, 499, 565, 682
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	1 cut(s)	429
FatI	CATG	6 cut(s)	4, 160, 339, 495, 561, 678
FauI	CCCGC	1 cut(s)	399
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	1 cut(s)	383
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	383
GluI	GCNGC	1 cut(s)	383
GsaI	CCCAGC	1 cut(s)	511
Hin1II	CATG	6 cut(s)	8, 164, 343, 499, 565, 682
HincII	GTYRAC	1 cut(s)	472
HindII	GTYRAC	1 cut(s)	472
HinfI	GANTC	1 cut(s)	187
HpaI	GTTAAC	1 cut(s)	472
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	4 cut(s)	260, 348, 472, 630
Hpy188I	TCNGA	3 cut(s)	521, 618, 669
Hpy188III	TCNNGA	5 cut(s)	132, 142, 592, 640, 662
Hpy8I	GTNNAC	4 cut(s)	260, 348, 472, 630
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	3 cut(s)	139, 287, 323
HpyCH4III	ACNGT	3 cut(s)	352, 437, 627
HpyCH4V	TGCA	6 cut(s)	4, 26, 116, 482, 539, 678
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	2 cut(s)	185, 204
Hsp92II	CATG	6 cut(s)	8, 164, 343, 499, 565, 682
Ksp22I	TGATCA	1 cut(s)	106
KspAI	GTTAAC	1 cut(s)	472
Kzo9I	GATC	5 cut(s)	106, 386, 658, 664, 697
LpnPI	CCDG	8 cut(s)	12, 69, 127, 398, 425, 521, 529, 680
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	65, 156, 352
MalI	GATC	5 cut(s)	108, 388, 660, 666, 699
MbiI	CCGCTC	1 cut(s)	424
MboI	GATC	5 cut(s)	106, 386, 658, 664, 697
MboII	GAAGA	1 cut(s)	511
MflI	RGATCY	1 cut(s)	697
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	54, 213, 429, 559
Mph1103I	ATGCAT	2 cut(s)	6, 680
MseI	TTAA	2 cut(s)	471, 729
MslI	CAYNNNNRTG	1 cut(s)	500
MspCI	CTTAAG	1 cut(s)	728
MspR9I	CCNGG	1 cut(s)	413
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	413
MwoI	GCNNNNNNNGC	1 cut(s)	391
NcoI	CCATGG	1 cut(s)	561
NdeII	GATC	5 cut(s)	106, 386, 658, 664, 697
NlaIII	CATG	6 cut(s)	8, 164, 343, 499, 565, 682
NlaIV	GGNNCC	3 cut(s)	200, 417, 699
NmuCI	GTSAC	1 cut(s)	352
NsiI	ATGCAT	2 cut(s)	6, 680
NspI	RCATGY	2 cut(s)	8, 682
PctI	GAATGC	1 cut(s)	541
PkrI	GCNGC	1 cut(s)	384
PleI	GAGTC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	195
PpuMI	RGGWCCY	1 cut(s)	416
PsiI	TTATAA	1 cut(s)	270
Psp5II	RGGWCCY	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	411
PspFI	CCCAGC	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	411
PspN4I	GGNNCC	3 cut(s)	200, 417, 699
PspPI	GGNCC	1 cut(s)	416
PspPPI	RGGWCCY	1 cut(s)	416
PsrI	GAACNNNNNNTAC	2 cut(s)	620, 652
PsuI	RGATCY	1 cut(s)	697
RsaI	GTAC	2 cut(s)	259, 629
RsaNI	GTAC	2 cut(s)	258, 628
RseI	CAYNNNNRTG	1 cut(s)	500
SaqAI	TTAA	2 cut(s)	471, 729
SatI	GCNGC	1 cut(s)	383
Sau3AI	GATC	5 cut(s)	106, 386, 658, 664, 697
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	1 cut(s)	413
SetI	ASST	4 cut(s)	181, 334, 402, 421
SfaNI	GCATC	1 cut(s)	492
SinI	GGWCC	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	640, 728
SmoI	CTYRAG	2 cut(s)	640, 728
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	3 cut(s)	343, 392, 422
StyD4I	CCNGG	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	561
TaaI	ACNGT	3 cut(s)	352, 437, 627
TaqI	TCGA	2 cut(s)	96, 170
TasI	AATT	1 cut(s)	126
Tru1I	TTAA	2 cut(s)	471, 729
Tru9I	TTAA	2 cut(s)	471, 729
TscAI	CASTG	2 cut(s)	118, 212
TseFI	GTSAC	1 cut(s)	352
TseI	GCWGC	1 cut(s)	382
Tsp45I	GTSAC	1 cut(s)	352
TspDTI	ATGAA	5 cut(s)	221, 396, 512, 593, 694
TspRI	CASTG	2 cut(s)	118, 212
Vha464I	CTTAAG	1 cut(s)	728
VpaK11BI	GGWCC	1 cut(s)	416
XapI	RAATTY	1 cut(s)	126
XceI	RCATGY	2 cut(s)	8, 682
Zsp2I	ATGCAT	2 cut(s)	6, 680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.